RNA–Protein interactions for RNA: ENST00000597209.1

CHMP2A-203, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 2

Gene CHMP2A, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-203ENST00000597209 NISCHQ9Y2I1 1504 aa44.41■■■■■ 4.7
CHMP2A-203ENST00000597209 CCDC180Q9P1Z9 1646 aa39.7■■■■□ 3.95
CHMP2A-203ENST00000597209 ABCC9O60706 1549 aa39.22■■■■□ 3.87
CHMP2A-203ENST00000597209 RB1CC1Q8TDY2 1594 aa37.59■■■■□ 3.61
CHMP2A-203ENST00000597209 NACADO15069 1562 aa37.45■■■■□ 3.59
CHMP2A-203ENST00000597209 DCAF8L2P0C7V8 631 aa37.2■■■■□ 3.55
CHMP2A-203ENST00000597209 MYO15BQ96JP2 1530 aa37.13■■■■□ 3.53
CHMP2A-203ENST00000597209 ZCCHC6Q5VYS8 1495 aaKnown RBP36.88■■■■□ 3.5
CHMP2A-203ENST00000597209 DCAF1Q9Y4B6 1507 aa36.78■■■■□ 3.48
CHMP2A-203ENST00000597209 UNC13AQ9UPW8 1703 aa36.69■■■■□ 3.46
CHMP2A-203ENST00000597209 PABPN1Q86U42 306 aaKnown RBP eCLIP36.56■■■■□ 3.44
CHMP2A-203ENST00000597209 BICRAQ9NZM4 1560 aa36.46■■■■□ 3.43
CHMP2A-203ENST00000597209 DNAJC5BQ9UF47 199 aa36.46■■■■□ 3.43
CHMP2A-203ENST00000597209 SHROOM4Q9ULL8 1493 aa36.11■■■■□ 3.37
CHMP2A-203ENST00000597209 SCRIBQ14160 1630 aa36.1■■■■□ 3.37
CHMP2A-203ENST00000597209 EIF4G1Q04637 1599 aaKnown RBP35.52■■■■□ 3.28
CHMP2A-203ENST00000597209 CC2D2AQ9P2K1 1620 aa35.49■■■■□ 3.27
CHMP2A-203ENST00000597209 CECR2Q9BXF3 1484 aa35.33■■■■□ 3.25
CHMP2A-203ENST00000597209 NCAPD3P42695 1498 aa34.58■■■■□ 3.13
CHMP2A-203ENST00000597209 SMARCA4P51532 1647 aa34.54■■■■□ 3.12
CHMP2A-203ENST00000597209 ATAD2BQ9ULI0 1458 aa34.49■■■■□ 3.11
CHMP2A-203ENST00000597209 BAZ1AQ9NRL2 1556 aaPredicted RBP34.45■■■■□ 3.11
CHMP2A-203ENST00000597209 SMARCA2P51531 1590 aa34.44■■■■□ 3.1
CHMP2A-203ENST00000597209 HMGXB3Q12766 1538 aa34.35■■■■□ 3.09
CHMP2A-203ENST00000597209 PEG3Q9GZU2 1588 aa34.26■■■■□ 3.07
CHMP2A-203ENST00000597209 MROH2BQ7Z745 1585 aa34.19■■■■□ 3.06
CHMP2A-203ENST00000597209 BAZ1BQ9UIG0 1483 aaKnown RBP34.15■■■■□ 3.06
CHMP2A-203ENST00000597209 ERCC6Q03468 1493 aa33.85■■■■□ 3.01
CHMP2A-203ENST00000597209 NESP48681 1621 aa33.81■■■■□ 3
CHMP2A-203ENST00000597209 WIZO95785 1651 aa33.77■■■■□ 3
CHMP2A-203ENST00000597209 CUX2O14529 1486 aa33.74■■■□□ 2.99
CHMP2A-203ENST00000597209 LAMC3Q9Y6N6 1575 aa33.72■■■□□ 2.99
CHMP2A-203ENST00000597209 RSF1Q96T23 1441 aaPredicted RBP33.64■■■□□ 2.98
CHMP2A-203ENST00000597209 CADPSQ9ULU8 1353 aa33.52■■■□□ 2.96
CHMP2A-203ENST00000597209 PDS5BQ9NTI5 1447 aa33.51■■■□□ 2.95
CHMP2A-203ENST00000597209 TOP2AP11388 1531 aaKnown RBP33.43■■■□□ 2.94
CHMP2A-203ENST00000597209 THOC2Q8NI27 1593 aaKnown RBP33.43■■■□□ 2.94
CHMP2A-203ENST00000597209 KIF21AQ7Z4S6 1674 aa33.39■■■□□ 2.94
CHMP2A-203ENST00000597209 DNAJC5Q9H3Z4 198 aa33.25■■■□□ 2.91
CHMP2A-203ENST00000597209 CFTRP13569 1480 aa33.23■■■□□ 2.91
CHMP2A-203ENST00000597209 MRC2Q9UBG0 1479 aa33.17■■■□□ 2.9
CHMP2A-203ENST00000597209 FANCD2Q9BXW9 1451 aa33.11■■■□□ 2.89
CHMP2A-203ENST00000597209 CEP164Q9UPV0 1460 aa33.11■■■□□ 2.89
CHMP2A-203ENST00000597209 WDR62O43379 1518 aa33.09■■■□□ 2.89
CHMP2A-203ENST00000597209 CCDC88BA6NC98 1476 aa33.03■■■□□ 2.88
CHMP2A-203ENST00000597209 PRDM2Q13029 1718 aa32.91■■■□□ 2.86
CHMP2A-203ENST00000597209 URB2Q14146 1524 aaKnown RBP32.8■■■□□ 2.84
CHMP2A-203ENST00000597209 ABCC8Q09428 1581 aa32.55■■■□□ 2.8
CHMP2A-203ENST00000597209 TOPBP1Q92547 1522 aa32.53■■■□□ 2.8
CHMP2A-203ENST00000597209 IFT140Q96RY7 1462 aa32.47■■■□□ 2.79
CHMP2A-203ENST00000597209 DNMBPQ6XZF7 1577 aa32.46■■■□□ 2.79
CHMP2A-203ENST00000597209 SUPT5HO00267 1087 aaKnown RBP32.36■■■□□ 2.77
CHMP2A-203ENST00000597209 ZNF608Q9ULD9 1512 aaPredicted RBP32.31■■■□□ 2.76
CHMP2A-203ENST00000597209 OSCARQ8IYS5 282 aa32.24■■■□□ 2.75
CHMP2A-203ENST00000597209 TARBP1Q13395 1621 aaKnown RBP32.22■■■□□ 2.75
CHMP2A-203ENST00000597209 POLA1P09884 1462 aaPredicted RBP32.22■■■□□ 2.75
CHMP2A-203ENST00000597209 EIF4G3O43432 1585 aaKnown RBP32.16■■■□□ 2.74
CHMP2A-203ENST00000597209 CUX1P39880 1505 aa32.1■■■□□ 2.73
CHMP2A-203ENST00000597209 SOGA1O94964 1423 aa32.09■■■□□ 2.73
CHMP2A-203ENST00000597209 AQRO60306 1485 aaKnown RBP eCLIP32.08■■■□□ 2.736e-6■■□□□ 13.3
CHMP2A-203ENST00000597209 FGD5Q6ZNL6 1462 aa32.06■■■□□ 2.72
CHMP2A-203ENST00000597209 RAD54L2Q9Y4B4 1467 aa32.06■■■□□ 2.72
CHMP2A-203ENST00000597209 WDR97A6NE52 1622 aa31.99■■■□□ 2.71
CHMP2A-203ENST00000597209 TDRD9Q8NDG6 1382 aaKnown RBP31.94■■■□□ 2.7
CHMP2A-203ENST00000597209 TRIM41Q8WV44 630 aa31.85■■■□□ 2.69
CHMP2A-203ENST00000597209 CHD1O14646 1710 aa31.84■■■□□ 2.69
CHMP2A-203ENST00000597209 GRIN2BQ13224 1484 aa31.78■■■□□ 2.68
CHMP2A-203ENST00000597209 SNAPC4Q5SXM2 1469 aa31.77■■■□□ 2.68
CHMP2A-203ENST00000597209 ABCA10Q8WWZ4 1543 aa31.76■■■□□ 2.68
CHMP2A-203ENST00000597209 FBLN2P98095 1184 aa31.75■■■□□ 2.67
CHMP2A-203ENST00000597209 MAGI1Q96QZ7 1491 aaPredicted RBP31.75■■■□□ 2.67
CHMP2A-203ENST00000597209 RIMBP3CA6NJZ7 1639 aa31.74■■■□□ 2.67
CHMP2A-203ENST00000597209 RIMBP3BA6NNM3 1639 aa31.74■■■□□ 2.67
CHMP2A-203ENST00000597209 RIMBP3Q9UFD9 1639 aa31.74■■■□□ 2.67
CHMP2A-203ENST00000597209 WRNQ14191 1432 aaPredicted RBP eCLIP31.73■■■□□ 2.67
CHMP2A-203ENST00000597209 TOP2BQ02880 1626 aa31.72■■■□□ 2.67
CHMP2A-203ENST00000597209 BIVM-ERCC5R4GMW8 1640 aa31.72■■■□□ 2.67
CHMP2A-203ENST00000597209 GAPVD1Q14C86 1478 aa31.71■■■□□ 2.67
CHMP2A-203ENST00000597209 ARHGEF11O15085 1522 aa31.7■■■□□ 2.66
CHMP2A-203ENST00000597209 ABCA5Q8WWZ7 1642 aa31.66■■■□□ 2.66
CHMP2A-203ENST00000597209 SYNJ1O43426 1573 aa31.64■■■□□ 2.66
CHMP2A-203ENST00000597209 PBRM1Q86U86 1689 aa31.64■■■□□ 2.66
CHMP2A-203ENST00000597209 CHMP7Q8WUX9 453 aaPredicted RBP31.64■■■□□ 2.66
CHMP2A-203ENST00000597209 SYNJ2O15056 1496 aa31.62■■■□□ 2.65
CHMP2A-203ENST00000597209 CLASP1Q7Z460 1538 aa31.54■■■□□ 2.64
CHMP2A-203ENST00000597209 CYB5RLQ6IPT4 315 aa31.4■■■□□ 2.62
CHMP2A-203ENST00000597209 ARAP1Q96P48 1450 aa31.4■■■□□ 2.62
CHMP2A-203ENST00000597209 ERICH3Q5RHP9 1530 aa31.38■■■□□ 2.61
CHMP2A-203ENST00000597209 ADAMTS12P58397 1594 aa31.38■■■□□ 2.61
CHMP2A-203ENST00000597209 GRIN2AQ12879 1464 aa31.35■■■□□ 2.61
CHMP2A-203ENST00000597209 FHAD1B1AJZ9 1412 aa31.34■■■□□ 2.61
CHMP2A-203ENST00000597209 NUP160Q12769 1436 aa31.25■■■□□ 2.59
CHMP2A-203ENST00000597209 CEP170Q5SW79 1584 aa31.21■■■□□ 2.59
CHMP2A-203ENST00000597209 KIF27Q86VH2 1401 aa31.11■■■□□ 2.57
CHMP2A-203ENST00000597209 SHROOM2Q13796 1616 aa31.08■■■□□ 2.57
CHMP2A-203ENST00000597209 IGF1RP08069 1367 aa31.05■■■□□ 2.56
CHMP2A-203ENST00000597209 ERCC6L2Q5T890 1561 aa31.01■■■□□ 2.56
CHMP2A-203ENST00000597209 CUL7Q14999 1698 aa30.99■■■□□ 2.55
CHMP2A-203ENST00000597209 JPH4Q96JJ6 628 aa30.93■■■□□ 2.54
CHMP2A-203ENST00000597209 RUSC2Q8N2Y8 1516 aa30.93■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms