RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 NISCHQ9Y2I1 1504 aa40.11■■■■■ 4.01
USHBP1-206ENST00000596436 CCDC180Q9P1Z9 1646 aa36.12■■■■□ 3.37
USHBP1-206ENST00000596436 ABCC9O60706 1549 aa36.1■■■■□ 3.37
USHBP1-206ENST00000596436 RB1CC1Q8TDY2 1594 aa34.39■■■■□ 3.1
USHBP1-206ENST00000596436 NACADO15069 1562 aa34.15■■■■□ 3.06
USHBP1-206ENST00000596436 DNAJC5BQ9UF47 199 aa34.02■■■■□ 3.04
USHBP1-206ENST00000596436 MYO15BQ96JP2 1530 aa33.72■■■□□ 2.99
USHBP1-206ENST00000596436 UNC13AQ9UPW8 1703 aa33.65■■■□□ 2.98
USHBP1-206ENST00000596436 DCAF8L2P0C7V8 631 aa33.64■■■□□ 2.98
USHBP1-206ENST00000596436 PABPN1Q86U42 306 aaKnown RBP eCLIP33.52■■■□□ 2.96
USHBP1-206ENST00000596436 BICRAQ9NZM4 1560 aa33.45■■■□□ 2.95
USHBP1-206ENST00000596436 ZCCHC6Q5VYS8 1495 aaKnown RBP33.25■■■□□ 2.91
USHBP1-206ENST00000596436 DCAF1Q9Y4B6 1507 aa33.22■■■□□ 2.91
USHBP1-206ENST00000596436 SHROOM4Q9ULL8 1493 aa33.04■■■□□ 2.88
USHBP1-206ENST00000596436 SCRIBQ14160 1630 aa32.77■■■□□ 2.84
USHBP1-206ENST00000596436 CC2D2AQ9P2K1 1620 aa32.67■■■□□ 2.82
USHBP1-206ENST00000596436 EIF4G1Q04637 1599 aaKnown RBP32.6■■■□□ 2.81
USHBP1-206ENST00000596436 CECR2Q9BXF3 1484 aa32.57■■■□□ 2.8
USHBP1-206ENST00000596436 NCAPD3P42695 1498 aa31.53■■■□□ 2.64
USHBP1-206ENST00000596436 ATAD2BQ9ULI0 1458 aa31.38■■■□□ 2.61
USHBP1-206ENST00000596436 DNAJC5Q9H3Z4 198 aa31.36■■■□□ 2.61
USHBP1-206ENST00000596436 SMARCA4P51532 1647 aa31.33■■■□□ 2.61
USHBP1-206ENST00000596436 HMGXB3Q12766 1538 aa31.3■■■□□ 2.6
USHBP1-206ENST00000596436 SMARCA2P51531 1590 aa31.29■■■□□ 2.6
USHBP1-206ENST00000596436 CUX2O14529 1486 aa31.27■■■□□ 2.6
USHBP1-206ENST00000596436 ERCC6Q03468 1493 aa31.15■■■□□ 2.58
USHBP1-206ENST00000596436 BAZ1AQ9NRL2 1556 aaPredicted RBP31.14■■■□□ 2.58
USHBP1-206ENST00000596436 PEG3Q9GZU2 1588 aa31.1■■■□□ 2.57
USHBP1-206ENST00000596436 BAZ1BQ9UIG0 1483 aaKnown RBP31.02■■■□□ 2.56
USHBP1-206ENST00000596436 NESP48681 1621 aa31.01■■■□□ 2.55
USHBP1-206ENST00000596436 MROH2BQ7Z745 1585 aa30.88■■■□□ 2.53
USHBP1-206ENST00000596436 LAMC3Q9Y6N6 1575 aa30.84■■■□□ 2.53
USHBP1-206ENST00000596436 THOC2Q8NI27 1593 aaKnown RBP30.81■■■□□ 2.52
USHBP1-206ENST00000596436 KIF21AQ7Z4S6 1674 aa30.65■■■□□ 2.5
USHBP1-206ENST00000596436 PDS5BQ9NTI5 1447 aa30.6■■■□□ 2.49
USHBP1-206ENST00000596436 CADPSQ9ULU8 1353 aa30.51■■■□□ 2.47
USHBP1-206ENST00000596436 WIZO95785 1651 aa30.49■■■□□ 2.47
USHBP1-206ENST00000596436 MRC2Q9UBG0 1479 aa30.37■■■□□ 2.45
USHBP1-206ENST00000596436 WDR62O43379 1518 aa30.35■■■□□ 2.45
USHBP1-206ENST00000596436 CEP164Q9UPV0 1460 aa30.2■■■□□ 2.43
USHBP1-206ENST00000596436 RSF1Q96T23 1441 aaPredicted RBP30.19■■■□□ 2.42
USHBP1-206ENST00000596436 CFTRP13569 1480 aa30.18■■■□□ 2.42
USHBP1-206ENST00000596436 FANCD2Q9BXW9 1451 aa30.15■■■□□ 2.42
USHBP1-206ENST00000596436 TOP2AP11388 1531 aaKnown RBP30.13■■■□□ 2.41
USHBP1-206ENST00000596436 URB2Q14146 1524 aaKnown RBP29.95■■■□□ 2.38
USHBP1-206ENST00000596436 PRDM2Q13029 1718 aa29.89■■■□□ 2.38
USHBP1-206ENST00000596436 TRIM41Q8WV44 630 aa29.76■■■□□ 2.35
USHBP1-206ENST00000596436 CCDC88BA6NC98 1476 aa29.75■■■□□ 2.35
USHBP1-206ENST00000596436 OSCARQ8IYS5 282 aa29.71■■■□□ 2.35
USHBP1-206ENST00000596436 IFT140Q96RY7 1462 aa29.62■■■□□ 2.33
USHBP1-206ENST00000596436 TOPBP1Q92547 1522 aa29.59■■■□□ 2.33
USHBP1-206ENST00000596436 ZNF608Q9ULD9 1512 aaPredicted RBP29.57■■■□□ 2.32
USHBP1-206ENST00000596436 ABCC8Q09428 1581 aa29.53■■■□□ 2.32
USHBP1-206ENST00000596436 DNMBPQ6XZF7 1577 aa29.48■■■□□ 2.31
USHBP1-206ENST00000596436 EIF4G3O43432 1585 aaKnown RBP29.43■■■□□ 2.3
USHBP1-206ENST00000596436 RIMBP3CA6NJZ7 1639 aa29.42■■■□□ 2.3
USHBP1-206ENST00000596436 RIMBP3BA6NNM3 1639 aa29.42■■■□□ 2.3
USHBP1-206ENST00000596436 RIMBP3Q9UFD9 1639 aa29.42■■■□□ 2.3
USHBP1-206ENST00000596436 TARBP1Q13395 1621 aaKnown RBP29.39■■■□□ 2.3
USHBP1-206ENST00000596436 ARHGEF11O15085 1522 aa29.31■■■□□ 2.28
USHBP1-206ENST00000596436 POLA1P09884 1462 aaPredicted RBP29.28■■■□□ 2.28
USHBP1-206ENST00000596436 AQRO60306 1485 aaKnown RBP eCLIP29.25■■■□□ 2.27
USHBP1-206ENST00000596436 CHD1O14646 1710 aa29.23■■■□□ 2.27
USHBP1-206ENST00000596436 RAD54L2Q9Y4B4 1467 aa29.12■■■□□ 2.25
USHBP1-206ENST00000596436 WDR97A6NE52 1622 aa29.12■■■□□ 2.25
USHBP1-206ENST00000596436 SOGA1O94964 1423 aa29.09■■■□□ 2.25
USHBP1-206ENST00000596436 FGD5Q6ZNL6 1462 aa29.05■■■□□ 2.24
USHBP1-206ENST00000596436 CUX1P39880 1505 aa29.04■■■□□ 2.24
USHBP1-206ENST00000596436 TDRD9Q8NDG6 1382 aaKnown RBP29.03■■■□□ 2.24
USHBP1-206ENST00000596436 ARAP1Q96P48 1450 aa29.02■■■□□ 2.24
USHBP1-206ENST00000596436 SNAPC4Q5SXM2 1469 aa28.97■■■□□ 2.23
USHBP1-206ENST00000596436 CYB5RLQ6IPT4 315 aa28.97■■■□□ 2.23
USHBP1-206ENST00000596436 CLASP1Q7Z460 1538 aa28.95■■■□□ 2.23
USHBP1-206ENST00000596436 FBLN2P98095 1184 aa28.95■■■□□ 2.22
USHBP1-206ENST00000596436 MAGI1Q96QZ7 1491 aaPredicted RBP28.93■■■□□ 2.22
USHBP1-206ENST00000596436 GRIN2BQ13224 1484 aa28.89■■■□□ 2.22
USHBP1-206ENST00000596436 SYNJ1O43426 1573 aa28.85■■■□□ 2.21
USHBP1-206ENST00000596436 SYNJ2O15056 1496 aa28.83■■■□□ 2.21
USHBP1-206ENST00000596436 PBRM1Q86U86 1689 aa28.8■■■□□ 2.2
USHBP1-206ENST00000596436 CHMP7Q8WUX9 453 aaPredicted RBP28.78■■■□□ 2.2
USHBP1-206ENST00000596436 ABCA10Q8WWZ4 1543 aa28.76■■■□□ 2.19
USHBP1-206ENST00000596436 GAPVD1Q14C86 1478 aa28.76■■■□□ 2.19
USHBP1-206ENST00000596436 ABCA5Q8WWZ7 1642 aa28.76■■■□□ 2.19
USHBP1-206ENST00000596436 TRHP20396 242 aaPredicted RBP28.64■■■□□ 2.18
USHBP1-206ENST00000596436 SUPT5HO00267 1087 aaKnown RBP28.61■■■□□ 2.17
USHBP1-206ENST00000596436 BIVM-ERCC5R4GMW8 1640 aa28.58■■■□□ 2.17
USHBP1-206ENST00000596436 WRNQ14191 1432 aaPredicted RBP eCLIP28.55■■■□□ 2.16
USHBP1-206ENST00000596436 TOP2BQ02880 1626 aa28.54■■■□□ 2.16
USHBP1-206ENST00000596436 GRIN2AQ12879 1464 aa28.53■■■□□ 2.16
USHBP1-206ENST00000596436 ADAMTS12P58397 1594 aa28.53■■■□□ 2.16
USHBP1-206ENST00000596436 NUP160Q12769 1436 aa28.48■■■□□ 2.15
USHBP1-206ENST00000596436 CEP170Q5SW79 1584 aa28.45■■■□□ 2.15
USHBP1-206ENST00000596436 ERCC6L2Q5T890 1561 aa28.43■■■□□ 2.14
USHBP1-206ENST00000596436 SHROOM2Q13796 1616 aa28.41■■■□□ 2.14
USHBP1-206ENST00000596436 ERICH3Q5RHP9 1530 aa28.4■■■□□ 2.14
USHBP1-206ENST00000596436 FHAD1B1AJZ9 1412 aa28.4■■■□□ 2.14
USHBP1-206ENST00000596436 RUSC2Q8N2Y8 1516 aa28.14■■■□□ 2.1
USHBP1-206ENST00000596436 PRG4Q92954 1404 aaPredicted RBP28.13■■■□□ 2.09
USHBP1-206ENST00000596436 JPH4Q96JJ6 628 aa28.08■■■□□ 2.09
USHBP1-206ENST00000596436 KIF13AQ9H1H9 1805 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms