RNA–Protein interactions for RNA: ENST00000597466.1

SHD-203, Transcript of Src homology 2 domain containing transforming protein D, humanhuman

TSL 2

Gene SHD, Length 289 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHD-203ENST00000597466 NISCHQ9Y2I1 1504 aa27.57■■■□□ 2
SHD-203ENST00000597466 ABCC9O60706 1549 aa24.94■■□□□ 1.58
SHD-203ENST00000597466 CCDC180Q9P1Z9 1646 aa24.76■■□□□ 1.55
SHD-203ENST00000597466 RB1CC1Q8TDY2 1594 aa23.61■■□□□ 1.37
SHD-203ENST00000597466 DNAJC5BQ9UF47 199 aa23.51■■□□□ 1.35
SHD-203ENST00000597466 NACADO15069 1562 aa23.41■■□□□ 1.34
SHD-203ENST00000597466 DCAF8L2P0C7V8 631 aa23.3■■□□□ 1.32
SHD-203ENST00000597466 PABPN1Q86U42 306 aaKnown RBP eCLIP23.2■■□□□ 1.3
SHD-203ENST00000597466 UNC13AQ9UPW8 1703 aa23.16■■□□□ 1.3
SHD-203ENST00000597466 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
SHD-203ENST00000597466 BICRAQ9NZM4 1560 aa23.01■■□□□ 1.27
SHD-203ENST00000597466 ZCCHC6Q5VYS8 1495 aaKnown RBP22.85■■□□□ 1.25
SHD-203ENST00000597466 DCAF1Q9Y4B6 1507 aa22.72■■□□□ 1.23
SHD-203ENST00000597466 SCRIBQ14160 1630 aa22.64■■□□□ 1.22
SHD-203ENST00000597466 SHROOM4Q9ULL8 1493 aa22.57■■□□□ 1.2
SHD-203ENST00000597466 CC2D2AQ9P2K1 1620 aa22.5■■□□□ 1.19
SHD-203ENST00000597466 CECR2Q9BXF3 1484 aa22.44■■□□□ 1.18
SHD-203ENST00000597466 EIF4G1Q04637 1599 aaKnown RBP22.43■■□□□ 1.18
SHD-203ENST00000597466 NCAPD3P42695 1498 aa21.63■■□□□ 1.05
SHD-203ENST00000597466 ATAD2BQ9ULI0 1458 aa21.58■■□□□ 1.05
SHD-203ENST00000597466 DNAJC5Q9H3Z4 198 aa21.57■■□□□ 1.04
SHD-203ENST00000597466 SMARCA4P51532 1647 aa21.55■■□□□ 1.04
SHD-203ENST00000597466 ERCC6Q03468 1493 aa21.49■■□□□ 1.03
SHD-203ENST00000597466 SMARCA2P51531 1590 aa21.48■■□□□ 1.03
SHD-203ENST00000597466 HMGXB3Q12766 1538 aa21.47■■□□□ 1.03
SHD-203ENST00000597466 CUX2O14529 1486 aa21.45■■□□□ 1.03
SHD-203ENST00000597466 NESP48681 1621 aa21.42■■□□□ 1.02
SHD-203ENST00000597466 BAZ1AQ9NRL2 1556 aaPredicted RBP21.39■■□□□ 1.01
SHD-203ENST00000597466 BAZ1BQ9UIG0 1483 aaKnown RBP21.36■■□□□ 1.01
SHD-203ENST00000597466 PEG3Q9GZU2 1588 aa21.31■■□□□ 1
SHD-203ENST00000597466 MROH2BQ7Z745 1585 aa21.29■■□□□ 1
SHD-203ENST00000597466 THOC2Q8NI27 1593 aaKnown RBP21.21■□□□□ 0.99
SHD-203ENST00000597466 LAMC3Q9Y6N6 1575 aa21.16■□□□□ 0.98
SHD-203ENST00000597466 KIF21AQ7Z4S6 1674 aa21.12■□□□□ 0.97
SHD-203ENST00000597466 WIZO95785 1651 aa21.03■□□□□ 0.96
SHD-203ENST00000597466 PDS5BQ9NTI5 1447 aa21.01■□□□□ 0.95
SHD-203ENST00000597466 CADPSQ9ULU8 1353 aa20.97■□□□□ 0.95
SHD-203ENST00000597466 MRC2Q9UBG0 1479 aa20.89■□□□□ 0.94
SHD-203ENST00000597466 WDR62O43379 1518 aa20.85■□□□□ 0.93
SHD-203ENST00000597466 RSF1Q96T23 1441 aaPredicted RBP20.78■□□□□ 0.92
SHD-203ENST00000597466 CEP164Q9UPV0 1460 aa20.78■□□□□ 0.92
SHD-203ENST00000597466 FANCD2Q9BXW9 1451 aa20.76■□□□□ 0.91
SHD-203ENST00000597466 CFTRP13569 1480 aa20.73■□□□□ 0.91
SHD-203ENST00000597466 TOP2AP11388 1531 aaKnown RBP20.72■□□□□ 0.91
SHD-203ENST00000597466 URB2Q14146 1524 aaKnown RBP20.63■□□□□ 0.89
SHD-203ENST00000597466 TRIM41Q8WV44 630 aa20.63■□□□□ 0.89
SHD-203ENST00000597466 PRDM2Q13029 1718 aa20.5■□□□□ 0.87
SHD-203ENST00000597466 CCDC88BA6NC98 1476 aa20.5■□□□□ 0.87
SHD-203ENST00000597466 OSCARQ8IYS5 282 aa20.43■□□□□ 0.86
SHD-203ENST00000597466 ZNF608Q9ULD9 1512 aaPredicted RBP20.42■□□□□ 0.86
SHD-203ENST00000597466 TOPBP1Q92547 1522 aa20.37■□□□□ 0.85
SHD-203ENST00000597466 IFT140Q96RY7 1462 aa20.36■□□□□ 0.85
SHD-203ENST00000597466 EIF4G3O43432 1585 aaKnown RBP20.28■□□□□ 0.84
SHD-203ENST00000597466 RIMBP3CA6NJZ7 1639 aa20.27■□□□□ 0.84
SHD-203ENST00000597466 RIMBP3BA6NNM3 1639 aa20.27■□□□□ 0.84
SHD-203ENST00000597466 RIMBP3Q9UFD9 1639 aa20.27■□□□□ 0.84
SHD-203ENST00000597466 DNMBPQ6XZF7 1577 aa20.27■□□□□ 0.84
SHD-203ENST00000597466 ABCC8Q09428 1581 aa20.21■□□□□ 0.83
SHD-203ENST00000597466 TARBP1Q13395 1621 aaKnown RBP20.21■□□□□ 0.83
SHD-203ENST00000597466 ARHGEF11O15085 1522 aa20.19■□□□□ 0.82
SHD-203ENST00000597466 AQRO60306 1485 aaKnown RBP eCLIP20.18■□□□□ 0.82
SHD-203ENST00000597466 POLA1P09884 1462 aaPredicted RBP20.16■□□□□ 0.82
SHD-203ENST00000597466 CHD1O14646 1710 aa20.15■□□□□ 0.82
SHD-203ENST00000597466 RAD54L2Q9Y4B4 1467 aa20.11■□□□□ 0.81
SHD-203ENST00000597466 TDRD9Q8NDG6 1382 aaKnown RBP20.05■□□□□ 0.8
SHD-203ENST00000597466 FBLN2P98095 1184 aa20.04■□□□□ 0.8
SHD-203ENST00000597466 SOGA1O94964 1423 aa20.02■□□□□ 0.8
SHD-203ENST00000597466 FGD5Q6ZNL6 1462 aa20.02■□□□□ 0.8
SHD-203ENST00000597466 CYB5RLQ6IPT4 315 aa20.01■□□□□ 0.79
SHD-203ENST00000597466 CUX1P39880 1505 aa20.01■□□□□ 0.79
SHD-203ENST00000597466 ARAP1Q96P48 1450 aa20■□□□□ 0.79
SHD-203ENST00000597466 SNAPC4Q5SXM2 1469 aa19.98■□□□□ 0.79
SHD-203ENST00000597466 CLASP1Q7Z460 1538 aa19.91■□□□□ 0.78
SHD-203ENST00000597466 WDR97A6NE52 1622 aa19.91■□□□□ 0.78
SHD-203ENST00000597466 GRIN2BQ13224 1484 aa19.86■□□□□ 0.77
SHD-203ENST00000597466 MAGI1Q96QZ7 1491 aaPredicted RBP19.86■□□□□ 0.77
SHD-203ENST00000597466 SYNJ1O43426 1573 aa19.83■□□□□ 0.77
SHD-203ENST00000597466 CHMP7Q8WUX9 453 aaPredicted RBP19.83■□□□□ 0.77
SHD-203ENST00000597466 PBRM1Q86U86 1689 aa19.83■□□□□ 0.76
SHD-203ENST00000597466 SYNJ2O15056 1496 aa19.82■□□□□ 0.76
SHD-203ENST00000597466 TRHP20396 242 aaPredicted RBP19.81■□□□□ 0.76
SHD-203ENST00000597466 GAPVD1Q14C86 1478 aa19.79■□□□□ 0.76
SHD-203ENST00000597466 SUPT5HO00267 1087 aaKnown RBP19.78■□□□□ 0.76
SHD-203ENST00000597466 ABCA5Q8WWZ7 1642 aa19.77■□□□□ 0.76
SHD-203ENST00000597466 ABCA10Q8WWZ4 1543 aa19.76■□□□□ 0.75
SHD-203ENST00000597466 ERCC6L2Q5T890 1561 aa19.65■□□□□ 0.74
SHD-203ENST00000597466 ADAMTS12P58397 1594 aa19.64■□□□□ 0.73
SHD-203ENST00000597466 BIVM-ERCC5R4GMW8 1640 aa19.63■□□□□ 0.73
SHD-203ENST00000597466 GRIN2AQ12879 1464 aa19.63■□□□□ 0.73
SHD-203ENST00000597466 WRNQ14191 1432 aaPredicted RBP eCLIP19.63■□□□□ 0.73
SHD-203ENST00000597466 TOP2BQ02880 1626 aa19.62■□□□□ 0.73
SHD-203ENST00000597466 CEP170Q5SW79 1584 aa19.61■□□□□ 0.73
SHD-203ENST00000597466 NUP160Q12769 1436 aa19.57■□□□□ 0.72
SHD-203ENST00000597466 FHAD1B1AJZ9 1412 aa19.52■□□□□ 0.72
SHD-203ENST00000597466 SHROOM2Q13796 1616 aa19.5■□□□□ 0.71
SHD-203ENST00000597466 ERICH3Q5RHP9 1530 aa19.49■□□□□ 0.71
SHD-203ENST00000597466 PRG4Q92954 1404 aaPredicted RBP19.39■□□□□ 0.69
SHD-203ENST00000597466 RUSC2Q8N2Y8 1516 aa19.37■□□□□ 0.69
SHD-203ENST00000597466 JPH4Q96JJ6 628 aa19.32■□□□□ 0.68
SHD-203ENST00000597466 KIF13AQ9H1H9 1805 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms