RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 NISCHQ9Y2I1 1504 aa27.21■■□□□ 1.95
VRK3-210ENST00000596121 CCDC180Q9P1Z9 1646 aa24.1■■□□□ 1.45
VRK3-210ENST00000596121 ABCC9O60706 1549 aa23.72■■□□□ 1.39
VRK3-210ENST00000596121 DCAF8L2P0C7V8 631 aa22.77■■□□□ 1.24
VRK3-210ENST00000596121 RB1CC1Q8TDY2 1594 aa22.72■■□□□ 1.23
VRK3-210ENST00000596121 NACADO15069 1562 aa22.7■■□□□ 1.22
VRK3-210ENST00000596121 ZCCHC6Q5VYS8 1495 aaKnown RBP22.66■■□□□ 1.22
VRK3-210ENST00000596121 MYO15BQ96JP2 1530 aa22.56■■□□□ 1.2
VRK3-210ENST00000596121 DCAF1Q9Y4B6 1507 aa22.47■■□□□ 1.19
VRK3-210ENST00000596121 UNC13AQ9UPW8 1703 aa22.23■■□□□ 1.15
VRK3-210ENST00000596121 PABPN1Q86U42 306 aaKnown RBP eCLIP22.23■■□□□ 1.15
VRK3-210ENST00000596121 BICRAQ9NZM4 1560 aa22.13■■□□□ 1.13
VRK3-210ENST00000596121 SCRIBQ14160 1630 aa22.06■■□□□ 1.12
VRK3-210ENST00000596121 DNAJC5BQ9UF47 199 aa21.92■■□□□ 1.1
VRK3-210ENST00000596121 SHROOM4Q9ULL8 1493 aa21.76■■□□□ 1.07
VRK3-210ENST00000596121 EIF4G1Q04637 1599 aaKnown RBP21.5■■□□□ 1.03
VRK3-210ENST00000596121 CC2D2AQ9P2K1 1620 aa21.42■■□□□ 1.02
VRK3-210ENST00000596121 CECR2Q9BXF3 1484 aa21.29■■□□□ 1
VRK3-210ENST00000596121 SMARCA4P51532 1647 aa21.09■□□□□ 0.97
VRK3-210ENST00000596121 BAZ1AQ9NRL2 1556 aaPredicted RBP21.03■□□□□ 0.96
VRK3-210ENST00000596121 ATAD2BQ9ULI0 1458 aa21.02■□□□□ 0.96
VRK3-210ENST00000596121 MROH2BQ7Z745 1585 aa21.02■□□□□ 0.95
VRK3-210ENST00000596121 NCAPD3P42695 1498 aa21.01■□□□□ 0.95
VRK3-210ENST00000596121 SMARCA2P51531 1590 aa20.92■□□□□ 0.94
VRK3-210ENST00000596121 PEG3Q9GZU2 1588 aa20.89■□□□□ 0.93
VRK3-210ENST00000596121 HMGXB3Q12766 1538 aa20.83■□□□□ 0.93
VRK3-210ENST00000596121 BAZ1BQ9UIG0 1483 aaKnown RBP20.8■□□□□ 0.92
VRK3-210ENST00000596121 RSF1Q96T23 1441 aaPredicted RBP20.78■□□□□ 0.92
VRK3-210ENST00000596121 WIZO95785 1651 aa20.75■□□□□ 0.91
VRK3-210ENST00000596121 NESP48681 1621 aa20.56■□□□□ 0.88
VRK3-210ENST00000596121 TOP2AP11388 1531 aaKnown RBP20.5■□□□□ 0.87
VRK3-210ENST00000596121 CADPSQ9ULU8 1353 aa20.39■□□□□ 0.85
VRK3-210ENST00000596121 LAMC3Q9Y6N6 1575 aa20.38■□□□□ 0.85
VRK3-210ENST00000596121 ERCC6Q03468 1493 aa20.37■□□□□ 0.85
VRK3-210ENST00000596121 CCDC88BA6NC98 1476 aa20.32■□□□□ 0.84
VRK3-210ENST00000596121 CFTRP13569 1480 aa20.26■□□□□ 0.83
VRK3-210ENST00000596121 PDS5BQ9NTI5 1447 aa20.26■□□□□ 0.83
VRK3-210ENST00000596121 SUPT5HO00267 1087 aaKnown RBP20.24■□□□□ 0.83
VRK3-210ENST00000596121 KIF21AQ7Z4S6 1674 aa20.23■□□□□ 0.83
VRK3-210ENST00000596121 THOC2Q8NI27 1593 aaKnown RBP20.17■□□□□ 0.82
VRK3-210ENST00000596121 CUX2O14529 1486 aa20.16■□□□□ 0.82
VRK3-210ENST00000596121 FANCD2Q9BXW9 1451 aa20.14■□□□□ 0.81
VRK3-210ENST00000596121 CEP164Q9UPV0 1460 aa20.09■□□□□ 0.81
VRK3-210ENST00000596121 MRC2Q9UBG0 1479 aa20.08■□□□□ 0.81
VRK3-210ENST00000596121 WDR62O43379 1518 aa20.02■□□□□ 0.79
VRK3-210ENST00000596121 PRDM2Q13029 1718 aa19.99■□□□□ 0.79
VRK3-210ENST00000596121 URB2Q14146 1524 aaKnown RBP19.98■□□□□ 0.79
VRK3-210ENST00000596121 TOPBP1Q92547 1522 aa19.83■□□□□ 0.77
VRK3-210ENST00000596121 DNMBPQ6XZF7 1577 aa19.77■□□□□ 0.76
VRK3-210ENST00000596121 ABCC8Q09428 1581 aa19.74■□□□□ 0.75
VRK3-210ENST00000596121 CUX1P39880 1505 aa19.7■□□□□ 0.74
VRK3-210ENST00000596121 IFT140Q96RY7 1462 aa19.67■□□□□ 0.74
VRK3-210ENST00000596121 ZNF608Q9ULD9 1512 aaPredicted RBP19.67■□□□□ 0.74
VRK3-210ENST00000596121 POLA1P09884 1462 aaPredicted RBP19.67■□□□□ 0.74
VRK3-210ENST00000596121 DNAJC5Q9H3Z4 198 aa19.65■□□□□ 0.74
VRK3-210ENST00000596121 RAD54L2Q9Y4B4 1467 aa19.62■□□□□ 0.73
VRK3-210ENST00000596121 TARBP1Q13395 1621 aaKnown RBP19.62■□□□□ 0.73
VRK3-210ENST00000596121 FGD5Q6ZNL6 1462 aa19.61■□□□□ 0.73
VRK3-210ENST00000596121 SOGA1O94964 1423 aa19.59■□□□□ 0.73
VRK3-210ENST00000596121 AQRO60306 1485 aaKnown RBP eCLIP19.55■□□□□ 0.72
VRK3-210ENST00000596121 WRNQ14191 1432 aaPredicted RBP eCLIP19.53■□□□□ 0.72
VRK3-210ENST00000596121 TDRD9Q8NDG6 1382 aaKnown RBP19.52■□□□□ 0.72
VRK3-210ENST00000596121 SYNJ1O43426 1573 aa19.51■□□□□ 0.71
VRK3-210ENST00000596121 EIF4G3O43432 1585 aaKnown RBP19.51■□□□□ 0.71
VRK3-210ENST00000596121 TOP2BQ02880 1626 aa19.47■□□□□ 0.71
VRK3-210ENST00000596121 BIVM-ERCC5R4GMW8 1640 aa19.46■□□□□ 0.71
VRK3-210ENST00000596121 ABCA10Q8WWZ4 1543 aa19.41■□□□□ 0.7
VRK3-210ENST00000596121 WDR97A6NE52 1622 aa19.4■□□□□ 0.7
VRK3-210ENST00000596121 OSCARQ8IYS5 282 aa19.37■□□□□ 0.69
VRK3-210ENST00000596121 GAPVD1Q14C86 1478 aa19.34■□□□□ 0.69
VRK3-210ENST00000596121 GRIN2BQ13224 1484 aa19.33■□□□□ 0.68
VRK3-210ENST00000596121 SNAPC4Q5SXM2 1469 aa19.33■□□□□ 0.68
VRK3-210ENST00000596121 ABCA5Q8WWZ7 1642 aa19.32■□□□□ 0.68
VRK3-210ENST00000596121 FBLN2P98095 1184 aa19.28■□□□□ 0.68
VRK3-210ENST00000596121 CHD1O14646 1710 aa19.25■□□□□ 0.67
VRK3-210ENST00000596121 MAGI1Q96QZ7 1491 aaPredicted RBP19.25■□□□□ 0.67
VRK3-210ENST00000596121 PBRM1Q86U86 1689 aa19.24■□□□□ 0.67
VRK3-210ENST00000596121 CHMP7Q8WUX9 453 aaPredicted RBP19.21■□□□□ 0.67
VRK3-210ENST00000596121 SYNJ2O15056 1496 aa19.21■□□□□ 0.67
VRK3-210ENST00000596121 ERICH3Q5RHP9 1530 aa19.14■□□□□ 0.65
VRK3-210ENST00000596121 ADAMTS12P58397 1594 aa19.12■□□□□ 0.65
VRK3-210ENST00000596121 FHAD1B1AJZ9 1412 aa19.11■□□□□ 0.65
VRK3-210ENST00000596121 IGF1RP08069 1367 aa19.11■□□□□ 0.65
VRK3-210ENST00000596121 KIF27Q86VH2 1401 aa19.1■□□□□ 0.65
VRK3-210ENST00000596121 GRIN2AQ12879 1464 aa19.09■□□□□ 0.65
VRK3-210ENST00000596121 TRIM41Q8WV44 630 aa19.08■□□□□ 0.64
VRK3-210ENST00000596121 CLASP1Q7Z460 1538 aa19.08■□□□□ 0.64
VRK3-210ENST00000596121 RIMBP3CA6NJZ7 1639 aa19.05■□□□□ 0.64
VRK3-210ENST00000596121 RIMBP3BA6NNM3 1639 aa19.05■□□□□ 0.64
VRK3-210ENST00000596121 RIMBP3Q9UFD9 1639 aa19.05■□□□□ 0.64
VRK3-210ENST00000596121 ARHGEF11O15085 1522 aa19.05■□□□□ 0.64
VRK3-210ENST00000596121 RUSC2Q8N2Y8 1516 aa19.05■□□□□ 0.64
VRK3-210ENST00000596121 NUP160Q12769 1436 aa19.02■□□□□ 0.64
VRK3-210ENST00000596121 CEP170Q5SW79 1584 aa19.01■□□□□ 0.63
VRK3-210ENST00000596121 CARMIL1Q5VZK9 1371 aa18.95■□□□□ 0.62
VRK3-210ENST00000596121 CUL7Q14999 1698 aa18.92■□□□□ 0.62
VRK3-210ENST00000596121 ARAP1Q96P48 1450 aa18.92■□□□□ 0.62
VRK3-210ENST00000596121 CYB5RLQ6IPT4 315 aa18.92■□□□□ 0.62
VRK3-210ENST00000596121 CHIC1Q5VXU3 224 aa18.91■□□□□ 0.62
VRK3-210ENST00000596121 ERCC6L2Q5T890 1561 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms