RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 NISCHQ9Y2I1 1504 aa29.17■■■□□ 2.26
SHKBP1-213ENST00000597325 ABCC9O60706 1549 aa27.53■■■□□ 2
SHKBP1-213ENST00000597325 DNAJC5BQ9UF47 199 aa26.81■■□□□ 1.88
SHKBP1-213ENST00000597325 CCDC180Q9P1Z9 1646 aa26.6■■□□□ 1.85
SHKBP1-213ENST00000597325 RB1CC1Q8TDY2 1594 aa25.78■■□□□ 1.72
SHKBP1-213ENST00000597325 PABPN1Q86U42 306 aaKnown RBP eCLIP25.46■■□□□ 1.67
SHKBP1-213ENST00000597325 NACADO15069 1562 aa25.38■■□□□ 1.65
SHKBP1-213ENST00000597325 DNAJC5Q9H3Z4 198 aa25.3■■□□□ 1.64
SHKBP1-213ENST00000597325 UNC13AQ9UPW8 1703 aa25.24■■□□□ 1.63
SHKBP1-213ENST00000597325 BICRAQ9NZM4 1560 aa25.15■■□□□ 1.62
SHKBP1-213ENST00000597325 CECR2Q9BXF3 1484 aa24.92■■□□□ 1.58
SHKBP1-213ENST00000597325 DCAF8L2P0C7V8 631 aa24.9■■□□□ 1.58
SHKBP1-213ENST00000597325 CC2D2AQ9P2K1 1620 aa24.86■■□□□ 1.57
SHKBP1-213ENST00000597325 MYO15BQ96JP2 1530 aa24.76■■□□□ 1.55
SHKBP1-213ENST00000597325 SHROOM4Q9ULL8 1493 aa24.67■■□□□ 1.54
SHKBP1-213ENST00000597325 EIF4G1Q04637 1599 aaKnown RBP24.57■■□□□ 1.52
SHKBP1-213ENST00000597325 CUX2O14529 1486 aa24.17■■□□□ 1.46
SHKBP1-213ENST00000597325 SCRIBQ14160 1630 aa24.13■■□□□ 1.45
SHKBP1-213ENST00000597325 DCAF1Q9Y4B6 1507 aa24.06■■□□□ 1.44
SHKBP1-213ENST00000597325 ZCCHC6Q5VYS8 1495 aaKnown RBP23.97■■□□□ 1.43
SHKBP1-213ENST00000597325 ERCC6Q03468 1493 aa23.8■■□□□ 1.4
SHKBP1-213ENST00000597325 TRIM41Q8WV44 630 aa23.67■■□□□ 1.38
SHKBP1-213ENST00000597325 NCAPD3P42695 1498 aa23.48■■□□□ 1.35
SHKBP1-213ENST00000597325 NESP48681 1621 aa23.41■■□□□ 1.34
SHKBP1-213ENST00000597325 THOC2Q8NI27 1593 aaKnown RBP23.4■■□□□ 1.34
SHKBP1-213ENST00000597325 ATAD2BQ9ULI0 1458 aa23.24■■□□□ 1.31
SHKBP1-213ENST00000597325 HMGXB3Q12766 1538 aa23.2■■□□□ 1.3
SHKBP1-213ENST00000597325 SMARCA2P51531 1590 aa23.1■■□□□ 1.29
SHKBP1-213ENST00000597325 LAMC3Q9Y6N6 1575 aa23.07■■□□□ 1.28
SHKBP1-213ENST00000597325 KIF21AQ7Z4S6 1674 aa23.06■■□□□ 1.28
SHKBP1-213ENST00000597325 SMARCA4P51532 1647 aa22.96■■□□□ 1.27
SHKBP1-213ENST00000597325 PDS5BQ9NTI5 1447 aa22.95■■□□□ 1.26
SHKBP1-213ENST00000597325 BAZ1AQ9NRL2 1556 aaPredicted RBP22.93■■□□□ 1.26
SHKBP1-213ENST00000597325 BAZ1BQ9UIG0 1483 aaKnown RBP22.92■■□□□ 1.26
SHKBP1-213ENST00000597325 OSCARQ8IYS5 282 aa22.85■■□□□ 1.25
SHKBP1-213ENST00000597325 WDR62O43379 1518 aa22.83■■□□□ 1.25
SHKBP1-213ENST00000597325 MRC2Q9UBG0 1479 aa22.82■■□□□ 1.24
SHKBP1-213ENST00000597325 PEG3Q9GZU2 1588 aa22.8■■□□□ 1.24
SHKBP1-213ENST00000597325 RIMBP3CA6NJZ7 1639 aa22.71■■□□□ 1.23
SHKBP1-213ENST00000597325 RIMBP3BA6NNM3 1639 aa22.71■■□□□ 1.23
SHKBP1-213ENST00000597325 RIMBP3Q9UFD9 1639 aa22.71■■□□□ 1.23
SHKBP1-213ENST00000597325 CADPSQ9ULU8 1353 aa22.68■■□□□ 1.22
SHKBP1-213ENST00000597325 ARHGEF11O15085 1522 aa22.54■■□□□ 1.2
SHKBP1-213ENST00000597325 CEP164Q9UPV0 1460 aa22.51■■□□□ 1.19
SHKBP1-213ENST00000597325 MROH2BQ7Z745 1585 aa22.46■■□□□ 1.19
SHKBP1-213ENST00000597325 AEBP2Q6ZN18 517 aaPredicted RBP22.45■■□□□ 1.18
SHKBP1-213ENST00000597325 FANCD2Q9BXW9 1451 aa22.41■■□□□ 1.18
SHKBP1-213ENST00000597325 TRHP20396 242 aaPredicted RBP22.4■■□□□ 1.18
SHKBP1-213ENST00000597325 CYB5RLQ6IPT4 315 aa22.37■■□□□ 1.17
SHKBP1-213ENST00000597325 URB2Q14146 1524 aaKnown RBP22.33■■□□□ 1.17
SHKBP1-213ENST00000597325 ARAP1Q96P48 1450 aa22.27■■□□□ 1.16
SHKBP1-213ENST00000597325 CFTRP13569 1480 aa22.24■■□□□ 1.15
SHKBP1-213ENST00000597325 ZNF608Q9ULD9 1512 aaPredicted RBP22.21■■□□□ 1.15
SHKBP1-213ENST00000597325 WIZO95785 1651 aa22.14■■□□□ 1.13
SHKBP1-213ENST00000597325 IFT140Q96RY7 1462 aa22.11■■□□□ 1.13
SHKBP1-213ENST00000597325 RSF1Q96T23 1441 aaPredicted RBP22.07■■□□□ 1.12
SHKBP1-213ENST00000597325 CHD1O14646 1710 aa22.03■■□□□ 1.12
SHKBP1-213ENST00000597325 EIF4G3O43432 1585 aaKnown RBP22.01■■□□□ 1.11
SHKBP1-213ENST00000597325 PRDM2Q13029 1718 aa21.89■■□□□ 1.1
SHKBP1-213ENST00000597325 TOPBP1Q92547 1522 aa21.89■■□□□ 1.09
SHKBP1-213ENST00000597325 AQRO60306 1485 aaKnown RBP eCLIP21.86■■□□□ 1.09
SHKBP1-213ENST00000597325 FBLN2P98095 1184 aa21.81■■□□□ 1.08
SHKBP1-213ENST00000597325 CLASP1Q7Z460 1538 aa21.8■■□□□ 1.08
SHKBP1-213ENST00000597325 TARBP1Q13395 1621 aaKnown RBP21.8■■□□□ 1.08
SHKBP1-213ENST00000597325 TOP2AP11388 1531 aaKnown RBP21.77■■□□□ 1.08
SHKBP1-213ENST00000597325 ILDR1Q86SU0 546 aaPredicted RBP21.75■■□□□ 1.07
SHKBP1-213ENST00000597325 ABCC8Q09428 1581 aa21.74■■□□□ 1.07
SHKBP1-213ENST00000597325 DNMBPQ6XZF7 1577 aa21.71■■□□□ 1.07
SHKBP1-213ENST00000597325 SYNJ1O43426 1573 aa21.62■■□□□ 1.05
SHKBP1-213ENST00000597325 POLA1P09884 1462 aaPredicted RBP21.61■■□□□ 1.05
SHKBP1-213ENST00000597325 GAPVD1Q14C86 1478 aa21.6■■□□□ 1.05
SHKBP1-213ENST00000597325 SNAPC4Q5SXM2 1469 aa21.59■■□□□ 1.05
SHKBP1-213ENST00000597325 TDRD9Q8NDG6 1382 aaKnown RBP21.55■■□□□ 1.04
SHKBP1-213ENST00000597325 CCDC88BA6NC98 1476 aa21.55■■□□□ 1.04
SHKBP1-213ENST00000597325 RAD54L2Q9Y4B4 1467 aa21.54■■□□□ 1.04
SHKBP1-213ENST00000597325 CHMP7Q8WUX9 453 aaPredicted RBP21.53■■□□□ 1.04
SHKBP1-213ENST00000597325 MAGI1Q96QZ7 1491 aaPredicted RBP21.51■■□□□ 1.03
SHKBP1-213ENST00000597325 WDR97A6NE52 1622 aa21.48■■□□□ 1.03
SHKBP1-213ENST00000597325 SOGA1O94964 1423 aa21.46■■□□□ 1.03
SHKBP1-213ENST00000597325 SYNJ2O15056 1496 aa21.45■■□□□ 1.03
SHKBP1-213ENST00000597325 SUPT5HO00267 1087 aaKnown RBP21.44■■□□□ 1.02
SHKBP1-213ENST00000597325 KIF13AQ9H1H9 1805 aa21.43■■□□□ 1.02
SHKBP1-213ENST00000597325 KDM4FA0A1W2PPD8 638 aa21.42■■□□□ 1.02
SHKBP1-213ENST00000597325 GRIN2BQ13224 1484 aa21.39■■□□□ 1.02
SHKBP1-213ENST00000597325 ERCC6L2Q5T890 1561 aa21.39■■□□□ 1.01
SHKBP1-213ENST00000597325 FGD5Q6ZNL6 1462 aa21.31■■□□□ 1
SHKBP1-213ENST00000597325 PBRM1Q86U86 1689 aa21.24■□□□□ 0.99
SHKBP1-213ENST00000597325 CEP170Q5SW79 1584 aa21.23■□□□□ 0.99
SHKBP1-213ENST00000597325 ABCC10Q5T3U5 1492 aa21.17■□□□□ 0.98
SHKBP1-213ENST00000597325 SHROOM2Q13796 1616 aa21.16■□□□□ 0.98
SHKBP1-213ENST00000597325 CUX1P39880 1505 aa21.16■□□□□ 0.98
SHKBP1-213ENST00000597325 GRIN2AQ12879 1464 aa21.13■□□□□ 0.97
SHKBP1-213ENST00000597325 NUP160Q12769 1436 aa21.13■□□□□ 0.97
SHKBP1-213ENST00000597325 FAM69CQ0P6D2 419 aa21.13■□□□□ 0.97
SHKBP1-213ENST00000597325 KDM6BO15054 1643 aa21.12■□□□□ 0.97
SHKBP1-213ENST00000597325 ABCA5Q8WWZ7 1642 aa21.1■□□□□ 0.97
SHKBP1-213ENST00000597325 DIP2BQ9P265 1576 aa21.09■□□□□ 0.97
SHKBP1-213ENST00000597325 MAPKBP1O60336 1514 aa21.05■□□□□ 0.96
SHKBP1-213ENST00000597325 ABCA10Q8WWZ4 1543 aa21.04■□□□□ 0.96
SHKBP1-213ENST00000597325 HECW2Q9P2P5 1572 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms