RNA–Protein interactions for RNA: ENST00000598452.1

SNRPA-204, Transcript of small nuclear ribonucleoprotein polypeptide A, humanhuman

TSL 2

Gene SNRPA, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA-204ENST00000598452 NISCHQ9Y2I1 1504 aa47.2■■■■■ 5.15
SNRPA-204ENST00000598452 ABCC9O60706 1549 aa42.3■■■■■ 4.36
SNRPA-204ENST00000598452 CCDC180Q9P1Z9 1646 aa42.21■■■■■ 4.35
SNRPA-204ENST00000598452 RB1CC1Q8TDY2 1594 aa40.19■■■■■ 4.02
SNRPA-204ENST00000598452 DCAF8L2P0C7V8 631 aa39.94■■■■□ 3.98
SNRPA-204ENST00000598452 NACADO15069 1562 aa39.93■■■■□ 3.98
SNRPA-204ENST00000598452 DNAJC5BQ9UF47 199 aa39.68■■■■□ 3.94
SNRPA-204ENST00000598452 PABPN1Q86U42 306 aaKnown RBP eCLIP39.46■■■■□ 3.913e-10■■■□□ 15.3
SNRPA-204ENST00000598452 MYO15BQ96JP2 1530 aa39.39■■■■□ 3.9
SNRPA-204ENST00000598452 UNC13AQ9UPW8 1703 aa39.25■■■■□ 3.87
SNRPA-204ENST00000598452 ZCCHC6Q5VYS8 1495 aaKnown RBP39.12■■■■□ 3.85
SNRPA-204ENST00000598452 BICRAQ9NZM4 1560 aa39.07■■■■□ 3.84
SNRPA-204ENST00000598452 DCAF1Q9Y4B6 1507 aa38.93■■■■□ 3.82
SNRPA-204ENST00000598452 SCRIBQ14160 1630 aa38.59■■■■□ 3.77
SNRPA-204ENST00000598452 SHROOM4Q9ULL8 1493 aa38.44■■■■□ 3.74
SNRPA-204ENST00000598452 CC2D2AQ9P2K1 1620 aa38.15■■■■□ 3.7
SNRPA-204ENST00000598452 EIF4G1Q04637 1599 aaKnown RBP38.09■■■■□ 3.69
SNRPA-204ENST00000598452 CECR2Q9BXF3 1484 aa38.07■■■■□ 3.68
SNRPA-204ENST00000598452 NCAPD3P42695 1498 aa36.92■■■■□ 3.5
SNRPA-204ENST00000598452 ATAD2BQ9ULI0 1458 aa36.84■■■■□ 3.49
SNRPA-204ENST00000598452 SMARCA4P51532 1647 aa36.77■■■■□ 3.48
SNRPA-204ENST00000598452 SMARCA2P51531 1590 aa36.68■■■■□ 3.46
SNRPA-204ENST00000598452 HMGXB3Q12766 1538 aa36.6■■■■□ 3.45
SNRPA-204ENST00000598452 BAZ1AQ9NRL2 1556 aaPredicted RBP36.6■■■■□ 3.45
SNRPA-204ENST00000598452 ERCC6Q03468 1493 aa36.48■■■■□ 3.43
SNRPA-204ENST00000598452 BAZ1BQ9UIG0 1483 aaKnown RBP36.47■■■■□ 3.43
SNRPA-204ENST00000598452 MROH2BQ7Z745 1585 aa36.4■■■■□ 3.42
SNRPA-204ENST00000598452 PEG3Q9GZU2 1588 aa36.39■■■■□ 3.42
SNRPA-204ENST00000598452 NESP48681 1621 aa36.37■■■■□ 3.41
SNRPA-204ENST00000598452 CUX2O14529 1486 aa36.33■■■■□ 3.41
SNRPA-204ENST00000598452 DNAJC5Q9H3Z4 198 aa36.3■■■■□ 3.4
SNRPA-204ENST00000598452 LAMC3Q9Y6N6 1575 aa36.02■■■■□ 3.36
SNRPA-204ENST00000598452 WIZO95785 1651 aa35.94■■■■□ 3.34
SNRPA-204ENST00000598452 THOC2Q8NI27 1593 aaKnown RBP35.89■■■■□ 3.34
SNRPA-204ENST00000598452 PDS5BQ9NTI5 1447 aa35.85■■■■□ 3.33
SNRPA-204ENST00000598452 CADPSQ9ULU8 1353 aa35.82■■■■□ 3.32
SNRPA-204ENST00000598452 KIF21AQ7Z4S6 1674 aa35.81■■■■□ 3.32
SNRPA-204ENST00000598452 RSF1Q96T23 1441 aaPredicted RBP35.69■■■■□ 3.3
SNRPA-204ENST00000598452 MRC2Q9UBG0 1479 aa35.54■■■■□ 3.28
SNRPA-204ENST00000598452 TOP2AP11388 1531 aaKnown RBP35.47■■■■□ 3.27
SNRPA-204ENST00000598452 WDR62O43379 1518 aa35.43■■■■□ 3.26
SNRPA-204ENST00000598452 CFTRP13569 1480 aa35.41■■■■□ 3.26
SNRPA-204ENST00000598452 CEP164Q9UPV0 1460 aa35.41■■■■□ 3.26
SNRPA-204ENST00000598452 FANCD2Q9BXW9 1451 aa35.41■■■■□ 3.26
SNRPA-204ENST00000598452 CCDC88BA6NC98 1476 aa35.13■■■■□ 3.21
SNRPA-204ENST00000598452 URB2Q14146 1524 aaKnown RBP35.12■■■■□ 3.21
SNRPA-204ENST00000598452 PRDM2Q13029 1718 aa34.92■■■■□ 3.18
SNRPA-204ENST00000598452 TRIM41Q8WV44 630 aa34.81■■■■□ 3.16
SNRPA-204ENST00000598452 OSCARQ8IYS5 282 aa34.76■■■■□ 3.16
SNRPA-204ENST00000598452 TOPBP1Q92547 1522 aa34.75■■■■□ 3.15
SNRPA-204ENST00000598452 IFT140Q96RY7 1462 aa34.71■■■■□ 3.15
SNRPA-204ENST00000598452 ZNF608Q9ULD9 1512 aaPredicted RBP34.71■■■■□ 3.15
SNRPA-204ENST00000598452 ABCC8Q09428 1581 aa34.62■■■■□ 3.13
SNRPA-204ENST00000598452 DNMBPQ6XZF7 1577 aa34.59■■■■□ 3.13
SNRPA-204ENST00000598452 EIF4G3O43432 1585 aaKnown RBP34.45■■■■□ 3.1
SNRPA-204ENST00000598452 AQRO60306 1485 aaKnown RBP eCLIP34.41■■■■□ 3.15e-7■■■■■ 41.9
SNRPA-204ENST00000598452 POLA1P09884 1462 aaPredicted RBP34.4■■■■□ 3.1
SNRPA-204ENST00000598452 TARBP1Q13395 1621 aaKnown RBP34.4■■■■□ 3.1
SNRPA-204ENST00000598452 RAD54L2Q9Y4B4 1467 aa34.33■■■■□ 3.09
SNRPA-204ENST00000598452 SOGA1O94964 1423 aa34.27■■■■□ 3.08
SNRPA-204ENST00000598452 SUPT5HO00267 1087 aaKnown RBP34.26■■■■□ 3.08
SNRPA-204ENST00000598452 RIMBP3CA6NJZ7 1639 aa34.25■■■■□ 3.07
SNRPA-204ENST00000598452 RIMBP3BA6NNM3 1639 aa34.25■■■■□ 3.07
SNRPA-204ENST00000598452 RIMBP3Q9UFD9 1639 aa34.25■■■■□ 3.07
SNRPA-204ENST00000598452 TDRD9Q8NDG6 1382 aaKnown RBP34.23■■■■□ 3.07
SNRPA-204ENST00000598452 FGD5Q6ZNL6 1462 aa34.2■■■■□ 3.07
SNRPA-204ENST00000598452 FBLN2P98095 1184 aa34.2■■■■□ 3.07
SNRPA-204ENST00000598452 CUX1P39880 1505 aa34.19■■■■□ 3.06
SNRPA-204ENST00000598452 ARHGEF11O15085 1522 aa34.17■■■■□ 3.06
SNRPA-204ENST00000598452 CHD1O14646 1710 aa34.15■■■■□ 3.06
SNRPA-204ENST00000598452 SNAPC4Q5SXM2 1469 aa34.03■■■■□ 3.04
SNRPA-204ENST00000598452 CYB5RLQ6IPT4 315 aa33.99■■■■□ 3.03
SNRPA-204ENST00000598452 WDR97A6NE52 1622 aa33.97■■■■□ 3.03
SNRPA-204ENST00000598452 CHMP7Q8WUX9 453 aaPredicted RBP33.93■■■■□ 3.02
SNRPA-204ENST00000598452 GRIN2BQ13224 1484 aa33.93■■■■□ 3.02
SNRPA-204ENST00000598452 MAGI1Q96QZ7 1491 aaPredicted RBP33.89■■■■□ 3.02
SNRPA-204ENST00000598452 ARAP1Q96P48 1450 aa33.86■■■■□ 3.01
SNRPA-204ENST00000598452 GAPVD1Q14C86 1478 aa33.83■■■■□ 3.01
SNRPA-204ENST00000598452 SYNJ2O15056 1496 aa33.8■■■■□ 3
SNRPA-204ENST00000598452 ABCA10Q8WWZ4 1543 aa33.79■■■■□ 3
SNRPA-204ENST00000598452 CLASP1Q7Z460 1538 aa33.79■■■■□ 3
SNRPA-204ENST00000598452 SYNJ1O43426 1573 aa33.75■■■□□ 2.99
SNRPA-204ENST00000598452 PBRM1Q86U86 1689 aa33.73■■■□□ 2.99
SNRPA-204ENST00000598452 ABCA5Q8WWZ7 1642 aa33.71■■■□□ 2.99
SNRPA-204ENST00000598452 WRNQ14191 1432 aaPredicted RBP eCLIP33.69■■■□□ 2.98
SNRPA-204ENST00000598452 TOP2BQ02880 1626 aa33.61■■■□□ 2.97
SNRPA-204ENST00000598452 BIVM-ERCC5R4GMW8 1640 aa33.59■■■□□ 2.97
SNRPA-204ENST00000598452 TRHP20396 242 aaPredicted RBP33.58■■■□□ 2.97
SNRPA-204ENST00000598452 GRIN2AQ12879 1464 aa33.5■■■□□ 2.95
SNRPA-204ENST00000598452 ADAMTS12P58397 1594 aa33.46■■■□□ 2.95
SNRPA-204ENST00000598452 FHAD1B1AJZ9 1412 aa33.4■■■□□ 2.94
SNRPA-204ENST00000598452 NUP160Q12769 1436 aa33.38■■■□□ 2.93
SNRPA-204ENST00000598452 CEP170Q5SW79 1584 aa33.37■■■□□ 2.93
SNRPA-204ENST00000598452 ERICH3Q5RHP9 1530 aa33.34■■■□□ 2.93
SNRPA-204ENST00000598452 ERCC6L2Q5T890 1561 aa33.34■■■□□ 2.93
SNRPA-204ENST00000598452 SHROOM2Q13796 1616 aa33.17■■■□□ 2.9
SNRPA-204ENST00000598452 JPH4Q96JJ6 628 aa33.09■■■□□ 2.89
SNRPA-204ENST00000598452 PRG4Q92954 1404 aaPredicted RBP33.09■■■□□ 2.89
SNRPA-204ENST00000598452 IGF1RP08069 1367 aa33.02■■■□□ 2.88
SNRPA-204ENST00000598452 KIF27Q86VH2 1401 aa33■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms