RNA–Protein interactions for RNA: ENST00000595452.1

TMEM38A-202, Transcript of transmembrane protein 38A, humanhuman

TSL 2

Gene TMEM38A, Length 798 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM38A-202ENST00000595452 NISCHQ9Y2I1 1504 aa33.18■■■□□ 2.9
TMEM38A-202ENST00000595452 CCDC180Q9P1Z9 1646 aa29.67■■■□□ 2.34
TMEM38A-202ENST00000595452 ABCC9O60706 1549 aa28.96■■■□□ 2.23
TMEM38A-202ENST00000595452 RB1CC1Q8TDY2 1594 aa27.95■■■□□ 2.07
TMEM38A-202ENST00000595452 NACADO15069 1562 aa27.87■■■□□ 2.05
TMEM38A-202ENST00000595452 DCAF8L2P0C7V8 631 aa27.73■■■□□ 2.03
TMEM38A-202ENST00000595452 MYO15BQ96JP2 1530 aa27.67■■■□□ 2.02
TMEM38A-202ENST00000595452 ZCCHC6Q5VYS8 1495 aaKnown RBP27.63■■■□□ 2.01
TMEM38A-202ENST00000595452 DCAF1Q9Y4B6 1507 aa27.5■■□□□ 1.99
TMEM38A-202ENST00000595452 UNC13AQ9UPW8 1703 aa27.27■■□□□ 1.96
TMEM38A-202ENST00000595452 SCRIBQ14160 1630 aa26.98■■□□□ 1.91
TMEM38A-202ENST00000595452 PABPN1Q86U42 306 aaKnown RBP eCLIP26.97■■□□□ 1.91
TMEM38A-202ENST00000595452 BICRAQ9NZM4 1560 aa26.96■■□□□ 1.91
TMEM38A-202ENST00000595452 SHROOM4Q9ULL8 1493 aa26.86■■□□□ 1.89
TMEM38A-202ENST00000595452 DNAJC5BQ9UF47 199 aa26.46■■□□□ 1.83
TMEM38A-202ENST00000595452 EIF4G1Q04637 1599 aaKnown RBP26.33■■□□□ 1.81
TMEM38A-202ENST00000595452 CC2D2AQ9P2K1 1620 aa26.24■■□□□ 1.79
TMEM38A-202ENST00000595452 CECR2Q9BXF3 1484 aa26.07■■□□□ 1.76
TMEM38A-202ENST00000595452 SMARCA4P51532 1647 aa25.81■■□□□ 1.72
TMEM38A-202ENST00000595452 BAZ1AQ9NRL2 1556 aaPredicted RBP25.8■■□□□ 1.72
TMEM38A-202ENST00000595452 SMARCA2P51531 1590 aa25.7■■□□□ 1.71
TMEM38A-202ENST00000595452 NCAPD3P42695 1498 aa25.63■■□□□ 1.69
TMEM38A-202ENST00000595452 ATAD2BQ9ULI0 1458 aa25.62■■□□□ 1.69
TMEM38A-202ENST00000595452 HMGXB3Q12766 1538 aa25.58■■□□□ 1.69
TMEM38A-202ENST00000595452 PEG3Q9GZU2 1588 aa25.55■■□□□ 1.68
TMEM38A-202ENST00000595452 MROH2BQ7Z745 1585 aa25.52■■□□□ 1.68
TMEM38A-202ENST00000595452 BAZ1BQ9UIG0 1483 aaKnown RBP25.49■■□□□ 1.67
TMEM38A-202ENST00000595452 WIZO95785 1651 aa25.28■■□□□ 1.64
TMEM38A-202ENST00000595452 RSF1Q96T23 1441 aaPredicted RBP25.19■■□□□ 1.62
TMEM38A-202ENST00000595452 ERCC6Q03468 1493 aa25.09■■□□□ 1.61
TMEM38A-202ENST00000595452 LAMC3Q9Y6N6 1575 aa25.08■■□□□ 1.61
TMEM38A-202ENST00000595452 TOP2AP11388 1531 aaKnown RBP25.06■■□□□ 1.6
TMEM38A-202ENST00000595452 NESP48681 1621 aa24.99■■□□□ 1.59
TMEM38A-202ENST00000595452 PDS5BQ9NTI5 1447 aa24.89■■□□□ 1.58
TMEM38A-202ENST00000595452 CADPSQ9ULU8 1353 aa24.89■■□□□ 1.57
TMEM38A-202ENST00000595452 CUX2O14529 1486 aa24.83■■□□□ 1.57
TMEM38A-202ENST00000595452 KIF21AQ7Z4S6 1674 aa24.81■■□□□ 1.56
TMEM38A-202ENST00000595452 THOC2Q8NI27 1593 aaKnown RBP24.72■■□□□ 1.55
TMEM38A-202ENST00000595452 CFTRP13569 1480 aa24.72■■□□□ 1.55
TMEM38A-202ENST00000595452 PRDM2Q13029 1718 aa24.7■■□□□ 1.54
TMEM38A-202ENST00000595452 CCDC88BA6NC98 1476 aa24.68■■□□□ 1.54
TMEM38A-202ENST00000595452 CEP164Q9UPV0 1460 aa24.66■■□□□ 1.54
TMEM38A-202ENST00000595452 FANCD2Q9BXW9 1451 aa24.64■■□□□ 1.53
TMEM38A-202ENST00000595452 MRC2Q9UBG0 1479 aa24.61■■□□□ 1.53
TMEM38A-202ENST00000595452 WDR62O43379 1518 aa24.53■■□□□ 1.52
TMEM38A-202ENST00000595452 SUPT5HO00267 1087 aaKnown RBP24.49■■□□□ 1.51
TMEM38A-202ENST00000595452 URB2Q14146 1524 aaKnown RBP24.34■■□□□ 1.49
TMEM38A-202ENST00000595452 ABCC8Q09428 1581 aa24.31■■□□□ 1.48
TMEM38A-202ENST00000595452 DNMBPQ6XZF7 1577 aa24.24■■□□□ 1.47
TMEM38A-202ENST00000595452 TOPBP1Q92547 1522 aa24.21■■□□□ 1.47
TMEM38A-202ENST00000595452 IFT140Q96RY7 1462 aa24.13■■□□□ 1.45
TMEM38A-202ENST00000595452 DNAJC5Q9H3Z4 198 aa24.04■■□□□ 1.44
TMEM38A-202ENST00000595452 POLA1P09884 1462 aaPredicted RBP24■■□□□ 1.43
TMEM38A-202ENST00000595452 CUX1P39880 1505 aa23.96■■□□□ 1.43
TMEM38A-202ENST00000595452 TARBP1Q13395 1621 aaKnown RBP23.95■■□□□ 1.43
TMEM38A-202ENST00000595452 EIF4G3O43432 1585 aaKnown RBP23.94■■□□□ 1.42
TMEM38A-202ENST00000595452 FGD5Q6ZNL6 1462 aa23.94■■□□□ 1.42
TMEM38A-202ENST00000595452 ZNF608Q9ULD9 1512 aaPredicted RBP23.92■■□□□ 1.42
TMEM38A-202ENST00000595452 WDR97A6NE52 1622 aa23.91■■□□□ 1.42
TMEM38A-202ENST00000595452 SOGA1O94964 1423 aa23.9■■□□□ 1.42
TMEM38A-202ENST00000595452 RAD54L2Q9Y4B4 1467 aa23.83■■□□□ 1.41
TMEM38A-202ENST00000595452 BIVM-ERCC5R4GMW8 1640 aa23.83■■□□□ 1.41
TMEM38A-202ENST00000595452 WRNQ14191 1432 aaPredicted RBP eCLIP23.83■■□□□ 1.4
TMEM38A-202ENST00000595452 TOP2BQ02880 1626 aa23.81■■□□□ 1.4
TMEM38A-202ENST00000595452 AQRO60306 1485 aaKnown RBP eCLIP23.77■■□□□ 1.4
TMEM38A-202ENST00000595452 SYNJ1O43426 1573 aa23.74■■□□□ 1.39
TMEM38A-202ENST00000595452 OSCARQ8IYS5 282 aa23.73■■□□□ 1.39
TMEM38A-202ENST00000595452 TDRD9Q8NDG6 1382 aaKnown RBP23.72■■□□□ 1.39
TMEM38A-202ENST00000595452 ABCA10Q8WWZ4 1543 aa23.71■■□□□ 1.39
TMEM38A-202ENST00000595452 PBRM1Q86U86 1689 aa23.68■■□□□ 1.38
TMEM38A-202ENST00000595452 GRIN2BQ13224 1484 aa23.68■■□□□ 1.38
TMEM38A-202ENST00000595452 CHD1O14646 1710 aa23.67■■□□□ 1.38
TMEM38A-202ENST00000595452 MAGI1Q96QZ7 1491 aaPredicted RBP23.65■■□□□ 1.38
TMEM38A-202ENST00000595452 ABCA5Q8WWZ7 1642 aa23.65■■□□□ 1.38
TMEM38A-202ENST00000595452 GAPVD1Q14C86 1478 aa23.64■■□□□ 1.38
TMEM38A-202ENST00000595452 SNAPC4Q5SXM2 1469 aa23.62■■□□□ 1.37
TMEM38A-202ENST00000595452 FBLN2P98095 1184 aa23.58■■□□□ 1.37
TMEM38A-202ENST00000595452 SYNJ2O15056 1496 aa23.53■■□□□ 1.36
TMEM38A-202ENST00000595452 CHMP7Q8WUX9 453 aaPredicted RBP23.52■■□□□ 1.36
TMEM38A-202ENST00000595452 ERICH3Q5RHP9 1530 aa23.47■■□□□ 1.35
TMEM38A-202ENST00000595452 ADAMTS12P58397 1594 aa23.44■■□□□ 1.34
TMEM38A-202ENST00000595452 RIMBP3CA6NJZ7 1639 aa23.38■■□□□ 1.33
TMEM38A-202ENST00000595452 RIMBP3BA6NNM3 1639 aa23.38■■□□□ 1.33
TMEM38A-202ENST00000595452 RIMBP3Q9UFD9 1639 aa23.38■■□□□ 1.33
TMEM38A-202ENST00000595452 FHAD1B1AJZ9 1412 aa23.38■■□□□ 1.33
TMEM38A-202ENST00000595452 KIF27Q86VH2 1401 aa23.37■■□□□ 1.33
TMEM38A-202ENST00000595452 GRIN2AQ12879 1464 aa23.36■■□□□ 1.33
TMEM38A-202ENST00000595452 ARHGEF11O15085 1522 aa23.35■■□□□ 1.33
TMEM38A-202ENST00000595452 CLASP1Q7Z460 1538 aa23.35■■□□□ 1.33
TMEM38A-202ENST00000595452 CUL7Q14999 1698 aa23.31■■□□□ 1.32
TMEM38A-202ENST00000595452 TRIM41Q8WV44 630 aa23.25■■□□□ 1.31
TMEM38A-202ENST00000595452 NUP160Q12769 1436 aa23.22■■□□□ 1.31
TMEM38A-202ENST00000595452 CEP170Q5SW79 1584 aa23.22■■□□□ 1.31
TMEM38A-202ENST00000595452 IGF1RP08069 1367 aa23.16■■□□□ 1.3
TMEM38A-202ENST00000595452 ARAP1Q96P48 1450 aa23.12■■□□□ 1.29
TMEM38A-202ENST00000595452 RUSC2Q8N2Y8 1516 aa23.1■■□□□ 1.29
TMEM38A-202ENST00000595452 SHROOM2Q13796 1616 aa23.1■■□□□ 1.29
TMEM38A-202ENST00000595452 CYB5RLQ6IPT4 315 aa23.09■■□□□ 1.29
TMEM38A-202ENST00000595452 CARMIL1Q5VZK9 1371 aa23.08■■□□□ 1.29
TMEM38A-202ENST00000595452 KIAA0586Q9BVV6 1533 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms