RNA–Protein interactions for RNA: ENST00000596136.5

USE1-207, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 1 (best) BASIC

Gene USE1, Length 637 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-207ENST00000596136 NISCHQ9Y2I1 1504 aa32.15■■■□□ 2.74
USE1-207ENST00000596136 CCDC180Q9P1Z9 1646 aa28.65■■■□□ 2.18
USE1-207ENST00000596136 ABCC9O60706 1549 aa28.17■■■□□ 2.1
USE1-207ENST00000596136 RB1CC1Q8TDY2 1594 aa27.05■■□□□ 1.92
USE1-207ENST00000596136 NACADO15069 1562 aa27.01■■□□□ 1.91
USE1-207ENST00000596136 MYO15BQ96JP2 1530 aa26.84■■□□□ 1.89
USE1-207ENST00000596136 DCAF8L2P0C7V8 631 aa26.83■■□□□ 1.89
USE1-207ENST00000596136 ZCCHC6Q5VYS8 1495 aaKnown RBP26.74■■□□□ 1.87
USE1-207ENST00000596136 DCAF1Q9Y4B6 1507 aa26.64■■□□□ 1.85
USE1-207ENST00000596136 UNC13AQ9UPW8 1703 aa26.44■■□□□ 1.82
USE1-207ENST00000596136 PABPN1Q86U42 306 aaKnown RBP eCLIP26.3■■□□□ 1.8
USE1-207ENST00000596136 BICRAQ9NZM4 1560 aa26.28■■□□□ 1.8
USE1-207ENST00000596136 DNAJC5BQ9UF47 199 aa26.11■■□□□ 1.77
USE1-207ENST00000596136 SCRIBQ14160 1630 aa26.06■■□□□ 1.76
USE1-207ENST00000596136 SHROOM4Q9ULL8 1493 aa26.01■■□□□ 1.75
USE1-207ENST00000596136 EIF4G1Q04637 1599 aaKnown RBP25.56■■□□□ 1.68
USE1-207ENST00000596136 CC2D2AQ9P2K1 1620 aa25.5■■□□□ 1.67
USE1-207ENST00000596136 CECR2Q9BXF3 1484 aa25.36■■□□□ 1.65
USE1-207ENST00000596136 SMARCA4P51532 1647 aa24.96■■□□□ 1.59
USE1-207ENST00000596136 NCAPD3P42695 1498 aa24.96■■□□□ 1.59
USE1-207ENST00000596136 BAZ1AQ9NRL2 1556 aaPredicted RBP24.92■■□□□ 1.58
USE1-207ENST00000596136 ATAD2BQ9ULI0 1458 aa24.9■■□□□ 1.58
USE1-207ENST00000596136 SMARCA2P51531 1590 aa24.84■■□□□ 1.57
USE1-207ENST00000596136 PEG3Q9GZU2 1588 aa24.78■■□□□ 1.56
USE1-207ENST00000596136 HMGXB3Q12766 1538 aa24.77■■□□□ 1.56
USE1-207ENST00000596136 MROH2BQ7Z745 1585 aa24.76■■□□□ 1.55
USE1-207ENST00000596136 BAZ1BQ9UIG0 1483 aaKnown RBP24.64■■□□□ 1.54
USE1-207ENST00000596136 WIZO95785 1651 aa24.46■■□□□ 1.51
USE1-207ENST00000596136 RSF1Q96T23 1441 aaPredicted RBP24.43■■□□□ 1.5
USE1-207ENST00000596136 NESP48681 1621 aa24.34■■□□□ 1.49
USE1-207ENST00000596136 LAMC3Q9Y6N6 1575 aa24.28■■□□□ 1.48
USE1-207ENST00000596136 ERCC6Q03468 1493 aa24.27■■□□□ 1.48
USE1-207ENST00000596136 TOP2AP11388 1531 aaKnown RBP24.2■■□□□ 1.46
USE1-207ENST00000596136 CADPSQ9ULU8 1353 aa24.19■■□□□ 1.46
USE1-207ENST00000596136 CUX2O14529 1486 aa24.16■■□□□ 1.46
USE1-207ENST00000596136 PDS5BQ9NTI5 1447 aa24.12■■□□□ 1.45
USE1-207ENST00000596136 KIF21AQ7Z4S6 1674 aa24.03■■□□□ 1.44
USE1-207ENST00000596136 THOC2Q8NI27 1593 aaKnown RBP24.03■■□□□ 1.44
USE1-207ENST00000596136 CFTRP13569 1480 aa24■■□□□ 1.43
USE1-207ENST00000596136 CCDC88BA6NC98 1476 aa23.93■■□□□ 1.42
USE1-207ENST00000596136 FANCD2Q9BXW9 1451 aa23.87■■□□□ 1.41
USE1-207ENST00000596136 MRC2Q9UBG0 1479 aa23.87■■□□□ 1.41
USE1-207ENST00000596136 CEP164Q9UPV0 1460 aa23.85■■□□□ 1.41
USE1-207ENST00000596136 WDR62O43379 1518 aa23.81■■□□□ 1.4
USE1-207ENST00000596136 PRDM2Q13029 1718 aa23.77■■□□□ 1.4
USE1-207ENST00000596136 DNAJC5Q9H3Z4 198 aa23.68■■□□□ 1.38
USE1-207ENST00000596136 URB2Q14146 1524 aaKnown RBP23.66■■□□□ 1.38
USE1-207ENST00000596136 SUPT5HO00267 1087 aaKnown RBP23.56■■□□□ 1.36
USE1-207ENST00000596136 ABCC8Q09428 1581 aa23.49■■□□□ 1.35
USE1-207ENST00000596136 TOPBP1Q92547 1522 aa23.48■■□□□ 1.35
USE1-207ENST00000596136 DNMBPQ6XZF7 1577 aa23.43■■□□□ 1.34
USE1-207ENST00000596136 IFT140Q96RY7 1462 aa23.38■■□□□ 1.33
USE1-207ENST00000596136 ZNF608Q9ULD9 1512 aaPredicted RBP23.28■■□□□ 1.32
USE1-207ENST00000596136 POLA1P09884 1462 aaPredicted RBP23.27■■□□□ 1.32
USE1-207ENST00000596136 TARBP1Q13395 1621 aaKnown RBP23.25■■□□□ 1.31
USE1-207ENST00000596136 CUX1P39880 1505 aa23.23■■□□□ 1.31
USE1-207ENST00000596136 SOGA1O94964 1423 aa23.17■■□□□ 1.3
USE1-207ENST00000596136 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
USE1-207ENST00000596136 EIF4G3O43432 1585 aaKnown RBP23.15■■□□□ 1.3
USE1-207ENST00000596136 RAD54L2Q9Y4B4 1467 aa23.15■■□□□ 1.3
USE1-207ENST00000596136 OSCARQ8IYS5 282 aa23.13■■□□□ 1.29
USE1-207ENST00000596136 AQRO60306 1485 aaKnown RBP eCLIP23.12■■□□□ 1.299e-7■■■■■ 33.4
USE1-207ENST00000596136 WDR97A6NE52 1622 aa23.08■■□□□ 1.28
USE1-207ENST00000596136 TDRD9Q8NDG6 1382 aaKnown RBP23.05■■□□□ 1.28
USE1-207ENST00000596136 WRNQ14191 1432 aaPredicted RBP eCLIP23■■□□□ 1.27
USE1-207ENST00000596136 TOP2BQ02880 1626 aa22.99■■□□□ 1.27
USE1-207ENST00000596136 BIVM-ERCC5R4GMW8 1640 aa22.98■■□□□ 1.27
USE1-207ENST00000596136 ABCA10Q8WWZ4 1543 aa22.97■■□□□ 1.27
USE1-207ENST00000596136 SYNJ1O43426 1573 aa22.94■■□□□ 1.26
USE1-207ENST00000596136 GRIN2BQ13224 1484 aa22.92■■□□□ 1.26
USE1-207ENST00000596136 CHD1O14646 1710 aa22.9■■□□□ 1.26
USE1-207ENST00000596136 GAPVD1Q14C86 1478 aa22.89■■□□□ 1.25
USE1-207ENST00000596136 SNAPC4Q5SXM2 1469 aa22.89■■□□□ 1.25
USE1-207ENST00000596136 MAGI1Q96QZ7 1491 aaPredicted RBP22.89■■□□□ 1.25
USE1-207ENST00000596136 ABCA5Q8WWZ7 1642 aa22.87■■□□□ 1.25
USE1-207ENST00000596136 FBLN2P98095 1184 aa22.83■■□□□ 1.25
USE1-207ENST00000596136 PBRM1Q86U86 1689 aa22.83■■□□□ 1.24
USE1-207ENST00000596136 SYNJ2O15056 1496 aa22.8■■□□□ 1.24
USE1-207ENST00000596136 CHMP7Q8WUX9 453 aaPredicted RBP22.78■■□□□ 1.24
USE1-207ENST00000596136 RIMBP3CA6NJZ7 1639 aa22.75■■□□□ 1.23
USE1-207ENST00000596136 RIMBP3BA6NNM3 1639 aa22.75■■□□□ 1.23
USE1-207ENST00000596136 RIMBP3Q9UFD9 1639 aa22.75■■□□□ 1.23
USE1-207ENST00000596136 ARHGEF11O15085 1522 aa22.72■■□□□ 1.23
USE1-207ENST00000596136 CLASP1Q7Z460 1538 aa22.7■■□□□ 1.22
USE1-207ENST00000596136 TRIM41Q8WV44 630 aa22.69■■□□□ 1.22
USE1-207ENST00000596136 ERICH3Q5RHP9 1530 aa22.68■■□□□ 1.22
USE1-207ENST00000596136 ADAMTS12P58397 1594 aa22.65■■□□□ 1.22
USE1-207ENST00000596136 FHAD1B1AJZ9 1412 aa22.64■■□□□ 1.21
USE1-207ENST00000596136 GRIN2AQ12879 1464 aa22.62■■□□□ 1.21
USE1-207ENST00000596136 NUP160Q12769 1436 aa22.56■■□□□ 1.2
USE1-207ENST00000596136 KIF27Q86VH2 1401 aa22.54■■□□□ 1.2
USE1-207ENST00000596136 ARAP1Q96P48 1450 aa22.54■■□□□ 1.2
USE1-207ENST00000596136 CYB5RLQ6IPT4 315 aa22.52■■□□□ 1.2
USE1-207ENST00000596136 IGF1RP08069 1367 aa22.51■■□□□ 1.19
USE1-207ENST00000596136 CEP170Q5SW79 1584 aa22.51■■□□□ 1.19
USE1-207ENST00000596136 CUL7Q14999 1698 aa22.42■■□□□ 1.18
USE1-207ENST00000596136 SHROOM2Q13796 1616 aa22.41■■□□□ 1.18
USE1-207ENST00000596136 CARMIL1Q5VZK9 1371 aa22.35■■□□□ 1.17
USE1-207ENST00000596136 ERCC6L2Q5T890 1561 aa22.34■■□□□ 1.17
USE1-207ENST00000596136 JPH4Q96JJ6 628 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms