RNA–Protein interactions for RNA: ENST00000597453.1

TGFB1-202, Transcript of transforming growth factor beta 1, humanhuman

TSL 1 (best)

Gene TGFB1, Length 392 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFB1-202ENST00000597453 NISCHQ9Y2I1 1504 aa37.92■■■■□ 3.66
TGFB1-202ENST00000597453 CCDC180Q9P1Z9 1646 aa34■■■■□ 3.03
TGFB1-202ENST00000597453 ABCC9O60706 1549 aa33.84■■■■□ 3.01
TGFB1-202ENST00000597453 RB1CC1Q8TDY2 1594 aa32.26■■■□□ 2.75
TGFB1-202ENST00000597453 NACADO15069 1562 aa32.07■■■□□ 2.72
TGFB1-202ENST00000597453 DCAF8L2P0C7V8 631 aa31.88■■■□□ 2.69
TGFB1-202ENST00000597453 MYO15BQ96JP2 1530 aa31.66■■■□□ 2.66
TGFB1-202ENST00000597453 UNC13AQ9UPW8 1703 aa31.63■■■□□ 2.65
TGFB1-202ENST00000597453 DNAJC5BQ9UF47 199 aa31.62■■■□□ 2.65
TGFB1-202ENST00000597453 PABPN1Q86U42 306 aaKnown RBP eCLIP31.51■■■□□ 2.63
TGFB1-202ENST00000597453 ZCCHC6Q5VYS8 1495 aaKnown RBP31.47■■■□□ 2.63
TGFB1-202ENST00000597453 BICRAQ9NZM4 1560 aa31.37■■■□□ 2.61
TGFB1-202ENST00000597453 DCAF1Q9Y4B6 1507 aa31.32■■■□□ 2.6
TGFB1-202ENST00000597453 SCRIBQ14160 1630 aa31■■■□□ 2.55
TGFB1-202ENST00000597453 SHROOM4Q9ULL8 1493 aa30.89■■■□□ 2.53
TGFB1-202ENST00000597453 CC2D2AQ9P2K1 1620 aa30.6■■■□□ 2.49
TGFB1-202ENST00000597453 EIF4G1Q04637 1599 aaKnown RBP30.56■■■□□ 2.48
TGFB1-202ENST00000597453 CECR2Q9BXF3 1484 aa30.45■■■□□ 2.47
TGFB1-202ENST00000597453 NCAPD3P42695 1498 aa29.59■■■□□ 2.33
TGFB1-202ENST00000597453 SMARCA4P51532 1647 aa29.58■■■□□ 2.33
TGFB1-202ENST00000597453 ATAD2BQ9ULI0 1458 aa29.54■■■□□ 2.32
TGFB1-202ENST00000597453 SMARCA2P51531 1590 aa29.45■■■□□ 2.31
TGFB1-202ENST00000597453 BAZ1AQ9NRL2 1556 aaPredicted RBP29.42■■■□□ 2.3
TGFB1-202ENST00000597453 HMGXB3Q12766 1538 aa29.4■■■□□ 2.3
TGFB1-202ENST00000597453 PEG3Q9GZU2 1588 aa29.28■■■□□ 2.28
TGFB1-202ENST00000597453 BAZ1BQ9UIG0 1483 aaKnown RBP29.25■■■□□ 2.27
TGFB1-202ENST00000597453 MROH2BQ7Z745 1585 aa29.25■■■□□ 2.27
TGFB1-202ENST00000597453 ERCC6Q03468 1493 aa29.17■■■□□ 2.26
TGFB1-202ENST00000597453 NESP48681 1621 aa29.13■■■□□ 2.25
TGFB1-202ENST00000597453 CUX2O14529 1486 aa29.07■■■□□ 2.24
TGFB1-202ENST00000597453 WIZO95785 1651 aa28.93■■■□□ 2.22
TGFB1-202ENST00000597453 LAMC3Q9Y6N6 1575 aa28.92■■■□□ 2.22
TGFB1-202ENST00000597453 DNAJC5Q9H3Z4 198 aa28.88■■■□□ 2.21
TGFB1-202ENST00000597453 THOC2Q8NI27 1593 aaKnown RBP28.83■■■□□ 2.21
TGFB1-202ENST00000597453 KIF21AQ7Z4S6 1674 aa28.8■■■□□ 2.2
TGFB1-202ENST00000597453 PDS5BQ9NTI5 1447 aa28.7■■■□□ 2.19
TGFB1-202ENST00000597453 CADPSQ9ULU8 1353 aa28.69■■■□□ 2.18
TGFB1-202ENST00000597453 RSF1Q96T23 1441 aaPredicted RBP28.67■■■□□ 2.18
TGFB1-202ENST00000597453 TOP2AP11388 1531 aaKnown RBP28.54■■■□□ 2.16
TGFB1-202ENST00000597453 MRC2Q9UBG0 1479 aa28.49■■■□□ 2.15
TGFB1-202ENST00000597453 WDR62O43379 1518 aa28.44■■■□□ 2.14
TGFB1-202ENST00000597453 CFTRP13569 1480 aa28.41■■■□□ 2.14
TGFB1-202ENST00000597453 CEP164Q9UPV0 1460 aa28.4■■■□□ 2.14
TGFB1-202ENST00000597453 FANCD2Q9BXW9 1451 aa28.39■■■□□ 2.13
TGFB1-202ENST00000597453 PRDM2Q13029 1718 aa28.22■■■□□ 2.11
TGFB1-202ENST00000597453 CCDC88BA6NC98 1476 aa28.2■■■□□ 2.1
TGFB1-202ENST00000597453 URB2Q14146 1524 aaKnown RBP28.18■■■□□ 2.1
TGFB1-202ENST00000597453 TOPBP1Q92547 1522 aa27.88■■■□□ 2.05
TGFB1-202ENST00000597453 IFT140Q96RY7 1462 aa27.83■■■□□ 2.04
TGFB1-202ENST00000597453 ZNF608Q9ULD9 1512 aaPredicted RBP27.81■■■□□ 2.04
TGFB1-202ENST00000597453 DNMBPQ6XZF7 1577 aa27.8■■■□□ 2.04
TGFB1-202ENST00000597453 ABCC8Q09428 1581 aa27.77■■■□□ 2.04
TGFB1-202ENST00000597453 OSCARQ8IYS5 282 aa27.73■■■□□ 2.03
TGFB1-202ENST00000597453 TRIM41Q8WV44 630 aa27.68■■■□□ 2.02
TGFB1-202ENST00000597453 EIF4G3O43432 1585 aaKnown RBP27.68■■■□□ 2.02
TGFB1-202ENST00000597453 TARBP1Q13395 1621 aaKnown RBP27.65■■■□□ 2.02
TGFB1-202ENST00000597453 POLA1P09884 1462 aaPredicted RBP27.61■■■□□ 2.01
TGFB1-202ENST00000597453 AQRO60306 1485 aaKnown RBP eCLIP27.54■■■□□ 25e-7■■■■□ 24.7
TGFB1-202ENST00000597453 RAD54L2Q9Y4B4 1467 aa27.51■■□□□ 1.99
TGFB1-202ENST00000597453 SUPT5HO00267 1087 aaKnown RBP27.47■■□□□ 1.99
TGFB1-202ENST00000597453 CHD1O14646 1710 aa27.47■■□□□ 1.99
TGFB1-202ENST00000597453 CUX1P39880 1505 aa27.46■■□□□ 1.99
TGFB1-202ENST00000597453 RIMBP3CA6NJZ7 1639 aa27.45■■□□□ 1.99
TGFB1-202ENST00000597453 RIMBP3BA6NNM3 1639 aa27.45■■□□□ 1.99
TGFB1-202ENST00000597453 RIMBP3Q9UFD9 1639 aa27.45■■□□□ 1.99
TGFB1-202ENST00000597453 FGD5Q6ZNL6 1462 aa27.45■■□□□ 1.99
TGFB1-202ENST00000597453 SOGA1O94964 1423 aa27.45■■□□□ 1.98
TGFB1-202ENST00000597453 TDRD9Q8NDG6 1382 aaKnown RBP27.39■■□□□ 1.98
TGFB1-202ENST00000597453 ARHGEF11O15085 1522 aa27.36■■□□□ 1.97
TGFB1-202ENST00000597453 WDR97A6NE52 1622 aa27.34■■□□□ 1.97
TGFB1-202ENST00000597453 FBLN2P98095 1184 aa27.29■■□□□ 1.96
TGFB1-202ENST00000597453 SNAPC4Q5SXM2 1469 aa27.28■■□□□ 1.96
TGFB1-202ENST00000597453 GRIN2BQ13224 1484 aa27.2■■□□□ 1.95
TGFB1-202ENST00000597453 MAGI1Q96QZ7 1491 aaPredicted RBP27.19■■□□□ 1.94
TGFB1-202ENST00000597453 PBRM1Q86U86 1689 aa27.18■■□□□ 1.94
TGFB1-202ENST00000597453 ABCA10Q8WWZ4 1543 aa27.14■■□□□ 1.94
TGFB1-202ENST00000597453 ABCA5Q8WWZ7 1642 aa27.13■■□□□ 1.93
TGFB1-202ENST00000597453 GAPVD1Q14C86 1478 aa27.13■■□□□ 1.93
TGFB1-202ENST00000597453 CLASP1Q7Z460 1538 aa27.12■■□□□ 1.93
TGFB1-202ENST00000597453 CHMP7Q8WUX9 453 aaPredicted RBP27.11■■□□□ 1.93
TGFB1-202ENST00000597453 SYNJ2O15056 1496 aa27.11■■□□□ 1.93
TGFB1-202ENST00000597453 ARAP1Q96P48 1450 aa27.11■■□□□ 1.93
TGFB1-202ENST00000597453 CYB5RLQ6IPT4 315 aa27.1■■□□□ 1.93
TGFB1-202ENST00000597453 SYNJ1O43426 1573 aa27.09■■□□□ 1.93
TGFB1-202ENST00000597453 BIVM-ERCC5R4GMW8 1640 aa27.08■■□□□ 1.93
TGFB1-202ENST00000597453 TOP2BQ02880 1626 aa27.06■■□□□ 1.92
TGFB1-202ENST00000597453 WRNQ14191 1432 aaPredicted RBP eCLIP27.03■■□□□ 1.92
TGFB1-202ENST00000597453 ADAMTS12P58397 1594 aa26.91■■□□□ 1.9
TGFB1-202ENST00000597453 GRIN2AQ12879 1464 aa26.87■■□□□ 1.89
TGFB1-202ENST00000597453 CEP170Q5SW79 1584 aa26.8■■□□□ 1.88
TGFB1-202ENST00000597453 ERICH3Q5RHP9 1530 aa26.8■■□□□ 1.88
TGFB1-202ENST00000597453 FHAD1B1AJZ9 1412 aa26.78■■□□□ 1.88
TGFB1-202ENST00000597453 NUP160Q12769 1436 aa26.77■■□□□ 1.88
TGFB1-202ENST00000597453 ERCC6L2Q5T890 1561 aa26.74■■□□□ 1.87
TGFB1-202ENST00000597453 TRHP20396 242 aaPredicted RBP26.73■■□□□ 1.87
TGFB1-202ENST00000597453 SHROOM2Q13796 1616 aa26.68■■□□□ 1.86
TGFB1-202ENST00000597453 RUSC2Q8N2Y8 1516 aa26.54■■□□□ 1.84
TGFB1-202ENST00000597453 PRG4Q92954 1404 aaPredicted RBP26.49■■□□□ 1.83
TGFB1-202ENST00000597453 KIF27Q86VH2 1401 aa26.48■■□□□ 1.83
TGFB1-202ENST00000597453 IGF1RP08069 1367 aa26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms