RNA–Protein interactions for RNA: ENST00000594213.5

GTF2F1-203, Transcript of general transcription factor IIF subunit 1, humanhuman

TSL 3

Gene GTF2F1, Length 1,002 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-203ENST00000594213 NISCHQ9Y2I1 1504 aa40.06■■■■■ 4
GTF2F1-203ENST00000594213 ABCC9O60706 1549 aa35.99■■■■□ 3.35
GTF2F1-203ENST00000594213 CCDC180Q9P1Z9 1646 aa35.83■■■■□ 3.33
GTF2F1-203ENST00000594213 RB1CC1Q8TDY2 1594 aa34.19■■■■□ 3.06
GTF2F1-203ENST00000594213 NACADO15069 1562 aa33.98■■■■□ 3.03
GTF2F1-203ENST00000594213 DNAJC5BQ9UF47 199 aa33.97■■■■□ 3.03
GTF2F1-203ENST00000594213 DCAF8L2P0C7V8 631 aa33.81■■■■□ 3
GTF2F1-203ENST00000594213 PABPN1Q86U42 306 aaKnown RBP eCLIP33.57■■■□□ 2.96
GTF2F1-203ENST00000594213 MYO15BQ96JP2 1530 aa33.57■■■□□ 2.96
GTF2F1-203ENST00000594213 UNC13AQ9UPW8 1703 aa33.29■■■□□ 2.92
GTF2F1-203ENST00000594213 BICRAQ9NZM4 1560 aa33.26■■■□□ 2.92
GTF2F1-203ENST00000594213 ZCCHC6Q5VYS8 1495 aaKnown RBP33.18■■■□□ 2.9
GTF2F1-203ENST00000594213 DCAF1Q9Y4B6 1507 aa33.11■■■□□ 2.89
GTF2F1-203ENST00000594213 SHROOM4Q9ULL8 1493 aa32.8■■■□□ 2.84
GTF2F1-203ENST00000594213 SCRIBQ14160 1630 aa32.66■■■□□ 2.82
GTF2F1-203ENST00000594213 CC2D2AQ9P2K1 1620 aa32.47■■■□□ 2.79
GTF2F1-203ENST00000594213 CECR2Q9BXF3 1484 aa32.44■■■□□ 2.78
GTF2F1-203ENST00000594213 EIF4G1Q04637 1599 aaKnown RBP32.41■■■□□ 2.78
GTF2F1-203ENST00000594213 NCAPD3P42695 1498 aa31.46■■■□□ 2.63
GTF2F1-203ENST00000594213 ATAD2BQ9ULI0 1458 aa31.33■■■□□ 2.61
GTF2F1-203ENST00000594213 DNAJC5Q9H3Z4 198 aa31.21■■■□□ 2.59
GTF2F1-203ENST00000594213 SMARCA4P51532 1647 aa31.19■■■□□ 2.58
GTF2F1-203ENST00000594213 SMARCA2P51531 1590 aa31.17■■■□□ 2.58
GTF2F1-203ENST00000594213 HMGXB3Q12766 1538 aa31.14■■■□□ 2.57
GTF2F1-203ENST00000594213 CUX2O14529 1486 aa31.06■■■□□ 2.56
GTF2F1-203ENST00000594213 BAZ1AQ9NRL2 1556 aaPredicted RBP31.05■■■□□ 2.56
GTF2F1-203ENST00000594213 ERCC6Q03468 1493 aa31.03■■■□□ 2.56
GTF2F1-203ENST00000594213 BAZ1BQ9UIG0 1483 aaKnown RBP30.95■■■□□ 2.55
GTF2F1-203ENST00000594213 PEG3Q9GZU2 1588 aa30.95■■■□□ 2.54
GTF2F1-203ENST00000594213 NESP48681 1621 aa30.92■■■□□ 2.54
GTF2F1-203ENST00000594213 MROH2BQ7Z745 1585 aa30.87■■■□□ 2.53
GTF2F1-203ENST00000594213 LAMC3Q9Y6N6 1575 aa30.64■■■□□ 2.5
GTF2F1-203ENST00000594213 THOC2Q8NI27 1593 aaKnown RBP30.55■■■□□ 2.48
GTF2F1-203ENST00000594213 PDS5BQ9NTI5 1447 aa30.54■■■□□ 2.48
GTF2F1-203ENST00000594213 CADPSQ9ULU8 1353 aa30.5■■■□□ 2.47
GTF2F1-203ENST00000594213 WIZO95785 1651 aa30.39■■■□□ 2.46
GTF2F1-203ENST00000594213 KIF21AQ7Z4S6 1674 aa30.37■■■□□ 2.45
GTF2F1-203ENST00000594213 RSF1Q96T23 1441 aaPredicted RBP30.26■■■□□ 2.43
GTF2F1-203ENST00000594213 MRC2Q9UBG0 1479 aa30.25■■■□□ 2.43
GTF2F1-203ENST00000594213 WDR62O43379 1518 aa30.17■■■□□ 2.42
GTF2F1-203ENST00000594213 CFTRP13569 1480 aa30.12■■■□□ 2.41
GTF2F1-203ENST00000594213 FANCD2Q9BXW9 1451 aa30.09■■■□□ 2.41
GTF2F1-203ENST00000594213 CEP164Q9UPV0 1460 aa30.09■■■□□ 2.41
GTF2F1-203ENST00000594213 TOP2AP11388 1531 aaKnown RBP30.06■■■□□ 2.4
GTF2F1-203ENST00000594213 URB2Q14146 1524 aaKnown RBP29.86■■■□□ 2.37
GTF2F1-203ENST00000594213 CCDC88BA6NC98 1476 aa29.78■■■□□ 2.36
GTF2F1-203ENST00000594213 TRIM41Q8WV44 630 aa29.7■■■□□ 2.35
GTF2F1-203ENST00000594213 OSCARQ8IYS5 282 aa29.69■■■□□ 2.34
GTF2F1-203ENST00000594213 PRDM2Q13029 1718 aa29.54■■■□□ 2.32
GTF2F1-203ENST00000594213 IFT140Q96RY7 1462 aa29.54■■■□□ 2.32
GTF2F1-203ENST00000594213 TOPBP1Q92547 1522 aa29.51■■■□□ 2.32
GTF2F1-203ENST00000594213 ZNF608Q9ULD9 1512 aaPredicted RBP29.51■■■□□ 2.32
GTF2F1-203ENST00000594213 ABCC8Q09428 1581 aa29.44■■■□□ 2.3
GTF2F1-203ENST00000594213 DNMBPQ6XZF7 1577 aa29.35■■■□□ 2.29
GTF2F1-203ENST00000594213 AQRO60306 1485 aaKnown RBP eCLIP29.24■■■□□ 2.279e-7■□□□□ 8.2
GTF2F1-203ENST00000594213 TARBP1Q13395 1621 aaKnown RBP29.23■■■□□ 2.27
GTF2F1-203ENST00000594213 POLA1P09884 1462 aaPredicted RBP29.23■■■□□ 2.27
GTF2F1-203ENST00000594213 EIF4G3O43432 1585 aaKnown RBP29.22■■■□□ 2.27
GTF2F1-203ENST00000594213 RIMBP3CA6NJZ7 1639 aa29.18■■■□□ 2.26
GTF2F1-203ENST00000594213 RIMBP3BA6NNM3 1639 aa29.18■■■□□ 2.26
GTF2F1-203ENST00000594213 RIMBP3Q9UFD9 1639 aa29.18■■■□□ 2.26
GTF2F1-203ENST00000594213 ARHGEF11O15085 1522 aa29.14■■■□□ 2.25
GTF2F1-203ENST00000594213 RAD54L2Q9Y4B4 1467 aa29.12■■■□□ 2.25
GTF2F1-203ENST00000594213 SOGA1O94964 1423 aa29.11■■■□□ 2.25
GTF2F1-203ENST00000594213 TDRD9Q8NDG6 1382 aaKnown RBP29.07■■■□□ 2.24
GTF2F1-203ENST00000594213 FBLN2P98095 1184 aa29.02■■■□□ 2.24
GTF2F1-203ENST00000594213 FGD5Q6ZNL6 1462 aa29■■■□□ 2.23
GTF2F1-203ENST00000594213 CUX1P39880 1505 aa28.99■■■□□ 2.23
GTF2F1-203ENST00000594213 CYB5RLQ6IPT4 315 aa28.98■■■□□ 2.23
GTF2F1-203ENST00000594213 CHD1O14646 1710 aa28.95■■■□□ 2.23
GTF2F1-203ENST00000594213 WDR97A6NE52 1622 aa28.9■■■□□ 2.22
GTF2F1-203ENST00000594213 SNAPC4Q5SXM2 1469 aa28.9■■■□□ 2.22
GTF2F1-203ENST00000594213 ARAP1Q96P48 1450 aa28.88■■■□□ 2.21
GTF2F1-203ENST00000594213 CHMP7Q8WUX9 453 aaPredicted RBP28.84■■■□□ 2.21
GTF2F1-203ENST00000594213 GRIN2BQ13224 1484 aa28.84■■■□□ 2.21
GTF2F1-203ENST00000594213 MAGI1Q96QZ7 1491 aaPredicted RBP28.83■■■□□ 2.21
GTF2F1-203ENST00000594213 SUPT5HO00267 1087 aaKnown RBP28.82■■■□□ 2.2
GTF2F1-203ENST00000594213 CLASP1Q7Z460 1538 aa28.77■■■□□ 2.2
GTF2F1-203ENST00000594213 SYNJ2O15056 1496 aa28.74■■■□□ 2.19
GTF2F1-203ENST00000594213 GAPVD1Q14C86 1478 aa28.72■■■□□ 2.19
GTF2F1-203ENST00000594213 ABCA10Q8WWZ4 1543 aa28.71■■■□□ 2.19
GTF2F1-203ENST00000594213 SYNJ1O43426 1573 aa28.68■■■□□ 2.18
GTF2F1-203ENST00000594213 TRHP20396 242 aaPredicted RBP28.61■■■□□ 2.17
GTF2F1-203ENST00000594213 ABCA5Q8WWZ7 1642 aa28.59■■■□□ 2.17
GTF2F1-203ENST00000594213 WRNQ14191 1432 aaPredicted RBP eCLIP28.58■■■□□ 2.17
GTF2F1-203ENST00000594213 PBRM1Q86U86 1689 aa28.54■■■□□ 2.16
GTF2F1-203ENST00000594213 TOP2BQ02880 1626 aa28.47■■■□□ 2.15
GTF2F1-203ENST00000594213 GRIN2AQ12879 1464 aa28.45■■■□□ 2.14
GTF2F1-203ENST00000594213 BIVM-ERCC5R4GMW8 1640 aa28.43■■■□□ 2.14
GTF2F1-203ENST00000594213 NUP160Q12769 1436 aa28.42■■■□□ 2.14
GTF2F1-203ENST00000594213 FHAD1B1AJZ9 1412 aa28.38■■■□□ 2.13
GTF2F1-203ENST00000594213 ADAMTS12P58397 1594 aa28.37■■■□□ 2.13
GTF2F1-203ENST00000594213 CEP170Q5SW79 1584 aa28.33■■■□□ 2.12
GTF2F1-203ENST00000594213 ERCC6L2Q5T890 1561 aa28.32■■■□□ 2.12
GTF2F1-203ENST00000594213 ERICH3Q5RHP9 1530 aa28.31■■■□□ 2.12
GTF2F1-203ENST00000594213 SHROOM2Q13796 1616 aa28.2■■■□□ 2.1
GTF2F1-203ENST00000594213 JPH4Q96JJ6 628 aa28.16■■■□□ 2.1
GTF2F1-203ENST00000594213 PRG4Q92954 1404 aaPredicted RBP28.11■■■□□ 2.09
GTF2F1-203ENST00000594213 IGF1RP08069 1367 aa28.06■■■□□ 2.08
GTF2F1-203ENST00000594213 RUSC2Q8N2Y8 1516 aa27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms