RNA–Protein interactions for RNA: ENST00000598422.1

XRCC1-208, Transcript of X-ray repair cross complementing 1, humanhuman

TSL 2

Gene XRCC1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1-208ENST00000598422 NISCHQ9Y2I1 1504 aa35.82■■■■□ 3.32
XRCC1-208ENST00000598422 CCDC180Q9P1Z9 1646 aa31.91■■■□□ 2.7
XRCC1-208ENST00000598422 ABCC9O60706 1549 aa31.6■■■□□ 2.65
XRCC1-208ENST00000598422 RB1CC1Q8TDY2 1594 aa30.24■■■□□ 2.43
XRCC1-208ENST00000598422 DCAF8L2P0C7V8 631 aa30.15■■■□□ 2.42
XRCC1-208ENST00000598422 NACADO15069 1562 aa30.13■■■□□ 2.41
XRCC1-208ENST00000598422 MYO15BQ96JP2 1530 aa29.84■■■□□ 2.37
XRCC1-208ENST00000598422 ZCCHC6Q5VYS8 1495 aaKnown RBP29.79■■■□□ 2.36
XRCC1-208ENST00000598422 DCAF1Q9Y4B6 1507 aa29.61■■■□□ 2.33
XRCC1-208ENST00000598422 PABPN1Q86U42 306 aaKnown RBP eCLIP29.5■■■□□ 2.31
XRCC1-208ENST00000598422 UNC13AQ9UPW8 1703 aa29.35■■■□□ 2.29
XRCC1-208ENST00000598422 BICRAQ9NZM4 1560 aa29.26■■■□□ 2.27
XRCC1-208ENST00000598422 DNAJC5BQ9UF47 199 aa29.18■■■□□ 2.26
XRCC1-208ENST00000598422 SCRIBQ14160 1630 aa29.16■■■□□ 2.26
XRCC1-208ENST00000598422 SHROOM4Q9ULL8 1493 aa29.03■■■□□ 2.24
XRCC1-208ENST00000598422 EIF4G1Q04637 1599 aaKnown RBP28.57■■■□□ 2.16
XRCC1-208ENST00000598422 CC2D2AQ9P2K1 1620 aa28.51■■■□□ 2.15
XRCC1-208ENST00000598422 CECR2Q9BXF3 1484 aa28.43■■■□□ 2.14
XRCC1-208ENST00000598422 SMARCA4P51532 1647 aa27.83■■■□□ 2.05
XRCC1-208ENST00000598422 NCAPD3P42695 1498 aa27.81■■■□□ 2.04
XRCC1-208ENST00000598422 BAZ1AQ9NRL2 1556 aaPredicted RBP27.8■■■□□ 2.04
XRCC1-208ENST00000598422 ATAD2BQ9ULI0 1458 aa27.79■■■□□ 2.04
XRCC1-208ENST00000598422 SMARCA2P51531 1590 aa27.76■■■□□ 2.03
XRCC1-208ENST00000598422 HMGXB3Q12766 1538 aa27.65■■■□□ 2.02
XRCC1-208ENST00000598422 MROH2BQ7Z745 1585 aa27.6■■■□□ 2.01
XRCC1-208ENST00000598422 BAZ1BQ9UIG0 1483 aaKnown RBP27.58■■■□□ 2.01
XRCC1-208ENST00000598422 PEG3Q9GZU2 1588 aa27.54■■■□□ 2
XRCC1-208ENST00000598422 ERCC6Q03468 1493 aa27.32■■□□□ 1.96
XRCC1-208ENST00000598422 WIZO95785 1651 aa27.23■■□□□ 1.95
XRCC1-208ENST00000598422 NESP48681 1621 aa27.22■■□□□ 1.95
XRCC1-208ENST00000598422 RSF1Q96T23 1441 aaPredicted RBP27.2■■□□□ 1.94
XRCC1-208ENST00000598422 LAMC3Q9Y6N6 1575 aa27.1■■□□□ 1.93
XRCC1-208ENST00000598422 CUX2O14529 1486 aa27.07■■□□□ 1.92
XRCC1-208ENST00000598422 CADPSQ9ULU8 1353 aa27.02■■□□□ 1.92
XRCC1-208ENST00000598422 PDS5BQ9NTI5 1447 aa27.01■■□□□ 1.91
XRCC1-208ENST00000598422 TOP2AP11388 1531 aaKnown RBP27■■□□□ 1.91
XRCC1-208ENST00000598422 THOC2Q8NI27 1593 aaKnown RBP26.84■■□□□ 1.89
XRCC1-208ENST00000598422 KIF21AQ7Z4S6 1674 aa26.8■■□□□ 1.88
XRCC1-208ENST00000598422 CFTRP13569 1480 aa26.77■■□□□ 1.88
XRCC1-208ENST00000598422 MRC2Q9UBG0 1479 aa26.73■■□□□ 1.87
XRCC1-208ENST00000598422 CEP164Q9UPV0 1460 aa26.72■■□□□ 1.87
XRCC1-208ENST00000598422 FANCD2Q9BXW9 1451 aa26.71■■□□□ 1.87
XRCC1-208ENST00000598422 CCDC88BA6NC98 1476 aa26.68■■□□□ 1.86
XRCC1-208ENST00000598422 WDR62O43379 1518 aa26.61■■□□□ 1.85
XRCC1-208ENST00000598422 DNAJC5Q9H3Z4 198 aa26.54■■□□□ 1.84
XRCC1-208ENST00000598422 URB2Q14146 1524 aaKnown RBP26.42■■□□□ 1.82
XRCC1-208ENST00000598422 PRDM2Q13029 1718 aa26.39■■□□□ 1.82
XRCC1-208ENST00000598422 SUPT5HO00267 1087 aaKnown RBP26.38■■□□□ 1.81
XRCC1-208ENST00000598422 TOPBP1Q92547 1522 aa26.23■■□□□ 1.79
XRCC1-208ENST00000598422 ABCC8Q09428 1581 aa26.22■■□□□ 1.79
XRCC1-208ENST00000598422 IFT140Q96RY7 1462 aa26.17■■□□□ 1.78
XRCC1-208ENST00000598422 DNMBPQ6XZF7 1577 aa26.16■■□□□ 1.78
XRCC1-208ENST00000598422 ZNF608Q9ULD9 1512 aaPredicted RBP26.04■■□□□ 1.76
XRCC1-208ENST00000598422 POLA1P09884 1462 aaPredicted RBP25.99■■□□□ 1.75
XRCC1-208ENST00000598422 OSCARQ8IYS5 282 aa25.92■■□□□ 1.74
XRCC1-208ENST00000598422 CUX1P39880 1505 aa25.91■■□□□ 1.74
XRCC1-208ENST00000598422 EIF4G3O43432 1585 aaKnown RBP25.9■■□□□ 1.74
XRCC1-208ENST00000598422 SOGA1O94964 1423 aa25.9■■□□□ 1.74
XRCC1-208ENST00000598422 FGD5Q6ZNL6 1462 aa25.9■■□□□ 1.74
XRCC1-208ENST00000598422 TARBP1Q13395 1621 aaKnown RBP25.89■■□□□ 1.74
XRCC1-208ENST00000598422 RAD54L2Q9Y4B4 1467 aa25.88■■□□□ 1.73
XRCC1-208ENST00000598422 AQRO60306 1485 aaKnown RBP eCLIP25.87■■□□□ 1.736e-6■■■■□ 25.1
XRCC1-208ENST00000598422 TDRD9Q8NDG6 1382 aaKnown RBP25.8■■□□□ 1.72
XRCC1-208ENST00000598422 WDR97A6NE52 1622 aa25.72■■□□□ 1.71
XRCC1-208ENST00000598422 FBLN2P98095 1184 aa25.7■■□□□ 1.7
XRCC1-208ENST00000598422 WRNQ14191 1432 aaPredicted RBP eCLIP25.7■■□□□ 1.7
XRCC1-208ENST00000598422 SNAPC4Q5SXM2 1469 aa25.66■■□□□ 1.7
XRCC1-208ENST00000598422 GRIN2BQ13224 1484 aa25.65■■□□□ 1.7
XRCC1-208ENST00000598422 TRIM41Q8WV44 630 aa25.64■■□□□ 1.7
XRCC1-208ENST00000598422 ABCA10Q8WWZ4 1543 aa25.63■■□□□ 1.69
XRCC1-208ENST00000598422 GAPVD1Q14C86 1478 aa25.6■■□□□ 1.69
XRCC1-208ENST00000598422 MAGI1Q96QZ7 1491 aaPredicted RBP25.6■■□□□ 1.69
XRCC1-208ENST00000598422 TOP2BQ02880 1626 aa25.59■■□□□ 1.69
XRCC1-208ENST00000598422 SYNJ1O43426 1573 aa25.57■■□□□ 1.68
XRCC1-208ENST00000598422 BIVM-ERCC5R4GMW8 1640 aa25.56■■□□□ 1.68
XRCC1-208ENST00000598422 CHMP7Q8WUX9 453 aaPredicted RBP25.56■■□□□ 1.68
XRCC1-208ENST00000598422 CHD1O14646 1710 aa25.55■■□□□ 1.68
XRCC1-208ENST00000598422 ABCA5Q8WWZ7 1642 aa25.51■■□□□ 1.67
XRCC1-208ENST00000598422 SYNJ2O15056 1496 aa25.5■■□□□ 1.67
XRCC1-208ENST00000598422 ARHGEF11O15085 1522 aa25.47■■□□□ 1.67
XRCC1-208ENST00000598422 RIMBP3CA6NJZ7 1639 aa25.45■■□□□ 1.67
XRCC1-208ENST00000598422 RIMBP3BA6NNM3 1639 aa25.45■■□□□ 1.67
XRCC1-208ENST00000598422 RIMBP3Q9UFD9 1639 aa25.45■■□□□ 1.67
XRCC1-208ENST00000598422 PBRM1Q86U86 1689 aa25.45■■□□□ 1.66
XRCC1-208ENST00000598422 CLASP1Q7Z460 1538 aa25.34■■□□□ 1.65
XRCC1-208ENST00000598422 ADAMTS12P58397 1594 aa25.31■■□□□ 1.64
XRCC1-208ENST00000598422 ERICH3Q5RHP9 1530 aa25.31■■□□□ 1.64
XRCC1-208ENST00000598422 FHAD1B1AJZ9 1412 aa25.3■■□□□ 1.64
XRCC1-208ENST00000598422 CYB5RLQ6IPT4 315 aa25.3■■□□□ 1.64
XRCC1-208ENST00000598422 GRIN2AQ12879 1464 aa25.29■■□□□ 1.64
XRCC1-208ENST00000598422 ARAP1Q96P48 1450 aa25.25■■□□□ 1.63
XRCC1-208ENST00000598422 KIF27Q86VH2 1401 aa25.2■■□□□ 1.62
XRCC1-208ENST00000598422 NUP160Q12769 1436 aa25.19■■□□□ 1.62
XRCC1-208ENST00000598422 CEP170Q5SW79 1584 aa25.14■■□□□ 1.61
XRCC1-208ENST00000598422 IGF1RP08069 1367 aa25.07■■□□□ 1.6
XRCC1-208ENST00000598422 CUL7Q14999 1698 aa25■■□□□ 1.59
XRCC1-208ENST00000598422 ERCC6L2Q5T890 1561 aa24.96■■□□□ 1.59
XRCC1-208ENST00000598422 CARMIL1Q5VZK9 1371 aa24.95■■□□□ 1.59
XRCC1-208ENST00000598422 SHROOM2Q13796 1616 aa24.95■■□□□ 1.58
XRCC1-208ENST00000598422 RUSC2Q8N2Y8 1516 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms