RNA–Protein interactions for RNA: ENST00000596624.1

PNKP-208, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 548 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-208ENST00000596624 NISCHQ9Y2I1 1504 aa26.86■■□□□ 1.89
PNKP-208ENST00000596624 CCDC180Q9P1Z9 1646 aa24.13■■□□□ 1.45
PNKP-208ENST00000596624 ABCC9O60706 1549 aa24.03■■□□□ 1.44
PNKP-208ENST00000596624 RB1CC1Q8TDY2 1594 aa22.93■■□□□ 1.26
PNKP-208ENST00000596624 NACADO15069 1562 aa22.83■■□□□ 1.25
PNKP-208ENST00000596624 DNAJC5BQ9UF47 199 aa22.67■■□□□ 1.22
PNKP-208ENST00000596624 MYO15BQ96JP2 1530 aa22.61■■□□□ 1.21
PNKP-208ENST00000596624 DCAF8L2P0C7V8 631 aa22.45■■□□□ 1.18
PNKP-208ENST00000596624 UNC13AQ9UPW8 1703 aa22.42■■□□□ 1.18
PNKP-208ENST00000596624 PABPN1Q86U42 306 aaKnown RBP eCLIP22.35■■□□□ 1.17
PNKP-208ENST00000596624 BICRAQ9NZM4 1560 aa22.33■■□□□ 1.16
PNKP-208ENST00000596624 DCAF1Q9Y4B6 1507 aa22.28■■□□□ 1.16
PNKP-208ENST00000596624 ZCCHC6Q5VYS8 1495 aaKnown RBP22.26■■□□□ 1.15
PNKP-208ENST00000596624 SHROOM4Q9ULL8 1493 aa22.09■■□□□ 1.13
PNKP-208ENST00000596624 SCRIBQ14160 1630 aa21.84■■□□□ 1.09
PNKP-208ENST00000596624 CC2D2AQ9P2K1 1620 aa21.77■■□□□ 1.07
PNKP-208ENST00000596624 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
PNKP-208ENST00000596624 CECR2Q9BXF3 1484 aa21.71■■□□□ 1.07
PNKP-208ENST00000596624 NCAPD3P42695 1498 aa21.11■□□□□ 0.97
PNKP-208ENST00000596624 ATAD2BQ9ULI0 1458 aa20.99■□□□□ 0.95
PNKP-208ENST00000596624 SMARCA4P51532 1647 aa20.93■□□□□ 0.94
PNKP-208ENST00000596624 HMGXB3Q12766 1538 aa20.92■□□□□ 0.94
PNKP-208ENST00000596624 SMARCA2P51531 1590 aa20.92■□□□□ 0.94
PNKP-208ENST00000596624 DNAJC5Q9H3Z4 198 aa20.86■□□□□ 0.93
PNKP-208ENST00000596624 CUX2O14529 1486 aa20.83■□□□□ 0.93
PNKP-208ENST00000596624 PEG3Q9GZU2 1588 aa20.83■□□□□ 0.92
PNKP-208ENST00000596624 BAZ1AQ9NRL2 1556 aaPredicted RBP20.83■□□□□ 0.92
PNKP-208ENST00000596624 ERCC6Q03468 1493 aa20.73■□□□□ 0.91
PNKP-208ENST00000596624 BAZ1BQ9UIG0 1483 aaKnown RBP20.72■□□□□ 0.91
PNKP-208ENST00000596624 MROH2BQ7Z745 1585 aa20.66■□□□□ 0.9
PNKP-208ENST00000596624 NESP48681 1621 aa20.66■□□□□ 0.9
PNKP-208ENST00000596624 LAMC3Q9Y6N6 1575 aa20.59■□□□□ 0.89
PNKP-208ENST00000596624 THOC2Q8NI27 1593 aaKnown RBP20.51■□□□□ 0.87
PNKP-208ENST00000596624 PDS5BQ9NTI5 1447 aa20.44■□□□□ 0.86
PNKP-208ENST00000596624 CADPSQ9ULU8 1353 aa20.42■□□□□ 0.86
PNKP-208ENST00000596624 KIF21AQ7Z4S6 1674 aa20.38■□□□□ 0.85
PNKP-208ENST00000596624 WIZO95785 1651 aa20.37■□□□□ 0.85
PNKP-208ENST00000596624 MRC2Q9UBG0 1479 aa20.25■□□□□ 0.83
PNKP-208ENST00000596624 RSF1Q96T23 1441 aaPredicted RBP20.25■□□□□ 0.83
PNKP-208ENST00000596624 WDR62O43379 1518 aa20.24■□□□□ 0.83
PNKP-208ENST00000596624 CFTRP13569 1480 aa20.2■□□□□ 0.82
PNKP-208ENST00000596624 TOP2AP11388 1531 aaKnown RBP20.16■□□□□ 0.82
PNKP-208ENST00000596624 CEP164Q9UPV0 1460 aa20.15■□□□□ 0.82
PNKP-208ENST00000596624 FANCD2Q9BXW9 1451 aa20.14■□□□□ 0.81
PNKP-208ENST00000596624 URB2Q14146 1524 aaKnown RBP19.99■□□□□ 0.79
PNKP-208ENST00000596624 PRDM2Q13029 1718 aa19.94■□□□□ 0.78
PNKP-208ENST00000596624 CCDC88BA6NC98 1476 aa19.92■□□□□ 0.78
PNKP-208ENST00000596624 OSCARQ8IYS5 282 aa19.83■□□□□ 0.77
PNKP-208ENST00000596624 IFT140Q96RY7 1462 aa19.79■□□□□ 0.76
PNKP-208ENST00000596624 TOPBP1Q92547 1522 aa19.77■□□□□ 0.76
PNKP-208ENST00000596624 ABCC8Q09428 1581 aa19.77■□□□□ 0.76
PNKP-208ENST00000596624 ZNF608Q9ULD9 1512 aaPredicted RBP19.73■□□□□ 0.75
PNKP-208ENST00000596624 TRIM41Q8WV44 630 aa19.73■□□□□ 0.75
PNKP-208ENST00000596624 DNMBPQ6XZF7 1577 aa19.7■□□□□ 0.74
PNKP-208ENST00000596624 TARBP1Q13395 1621 aaKnown RBP19.62■□□□□ 0.73
PNKP-208ENST00000596624 EIF4G3O43432 1585 aaKnown RBP19.6■□□□□ 0.73
PNKP-208ENST00000596624 POLA1P09884 1462 aaPredicted RBP19.57■□□□□ 0.72
PNKP-208ENST00000596624 RIMBP3CA6NJZ7 1639 aa19.56■□□□□ 0.72
PNKP-208ENST00000596624 RIMBP3BA6NNM3 1639 aa19.56■□□□□ 0.72
PNKP-208ENST00000596624 RIMBP3Q9UFD9 1639 aa19.56■□□□□ 0.72
PNKP-208ENST00000596624 AQRO60306 1485 aaKnown RBP eCLIP19.53■□□□□ 0.72
PNKP-208ENST00000596624 ARHGEF11O15085 1522 aa19.51■□□□□ 0.71
PNKP-208ENST00000596624 WDR97A6NE52 1622 aa19.47■□□□□ 0.71
PNKP-208ENST00000596624 SOGA1O94964 1423 aa19.46■□□□□ 0.71
PNKP-208ENST00000596624 RAD54L2Q9Y4B4 1467 aa19.45■□□□□ 0.7
PNKP-208ENST00000596624 CHD1O14646 1710 aa19.44■□□□□ 0.7
PNKP-208ENST00000596624 CUX1P39880 1505 aa19.41■□□□□ 0.7
PNKP-208ENST00000596624 FGD5Q6ZNL6 1462 aa19.41■□□□□ 0.7
PNKP-208ENST00000596624 TDRD9Q8NDG6 1382 aaKnown RBP19.4■□□□□ 0.7
PNKP-208ENST00000596624 MAGI1Q96QZ7 1491 aaPredicted RBP19.34■□□□□ 0.69
PNKP-208ENST00000596624 ARAP1Q96P48 1450 aa19.33■□□□□ 0.68
PNKP-208ENST00000596624 SNAPC4Q5SXM2 1469 aa19.32■□□□□ 0.68
PNKP-208ENST00000596624 GRIN2BQ13224 1484 aa19.31■□□□□ 0.68
PNKP-208ENST00000596624 CYB5RLQ6IPT4 315 aa19.31■□□□□ 0.68
PNKP-208ENST00000596624 CLASP1Q7Z460 1538 aa19.3■□□□□ 0.68
PNKP-208ENST00000596624 FBLN2P98095 1184 aa19.3■□□□□ 0.68
PNKP-208ENST00000596624 SYNJ2O15056 1496 aa19.26■□□□□ 0.67
PNKP-208ENST00000596624 ABCA10Q8WWZ4 1543 aa19.25■□□□□ 0.67
PNKP-208ENST00000596624 SYNJ1O43426 1573 aa19.23■□□□□ 0.67
PNKP-208ENST00000596624 CHMP7Q8WUX9 453 aaPredicted RBP19.23■□□□□ 0.67
PNKP-208ENST00000596624 GAPVD1Q14C86 1478 aa19.22■□□□□ 0.67
PNKP-208ENST00000596624 ABCA5Q8WWZ7 1642 aa19.21■□□□□ 0.67
PNKP-208ENST00000596624 PBRM1Q86U86 1689 aa19.18■□□□□ 0.66
PNKP-208ENST00000596624 SUPT5HO00267 1087 aaKnown RBP19.14■□□□□ 0.65
PNKP-208ENST00000596624 WRNQ14191 1432 aaPredicted RBP eCLIP19.12■□□□□ 0.65
PNKP-208ENST00000596624 TOP2BQ02880 1626 aa19.11■□□□□ 0.65
PNKP-208ENST00000596624 BIVM-ERCC5R4GMW8 1640 aa19.11■□□□□ 0.65
PNKP-208ENST00000596624 GRIN2AQ12879 1464 aa19.05■□□□□ 0.64
PNKP-208ENST00000596624 NUP160Q12769 1436 aa19.05■□□□□ 0.64
PNKP-208ENST00000596624 ADAMTS12P58397 1594 aa19.03■□□□□ 0.64
PNKP-208ENST00000596624 TRHP20396 242 aaPredicted RBP19.02■□□□□ 0.64
PNKP-208ENST00000596624 FHAD1B1AJZ9 1412 aa19■□□□□ 0.63
PNKP-208ENST00000596624 ERICH3Q5RHP9 1530 aa19■□□□□ 0.63
PNKP-208ENST00000596624 CEP170Q5SW79 1584 aa18.98■□□□□ 0.63
PNKP-208ENST00000596624 SHROOM2Q13796 1616 aa18.96■□□□□ 0.63
PNKP-208ENST00000596624 ERCC6L2Q5T890 1561 aa18.93■□□□□ 0.62
PNKP-208ENST00000596624 JPH4Q96JJ6 628 aa18.81■□□□□ 0.6
PNKP-208ENST00000596624 PRG4Q92954 1404 aaPredicted RBP18.78■□□□□ 0.6
PNKP-208ENST00000596624 RUSC2Q8N2Y8 1516 aa18.77■□□□□ 0.6
PNKP-208ENST00000596624 IGF1RP08069 1367 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms