RNA–Protein interactions for RNA: ENST00000598159.6

SSBP4-205, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 747 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-205ENST00000598159 NISCHQ9Y2I1 1504 aa56.76■■■■■ 6.68
SSBP4-205ENST00000598159 CCDC180Q9P1Z9 1646 aa50.68■■■■■ 5.7
SSBP4-205ENST00000598159 ABCC9O60706 1549 aa50.21■■■■■ 5.63
SSBP4-205ENST00000598159 RB1CC1Q8TDY2 1594 aa48.05■■■■■ 5.28
SSBP4-205ENST00000598159 NACADO15069 1562 aa47.86■■■■■ 5.25
SSBP4-205ENST00000598159 DCAF8L2P0C7V8 631 aa47.8■■■■■ 5.24
SSBP4-205ENST00000598159 MYO15BQ96JP2 1530 aa47.38■■■■■ 5.18
SSBP4-205ENST00000598159 ZCCHC6Q5VYS8 1495 aaKnown RBP47.1■■■■■ 5.13
SSBP4-205ENST00000598159 DCAF1Q9Y4B6 1507 aa46.94■■■■■ 5.1
SSBP4-205ENST00000598159 UNC13AQ9UPW8 1703 aa46.89■■■■■ 5.1
SSBP4-205ENST00000598159 PABPN1Q86U42 306 aaKnown RBP eCLIP46.89■■■■■ 5.11e-7■■□□□ 13
SSBP4-205ENST00000598159 DNAJC5BQ9UF47 199 aa46.72■■■■■ 5.07
SSBP4-205ENST00000598159 BICRAQ9NZM4 1560 aa46.57■■■■■ 5.05
SSBP4-205ENST00000598159 SCRIBQ14160 1630 aa46.17■■■■■ 4.98
SSBP4-205ENST00000598159 SHROOM4Q9ULL8 1493 aa46.06■■■■■ 4.96
SSBP4-205ENST00000598159 EIF4G1Q04637 1599 aaKnown RBP45.41■■■■■ 4.86
SSBP4-205ENST00000598159 CC2D2AQ9P2K1 1620 aa45.39■■■■■ 4.86
SSBP4-205ENST00000598159 CECR2Q9BXF3 1484 aa45.21■■■■■ 4.83
SSBP4-205ENST00000598159 NCAPD3P42695 1498 aa44.2■■■■■ 4.67
SSBP4-205ENST00000598159 SMARCA4P51532 1647 aa44.13■■■■■ 4.65
SSBP4-205ENST00000598159 ATAD2BQ9ULI0 1458 aa44.09■■■■■ 4.65
SSBP4-205ENST00000598159 BAZ1AQ9NRL2 1556 aaPredicted RBP44.02■■■■■ 4.64
SSBP4-205ENST00000598159 SMARCA2P51531 1590 aa44.01■■■■■ 4.64
SSBP4-205ENST00000598159 HMGXB3Q12766 1538 aa43.85■■■■■ 4.61
SSBP4-205ENST00000598159 PEG3Q9GZU2 1588 aa43.73■■■■■ 4.59
SSBP4-205ENST00000598159 MROH2BQ7Z745 1585 aa43.71■■■■■ 4.59
SSBP4-205ENST00000598159 BAZ1BQ9UIG0 1483 aaKnown RBP43.68■■■■■ 4.58
SSBP4-205ENST00000598159 ERCC6Q03468 1493 aa43.35■■■■■ 4.53
SSBP4-205ENST00000598159 NESP48681 1621 aa43.26■■■■■ 4.52
SSBP4-205ENST00000598159 WIZO95785 1651 aa43.2■■■■■ 4.51
SSBP4-205ENST00000598159 CUX2O14529 1486 aa43.12■■■■■ 4.49
SSBP4-205ENST00000598159 LAMC3Q9Y6N6 1575 aa43.09■■■■■ 4.49
SSBP4-205ENST00000598159 RSF1Q96T23 1441 aaPredicted RBP43.02■■■■■ 4.48
SSBP4-205ENST00000598159 CADPSQ9ULU8 1353 aa42.89■■■■■ 4.46
SSBP4-205ENST00000598159 PDS5BQ9NTI5 1447 aa42.88■■■■■ 4.45
SSBP4-205ENST00000598159 KIF21AQ7Z4S6 1674 aa42.7■■■■■ 4.43
SSBP4-205ENST00000598159 TOP2AP11388 1531 aaKnown RBP42.69■■■■■ 4.42
SSBP4-205ENST00000598159 THOC2Q8NI27 1593 aaKnown RBP42.69■■■■■ 4.42
SSBP4-205ENST00000598159 DNAJC5Q9H3Z4 198 aa42.62■■■■■ 4.41
SSBP4-205ENST00000598159 CFTRP13569 1480 aa42.47■■■■■ 4.39
SSBP4-205ENST00000598159 MRC2Q9UBG0 1479 aa42.41■■■■■ 4.38
SSBP4-205ENST00000598159 FANCD2Q9BXW9 1451 aa42.35■■■■■ 4.37
SSBP4-205ENST00000598159 CEP164Q9UPV0 1460 aa42.34■■■■■ 4.37
SSBP4-205ENST00000598159 WDR62O43379 1518 aa42.26■■■■■ 4.36
SSBP4-205ENST00000598159 CCDC88BA6NC98 1476 aa42.25■■■■■ 4.35
SSBP4-205ENST00000598159 PRDM2Q13029 1718 aa42.03■■■■■ 4.32
SSBP4-205ENST00000598159 URB2Q14146 1524 aaKnown RBP41.94■■■■■ 4.3
SSBP4-205ENST00000598159 ABCC8Q09428 1581 aa41.63■■■■■ 4.26
SSBP4-205ENST00000598159 TOPBP1Q92547 1522 aa41.59■■■■■ 4.25
SSBP4-205ENST00000598159 SUPT5HO00267 1087 aaKnown RBP41.54■■■■■ 4.24
SSBP4-205ENST00000598159 IFT140Q96RY7 1462 aa41.51■■■■■ 4.24
SSBP4-205ENST00000598159 DNMBPQ6XZF7 1577 aa41.47■■■■■ 4.23
SSBP4-205ENST00000598159 OSCARQ8IYS5 282 aa41.35■■■■■ 4.21
SSBP4-205ENST00000598159 ZNF608Q9ULD9 1512 aaPredicted RBP41.34■■■■■ 4.21
SSBP4-205ENST00000598159 POLA1P09884 1462 aaPredicted RBP41.19■■■■■ 4.18
SSBP4-205ENST00000598159 TARBP1Q13395 1621 aaKnown RBP41.16■■■■■ 4.18
SSBP4-205ENST00000598159 EIF4G3O43432 1585 aaKnown RBP41.09■■■■■ 4.17
SSBP4-205ENST00000598159 SOGA1O94964 1423 aa41.09■■■■■ 4.17
SSBP4-205ENST00000598159 AQRO60306 1485 aaKnown RBP eCLIP41.07■■■■■ 4.168e-8■■■■■ 50.9
SSBP4-205ENST00000598159 RAD54L2Q9Y4B4 1467 aa41.03■■■■■ 4.16
SSBP4-205ENST00000598159 CUX1P39880 1505 aa41.03■■■■■ 4.16
SSBP4-205ENST00000598159 FGD5Q6ZNL6 1462 aa41■■■■■ 4.15
SSBP4-205ENST00000598159 TDRD9Q8NDG6 1382 aaKnown RBP40.91■■■■■ 4.14
SSBP4-205ENST00000598159 TRIM41Q8WV44 630 aa40.9■■■■■ 4.14
SSBP4-205ENST00000598159 WDR97A6NE52 1622 aa40.82■■■■■ 4.13
SSBP4-205ENST00000598159 FBLN2P98095 1184 aa40.76■■■■■ 4.12
SSBP4-205ENST00000598159 CHD1O14646 1710 aa40.71■■■■■ 4.11
SSBP4-205ENST00000598159 GRIN2BQ13224 1484 aa40.64■■■■■ 4.1
SSBP4-205ENST00000598159 SNAPC4Q5SXM2 1469 aa40.62■■■■■ 4.09
SSBP4-205ENST00000598159 ABCA10Q8WWZ4 1543 aa40.59■■■■■ 4.09
SSBP4-205ENST00000598159 RIMBP3CA6NJZ7 1639 aa40.59■■■■■ 4.09
SSBP4-205ENST00000598159 RIMBP3BA6NNM3 1639 aa40.59■■■■■ 4.09
SSBP4-205ENST00000598159 RIMBP3Q9UFD9 1639 aa40.59■■■■■ 4.09
SSBP4-205ENST00000598159 WRNQ14191 1432 aaPredicted RBP eCLIP40.59■■■■■ 4.09
SSBP4-205ENST00000598159 MAGI1Q96QZ7 1491 aaPredicted RBP40.58■■■■■ 4.09
SSBP4-205ENST00000598159 CHMP7Q8WUX9 453 aaPredicted RBP40.57■■■■■ 4.09
SSBP4-205ENST00000598159 GAPVD1Q14C86 1478 aa40.57■■■■■ 4.08
SSBP4-205ENST00000598159 TOP2BQ02880 1626 aa40.53■■■■■ 4.08
SSBP4-205ENST00000598159 ARHGEF11O15085 1522 aa40.52■■■■■ 4.08
SSBP4-205ENST00000598159 BIVM-ERCC5R4GMW8 1640 aa40.5■■■■■ 4.07
SSBP4-205ENST00000598159 SYNJ2O15056 1496 aa40.44■■■■■ 4.06
SSBP4-205ENST00000598159 SYNJ1O43426 1573 aa40.44■■■■■ 4.06
SSBP4-205ENST00000598159 PBRM1Q86U86 1689 aa40.43■■■■■ 4.06
SSBP4-205ENST00000598159 ABCA5Q8WWZ7 1642 aa40.42■■■■■ 4.06
SSBP4-205ENST00000598159 CYB5RLQ6IPT4 315 aa40.31■■■■■ 4.04
SSBP4-205ENST00000598159 CLASP1Q7Z460 1538 aa40.26■■■■■ 4.04
SSBP4-205ENST00000598159 ARAP1Q96P48 1450 aa40.14■■■■■ 4.02
SSBP4-205ENST00000598159 ERICH3Q5RHP9 1530 aa40.1■■■■■ 4.01
SSBP4-205ENST00000598159 FHAD1B1AJZ9 1412 aa40.08■■■■■ 4.01
SSBP4-205ENST00000598159 GRIN2AQ12879 1464 aa40.08■■■■■ 4.01
SSBP4-205ENST00000598159 ADAMTS12P58397 1594 aa40.07■■■■■ 4.01
SSBP4-205ENST00000598159 NUP160Q12769 1436 aa39.95■■■■□ 3.99
SSBP4-205ENST00000598159 CEP170Q5SW79 1584 aa39.88■■■■□ 3.97
SSBP4-205ENST00000598159 KIF27Q86VH2 1401 aa39.81■■■■□ 3.96
SSBP4-205ENST00000598159 IGF1RP08069 1367 aa39.75■■■■□ 3.95
SSBP4-205ENST00000598159 TRHP20396 242 aaPredicted RBP39.7■■■■□ 3.95
SSBP4-205ENST00000598159 SHROOM2Q13796 1616 aa39.68■■■■□ 3.94
SSBP4-205ENST00000598159 ERCC6L2Q5T890 1561 aa39.65■■■■□ 3.94
SSBP4-205ENST00000598159 JPH4Q96JJ6 628 aa39.65■■■■□ 3.94
SSBP4-205ENST00000598159 CUL7Q14999 1698 aa39.58■■■■□ 3.93
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms