RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 NISCHQ9Y2I1 1504 aa26.65■■□□□ 1.86
LIG1-211ENST00000596457 CCDC180Q9P1Z9 1646 aa23.66■■□□□ 1.38
LIG1-211ENST00000596457 ABCC9O60706 1549 aa23.33■■□□□ 1.32
LIG1-211ENST00000596457 DNAJC5BQ9UF47 199 aa22.75■■□□□ 1.23
LIG1-211ENST00000596457 DCAF8L2P0C7V8 631 aa22.46■■□□□ 1.19
LIG1-211ENST00000596457 RB1CC1Q8TDY2 1594 aa22.41■■□□□ 1.18
LIG1-211ENST00000596457 NACADO15069 1562 aa22.32■■□□□ 1.16
LIG1-211ENST00000596457 ZCCHC6Q5VYS8 1495 aaKnown RBP22.19■■□□□ 1.14
LIG1-211ENST00000596457 MYO15BQ96JP2 1530 aa22.12■■□□□ 1.13
LIG1-211ENST00000596457 DCAF1Q9Y4B6 1507 aa21.97■■□□□ 1.11
LIG1-211ENST00000596457 UNC13AQ9UPW8 1703 aa21.84■■□□□ 1.09
LIG1-211ENST00000596457 PABPN1Q86U42 306 aaKnown RBP eCLIP21.74■■□□□ 1.071e-6■■■□□ 17.2
LIG1-211ENST00000596457 SCRIBQ14160 1630 aa21.7■■□□□ 1.06
LIG1-211ENST00000596457 DNAJC5Q9H3Z4 198 aa21.68■■□□□ 1.06
LIG1-211ENST00000596457 BICRAQ9NZM4 1560 aa21.65■■□□□ 1.06
LIG1-211ENST00000596457 SHROOM4Q9ULL8 1493 aa21.53■■□□□ 1.04
LIG1-211ENST00000596457 EIF4G1Q04637 1599 aaKnown RBP21.14■□□□□ 0.97
LIG1-211ENST00000596457 CC2D2AQ9P2K1 1620 aa21.12■□□□□ 0.97
LIG1-211ENST00000596457 CECR2Q9BXF3 1484 aa21.03■□□□□ 0.96
LIG1-211ENST00000596457 SMARCA4P51532 1647 aa20.7■□□□□ 0.9
LIG1-211ENST00000596457 BAZ1AQ9NRL2 1556 aaPredicted RBP20.66■□□□□ 0.9
LIG1-211ENST00000596457 NCAPD3P42695 1498 aa20.58■□□□□ 0.89
LIG1-211ENST00000596457 MROH2BQ7Z745 1585 aa20.58■□□□□ 0.88
LIG1-211ENST00000596457 ATAD2BQ9ULI0 1458 aa20.54■□□□□ 0.88
LIG1-211ENST00000596457 SMARCA2P51531 1590 aa20.52■□□□□ 0.88
LIG1-211ENST00000596457 HMGXB3Q12766 1538 aa20.44■□□□□ 0.86
LIG1-211ENST00000596457 BAZ1BQ9UIG0 1483 aaKnown RBP20.42■□□□□ 0.86
LIG1-211ENST00000596457 WIZO95785 1651 aa20.42■□□□□ 0.86
LIG1-211ENST00000596457 CUX2O14529 1486 aa20.41■□□□□ 0.86
LIG1-211ENST00000596457 PEG3Q9GZU2 1588 aa20.41■□□□□ 0.86
LIG1-211ENST00000596457 TRIM41Q8WV44 630 aa20.37■□□□□ 0.85
LIG1-211ENST00000596457 RSF1Q96T23 1441 aaPredicted RBP20.34■□□□□ 0.85
LIG1-211ENST00000596457 ERCC6Q03468 1493 aa20.18■□□□□ 0.82
LIG1-211ENST00000596457 TOP2AP11388 1531 aaKnown RBP20.12■□□□□ 0.81
LIG1-211ENST00000596457 LAMC3Q9Y6N6 1575 aa20.1■□□□□ 0.81
LIG1-211ENST00000596457 NESP48681 1621 aa20.09■□□□□ 0.81
LIG1-211ENST00000596457 SUPT5HO00267 1087 aaKnown RBP20.02■□□□□ 0.8
LIG1-211ENST00000596457 PDS5BQ9NTI5 1447 aa19.98■□□□□ 0.79
LIG1-211ENST00000596457 CADPSQ9ULU8 1353 aa19.96■□□□□ 0.79
LIG1-211ENST00000596457 CCDC88BA6NC98 1476 aa19.92■□□□□ 0.78
LIG1-211ENST00000596457 KIF21AQ7Z4S6 1674 aa19.87■□□□□ 0.77
LIG1-211ENST00000596457 THOC2Q8NI27 1593 aaKnown RBP19.87■□□□□ 0.77
LIG1-211ENST00000596457 CFTRP13569 1480 aa19.79■□□□□ 0.76
LIG1-211ENST00000596457 MRC2Q9UBG0 1479 aa19.74■□□□□ 0.75
LIG1-211ENST00000596457 PRDM2Q13029 1718 aa19.74■□□□□ 0.75
LIG1-211ENST00000596457 FANCD2Q9BXW9 1451 aa19.73■□□□□ 0.75
LIG1-211ENST00000596457 CEP164Q9UPV0 1460 aa19.72■□□□□ 0.75
LIG1-211ENST00000596457 WDR62O43379 1518 aa19.68■□□□□ 0.74
LIG1-211ENST00000596457 URB2Q14146 1524 aaKnown RBP19.53■□□□□ 0.72
LIG1-211ENST00000596457 AEBP2Q6ZN18 517 aaPredicted RBP19.44■□□□□ 0.7
LIG1-211ENST00000596457 ABCC8Q09428 1581 aa19.44■□□□□ 0.7
LIG1-211ENST00000596457 TOPBP1Q92547 1522 aa19.41■□□□□ 0.7
LIG1-211ENST00000596457 DNMBPQ6XZF7 1577 aa19.4■□□□□ 0.7
LIG1-211ENST00000596457 IFT140Q96RY7 1462 aa19.34■□□□□ 0.69
LIG1-211ENST00000596457 CUX1P39880 1505 aa19.3■□□□□ 0.68
LIG1-211ENST00000596457 OSCARQ8IYS5 282 aa19.29■□□□□ 0.68
LIG1-211ENST00000596457 POLA1P09884 1462 aaPredicted RBP19.24■□□□□ 0.67
LIG1-211ENST00000596457 FGD5Q6ZNL6 1462 aa19.23■□□□□ 0.67
LIG1-211ENST00000596457 RIMBP3CA6NJZ7 1639 aa19.23■□□□□ 0.67
LIG1-211ENST00000596457 RIMBP3BA6NNM3 1639 aa19.23■□□□□ 0.67
LIG1-211ENST00000596457 RIMBP3Q9UFD9 1639 aa19.23■□□□□ 0.67
LIG1-211ENST00000596457 RAD54L2Q9Y4B4 1467 aa19.22■□□□□ 0.67
LIG1-211ENST00000596457 ZNF608Q9ULD9 1512 aaPredicted RBP19.2■□□□□ 0.66
LIG1-211ENST00000596457 SOGA1O94964 1423 aa19.2■□□□□ 0.66
LIG1-211ENST00000596457 WRNQ14191 1432 aaPredicted RBP eCLIP19.19■□□□□ 0.66
LIG1-211ENST00000596457 TARBP1Q13395 1621 aaKnown RBP19.19■□□□□ 0.66
LIG1-211ENST00000596457 SYNJ1O43426 1573 aa19.16■□□□□ 0.66
LIG1-211ENST00000596457 TRHP20396 242 aaPredicted RBP19.16■□□□□ 0.66
LIG1-211ENST00000596457 BIVM-ERCC5R4GMW8 1640 aa19.14■□□□□ 0.66
LIG1-211ENST00000596457 EIF4G3O43432 1585 aaKnown RBP19.14■□□□□ 0.65
LIG1-211ENST00000596457 TOP2BQ02880 1626 aa19.14■□□□□ 0.65
LIG1-211ENST00000596457 AQRO60306 1485 aaKnown RBP eCLIP19.13■□□□□ 0.65
LIG1-211ENST00000596457 TDRD9Q8NDG6 1382 aaKnown RBP19.11■□□□□ 0.65
LIG1-211ENST00000596457 WDR97A6NE52 1622 aa19.08■□□□□ 0.65
LIG1-211ENST00000596457 ARHGEF11O15085 1522 aa19.02■□□□□ 0.64
LIG1-211ENST00000596457 ABCA10Q8WWZ4 1543 aa19■□□□□ 0.63
LIG1-211ENST00000596457 FBLN2P98095 1184 aa18.98■□□□□ 0.63
LIG1-211ENST00000596457 PBRM1Q86U86 1689 aa18.98■□□□□ 0.63
LIG1-211ENST00000596457 CYB5RLQ6IPT4 315 aa18.97■□□□□ 0.63
LIG1-211ENST00000596457 GAPVD1Q14C86 1478 aa18.97■□□□□ 0.63
LIG1-211ENST00000596457 CHD1O14646 1710 aa18.95■□□□□ 0.62
LIG1-211ENST00000596457 GRIN2BQ13224 1484 aa18.94■□□□□ 0.62
LIG1-211ENST00000596457 SNAPC4Q5SXM2 1469 aa18.94■□□□□ 0.62
LIG1-211ENST00000596457 ABCA5Q8WWZ7 1642 aa18.93■□□□□ 0.62
LIG1-211ENST00000596457 MAGI1Q96QZ7 1491 aaPredicted RBP18.91■□□□□ 0.62
LIG1-211ENST00000596457 CHMP7Q8WUX9 453 aaPredicted RBP18.87■□□□□ 0.61
LIG1-211ENST00000596457 SYNJ2O15056 1496 aa18.83■□□□□ 0.6
LIG1-211ENST00000596457 ILDR1Q86SU0 546 aaPredicted RBP18.8■□□□□ 0.6
LIG1-211ENST00000596457 KIF27Q86VH2 1401 aa18.78■□□□□ 0.6
LIG1-211ENST00000596457 ERICH3Q5RHP9 1530 aa18.78■□□□□ 0.6
LIG1-211ENST00000596457 ARAP1Q96P48 1450 aa18.77■□□□□ 0.59
LIG1-211ENST00000596457 ADAMTS12P58397 1594 aa18.76■□□□□ 0.59
LIG1-211ENST00000596457 CLASP1Q7Z460 1538 aa18.74■□□□□ 0.59
LIG1-211ENST00000596457 FHAD1B1AJZ9 1412 aa18.73■□□□□ 0.59
LIG1-211ENST00000596457 GRIN2AQ12879 1464 aa18.7■□□□□ 0.58
LIG1-211ENST00000596457 IGF1RP08069 1367 aa18.69■□□□□ 0.58
LIG1-211ENST00000596457 RUSC2Q8N2Y8 1516 aa18.69■□□□□ 0.58
LIG1-211ENST00000596457 CUL7Q14999 1698 aa18.66■□□□□ 0.58
LIG1-211ENST00000596457 CHIC1Q5VXU3 224 aa18.64■□□□□ 0.57
LIG1-211ENST00000596457 CARMIL1Q5VZK9 1371 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms