RNA–Protein interactions for RNA: ENST00000595560.1

ZNF550-207, Transcript of zinc finger protein 550, humanhuman

TSL 1 (best)

Gene ZNF550, Length 565 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF550-207ENST00000595560 NISCHQ9Y2I1 1504 aa38.84■■■■□ 3.81
ZNF550-207ENST00000595560 CCDC180Q9P1Z9 1646 aa34.7■■■■□ 3.14
ZNF550-207ENST00000595560 ABCC9O60706 1549 aa34.01■■■■□ 3.04
ZNF550-207ENST00000595560 RB1CC1Q8TDY2 1594 aa32.7■■■□□ 2.83
ZNF550-207ENST00000595560 NACADO15069 1562 aa32.62■■■□□ 2.81
ZNF550-207ENST00000595560 MYO15BQ96JP2 1530 aa32.39■■■□□ 2.78
ZNF550-207ENST00000595560 DCAF8L2P0C7V8 631 aa32.37■■■□□ 2.77
ZNF550-207ENST00000595560 ZCCHC6Q5VYS8 1495 aaKnown RBP32.33■■■□□ 2.77
ZNF550-207ENST00000595560 DCAF1Q9Y4B6 1507 aa32.17■■■□□ 2.74
ZNF550-207ENST00000595560 UNC13AQ9UPW8 1703 aa32.01■■■□□ 2.72
ZNF550-207ENST00000595560 BICRAQ9NZM4 1560 aa31.72■■■□□ 2.67
ZNF550-207ENST00000595560 PABPN1Q86U42 306 aaKnown RBP eCLIP31.69■■■□□ 2.66
ZNF550-207ENST00000595560 SCRIBQ14160 1630 aa31.57■■■□□ 2.64
ZNF550-207ENST00000595560 SHROOM4Q9ULL8 1493 aa31.41■■■□□ 2.62
ZNF550-207ENST00000595560 DNAJC5BQ9UF47 199 aa31.35■■■□□ 2.61
ZNF550-207ENST00000595560 EIF4G1Q04637 1599 aaKnown RBP30.89■■■□□ 2.54
ZNF550-207ENST00000595560 CC2D2AQ9P2K1 1620 aa30.81■■■□□ 2.52
ZNF550-207ENST00000595560 CECR2Q9BXF3 1484 aa30.6■■■□□ 2.49
ZNF550-207ENST00000595560 SMARCA4P51532 1647 aa30.21■■■□□ 2.43
ZNF550-207ENST00000595560 BAZ1AQ9NRL2 1556 aaPredicted RBP30.13■■■□□ 2.41
ZNF550-207ENST00000595560 NCAPD3P42695 1498 aa30.07■■■□□ 2.4
ZNF550-207ENST00000595560 ATAD2BQ9ULI0 1458 aa30.05■■■□□ 2.4
ZNF550-207ENST00000595560 SMARCA2P51531 1590 aa30.04■■■□□ 2.4
ZNF550-207ENST00000595560 HMGXB3Q12766 1538 aa29.96■■■□□ 2.39
ZNF550-207ENST00000595560 PEG3Q9GZU2 1588 aa29.94■■■□□ 2.38
ZNF550-207ENST00000595560 MROH2BQ7Z745 1585 aa29.91■■■□□ 2.38
ZNF550-207ENST00000595560 BAZ1BQ9UIG0 1483 aaKnown RBP29.8■■■□□ 2.36
ZNF550-207ENST00000595560 WIZO95785 1651 aa29.6■■■□□ 2.33
ZNF550-207ENST00000595560 RSF1Q96T23 1441 aaPredicted RBP29.48■■■□□ 2.31
ZNF550-207ENST00000595560 NESP48681 1621 aa29.38■■■□□ 2.29
ZNF550-207ENST00000595560 ERCC6Q03468 1493 aa29.35■■■□□ 2.29
ZNF550-207ENST00000595560 LAMC3Q9Y6N6 1575 aa29.35■■■□□ 2.29
ZNF550-207ENST00000595560 TOP2AP11388 1531 aaKnown RBP29.3■■■□□ 2.28
ZNF550-207ENST00000595560 CADPSQ9ULU8 1353 aa29.15■■■□□ 2.26
ZNF550-207ENST00000595560 CUX2O14529 1486 aa29.15■■■□□ 2.26
ZNF550-207ENST00000595560 PDS5BQ9NTI5 1447 aa29.11■■■□□ 2.25
ZNF550-207ENST00000595560 KIF21AQ7Z4S6 1674 aa29.1■■■□□ 2.25
ZNF550-207ENST00000595560 THOC2Q8NI27 1593 aaKnown RBP29.05■■■□□ 2.24
ZNF550-207ENST00000595560 CFTRP13569 1480 aa28.97■■■□□ 2.23
ZNF550-207ENST00000595560 CCDC88BA6NC98 1476 aa28.9■■■□□ 2.22
ZNF550-207ENST00000595560 PRDM2Q13029 1718 aa28.85■■■□□ 2.21
ZNF550-207ENST00000595560 FANCD2Q9BXW9 1451 aa28.84■■■□□ 2.21
ZNF550-207ENST00000595560 MRC2Q9UBG0 1479 aa28.84■■■□□ 2.21
ZNF550-207ENST00000595560 CEP164Q9UPV0 1460 aa28.84■■■□□ 2.21
ZNF550-207ENST00000595560 WDR62O43379 1518 aa28.78■■■□□ 2.2
ZNF550-207ENST00000595560 URB2Q14146 1524 aaKnown RBP28.58■■■□□ 2.17
ZNF550-207ENST00000595560 SUPT5HO00267 1087 aaKnown RBP28.49■■■□□ 2.15
ZNF550-207ENST00000595560 DNAJC5Q9H3Z4 198 aa28.41■■■□□ 2.14
ZNF550-207ENST00000595560 TOPBP1Q92547 1522 aa28.37■■■□□ 2.13
ZNF550-207ENST00000595560 ABCC8Q09428 1581 aa28.37■■■□□ 2.13
ZNF550-207ENST00000595560 DNMBPQ6XZF7 1577 aa28.34■■■□□ 2.13
ZNF550-207ENST00000595560 IFT140Q96RY7 1462 aa28.24■■■□□ 2.11
ZNF550-207ENST00000595560 POLA1P09884 1462 aaPredicted RBP28.12■■■□□ 2.09
ZNF550-207ENST00000595560 ZNF608Q9ULD9 1512 aaPredicted RBP28.11■■■□□ 2.09
ZNF550-207ENST00000595560 TARBP1Q13395 1621 aaKnown RBP28.1■■■□□ 2.09
ZNF550-207ENST00000595560 CUX1P39880 1505 aa28.08■■■□□ 2.09
ZNF550-207ENST00000595560 EIF4G3O43432 1585 aaKnown RBP28.05■■■□□ 2.08
ZNF550-207ENST00000595560 FGD5Q6ZNL6 1462 aa28.02■■■□□ 2.08
ZNF550-207ENST00000595560 SOGA1O94964 1423 aa27.96■■■□□ 2.07
ZNF550-207ENST00000595560 RAD54L2Q9Y4B4 1467 aa27.95■■■□□ 2.07
ZNF550-207ENST00000595560 WDR97A6NE52 1622 aa27.92■■■□□ 2.06
ZNF550-207ENST00000595560 AQRO60306 1485 aaKnown RBP eCLIP27.9■■■□□ 2.06
ZNF550-207ENST00000595560 BIVM-ERCC5R4GMW8 1640 aa27.84■■■□□ 2.05
ZNF550-207ENST00000595560 TOP2BQ02880 1626 aa27.82■■■□□ 2.04
ZNF550-207ENST00000595560 OSCARQ8IYS5 282 aa27.82■■■□□ 2.04
ZNF550-207ENST00000595560 TDRD9Q8NDG6 1382 aaKnown RBP27.81■■■□□ 2.04
ZNF550-207ENST00000595560 WRNQ14191 1432 aaPredicted RBP eCLIP27.81■■■□□ 2.04
ZNF550-207ENST00000595560 SYNJ1O43426 1573 aa27.78■■■□□ 2.04
ZNF550-207ENST00000595560 ABCA10Q8WWZ4 1543 aa27.75■■■□□ 2.03
ZNF550-207ENST00000595560 CHD1O14646 1710 aa27.74■■■□□ 2.03
ZNF550-207ENST00000595560 ABCA5Q8WWZ7 1642 aa27.7■■■□□ 2.02
ZNF550-207ENST00000595560 GRIN2BQ13224 1484 aa27.69■■■□□ 2.02
ZNF550-207ENST00000595560 PBRM1Q86U86 1689 aa27.68■■■□□ 2.02
ZNF550-207ENST00000595560 SNAPC4Q5SXM2 1469 aa27.67■■■□□ 2.02
ZNF550-207ENST00000595560 MAGI1Q96QZ7 1491 aaPredicted RBP27.66■■■□□ 2.02
ZNF550-207ENST00000595560 GAPVD1Q14C86 1478 aa27.65■■■□□ 2.02
ZNF550-207ENST00000595560 FBLN2P98095 1184 aa27.55■■■□□ 2
ZNF550-207ENST00000595560 SYNJ2O15056 1496 aa27.54■■■□□ 2
ZNF550-207ENST00000595560 RIMBP3CA6NJZ7 1639 aa27.49■■□□□ 1.99
ZNF550-207ENST00000595560 RIMBP3BA6NNM3 1639 aa27.49■■□□□ 1.99
ZNF550-207ENST00000595560 RIMBP3Q9UFD9 1639 aa27.49■■□□□ 1.99
ZNF550-207ENST00000595560 CHMP7Q8WUX9 453 aaPredicted RBP27.47■■□□□ 1.99
ZNF550-207ENST00000595560 ARHGEF11O15085 1522 aa27.44■■□□□ 1.98
ZNF550-207ENST00000595560 ADAMTS12P58397 1594 aa27.43■■□□□ 1.98
ZNF550-207ENST00000595560 ERICH3Q5RHP9 1530 aa27.42■■□□□ 1.98
ZNF550-207ENST00000595560 CLASP1Q7Z460 1538 aa27.42■■□□□ 1.98
ZNF550-207ENST00000595560 GRIN2AQ12879 1464 aa27.34■■□□□ 1.97
ZNF550-207ENST00000595560 TRIM41Q8WV44 630 aa27.34■■□□□ 1.97
ZNF550-207ENST00000595560 FHAD1B1AJZ9 1412 aa27.33■■□□□ 1.97
ZNF550-207ENST00000595560 KIF27Q86VH2 1401 aa27.24■■□□□ 1.95
ZNF550-207ENST00000595560 CEP170Q5SW79 1584 aa27.23■■□□□ 1.95
ZNF550-207ENST00000595560 NUP160Q12769 1436 aa27.23■■□□□ 1.95
ZNF550-207ENST00000595560 ARAP1Q96P48 1450 aa27.2■■□□□ 1.95
ZNF550-207ENST00000595560 CUL7Q14999 1698 aa27.17■■□□□ 1.94
ZNF550-207ENST00000595560 IGF1RP08069 1367 aa27.13■■□□□ 1.93
ZNF550-207ENST00000595560 CYB5RLQ6IPT4 315 aa27.1■■□□□ 1.93
ZNF550-207ENST00000595560 SHROOM2Q13796 1616 aa27.09■■□□□ 1.93
ZNF550-207ENST00000595560 RUSC2Q8N2Y8 1516 aa27.04■■□□□ 1.92
ZNF550-207ENST00000595560 ERCC6L2Q5T890 1561 aa27■■□□□ 1.91
ZNF550-207ENST00000595560 CARMIL1Q5VZK9 1371 aa26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms