RNA–Protein interactions for RNA: ENST00000594116.1

LTBP4-209, Transcript of latent transforming growth factor beta binding protein 4, humanhuman

TSL 3

Gene LTBP4, Length 420 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP4-209ENST00000594116 NISCHQ9Y2I1 1504 aa41.82■■■■■ 4.29
LTBP4-209ENST00000594116 CCDC180Q9P1Z9 1646 aa37.54■■■■□ 3.6
LTBP4-209ENST00000594116 ABCC9O60706 1549 aa37.26■■■■□ 3.56
LTBP4-209ENST00000594116 RB1CC1Q8TDY2 1594 aa35.62■■■■□ 3.29
LTBP4-209ENST00000594116 NACADO15069 1562 aa35.42■■■■□ 3.26
LTBP4-209ENST00000594116 DCAF8L2P0C7V8 631 aa35.06■■■■□ 3.2
LTBP4-209ENST00000594116 MYO15BQ96JP2 1530 aa35.02■■■■□ 3.2
LTBP4-209ENST00000594116 UNC13AQ9UPW8 1703 aa34.84■■■■□ 3.17
LTBP4-209ENST00000594116 DNAJC5BQ9UF47 199 aa34.77■■■■□ 3.16
LTBP4-209ENST00000594116 ZCCHC6Q5VYS8 1495 aaKnown RBP34.71■■■■□ 3.15
LTBP4-209ENST00000594116 PABPN1Q86U42 306 aaKnown RBP eCLIP34.65■■■■□ 3.14
LTBP4-209ENST00000594116 DCAF1Q9Y4B6 1507 aa34.61■■■■□ 3.13
LTBP4-209ENST00000594116 BICRAQ9NZM4 1560 aa34.57■■■■□ 3.12
LTBP4-209ENST00000594116 SHROOM4Q9ULL8 1493 aa34.2■■■■□ 3.06
LTBP4-209ENST00000594116 SCRIBQ14160 1630 aa34.12■■■■□ 3.05
LTBP4-209ENST00000594116 CC2D2AQ9P2K1 1620 aa33.72■■■□□ 2.99
LTBP4-209ENST00000594116 EIF4G1Q04637 1599 aaKnown RBP33.7■■■□□ 2.99
LTBP4-209ENST00000594116 CECR2Q9BXF3 1484 aa33.57■■■□□ 2.97
LTBP4-209ENST00000594116 NCAPD3P42695 1498 aa32.67■■■□□ 2.82
LTBP4-209ENST00000594116 SMARCA4P51532 1647 aa32.61■■■□□ 2.81
LTBP4-209ENST00000594116 ATAD2BQ9ULI0 1458 aa32.57■■■□□ 2.8
LTBP4-209ENST00000594116 SMARCA2P51531 1590 aa32.53■■■□□ 2.8
LTBP4-209ENST00000594116 HMGXB3Q12766 1538 aa32.48■■■□□ 2.79
LTBP4-209ENST00000594116 BAZ1AQ9NRL2 1556 aaPredicted RBP32.47■■■□□ 2.79
LTBP4-209ENST00000594116 PEG3Q9GZU2 1588 aa32.33■■■□□ 2.77
LTBP4-209ENST00000594116 BAZ1BQ9UIG0 1483 aaKnown RBP32.27■■■□□ 2.76
LTBP4-209ENST00000594116 MROH2BQ7Z745 1585 aa32.2■■■□□ 2.75
LTBP4-209ENST00000594116 ERCC6Q03468 1493 aa32.18■■■□□ 2.74
LTBP4-209ENST00000594116 CUX2O14529 1486 aa32.13■■■□□ 2.73
LTBP4-209ENST00000594116 NESP48681 1621 aa32.06■■■□□ 2.72
LTBP4-209ENST00000594116 LAMC3Q9Y6N6 1575 aa31.94■■■□□ 2.7
LTBP4-209ENST00000594116 DNAJC5Q9H3Z4 198 aa31.86■■■□□ 2.69
LTBP4-209ENST00000594116 WIZO95785 1651 aa31.83■■■□□ 2.69
LTBP4-209ENST00000594116 THOC2Q8NI27 1593 aaKnown RBP31.78■■■□□ 2.68
LTBP4-209ENST00000594116 KIF21AQ7Z4S6 1674 aa31.71■■■□□ 2.67
LTBP4-209ENST00000594116 PDS5BQ9NTI5 1447 aa31.7■■■□□ 2.67
LTBP4-209ENST00000594116 CADPSQ9ULU8 1353 aa31.65■■■□□ 2.66
LTBP4-209ENST00000594116 RSF1Q96T23 1441 aaPredicted RBP31.58■■■□□ 2.65
LTBP4-209ENST00000594116 TOP2AP11388 1531 aaKnown RBP31.47■■■□□ 2.63
LTBP4-209ENST00000594116 MRC2Q9UBG0 1479 aa31.43■■■□□ 2.62
LTBP4-209ENST00000594116 WDR62O43379 1518 aa31.38■■■□□ 2.61
LTBP4-209ENST00000594116 CFTRP13569 1480 aa31.35■■■□□ 2.61
LTBP4-209ENST00000594116 CEP164Q9UPV0 1460 aa31.33■■■□□ 2.61
LTBP4-209ENST00000594116 FANCD2Q9BXW9 1451 aa31.3■■■□□ 2.6
LTBP4-209ENST00000594116 PRDM2Q13029 1718 aa31.13■■■□□ 2.57
LTBP4-209ENST00000594116 CCDC88BA6NC98 1476 aa31.06■■■□□ 2.56
LTBP4-209ENST00000594116 URB2Q14146 1524 aaKnown RBP31.04■■■□□ 2.56
LTBP4-209ENST00000594116 TOPBP1Q92547 1522 aa30.73■■■□□ 2.51
LTBP4-209ENST00000594116 IFT140Q96RY7 1462 aa30.71■■■□□ 2.51
LTBP4-209ENST00000594116 ABCC8Q09428 1581 aa30.71■■■□□ 2.51
LTBP4-209ENST00000594116 DNMBPQ6XZF7 1577 aa30.66■■■□□ 2.5
LTBP4-209ENST00000594116 ZNF608Q9ULD9 1512 aaPredicted RBP30.61■■■□□ 2.49
LTBP4-209ENST00000594116 OSCARQ8IYS5 282 aa30.6■■■□□ 2.49
LTBP4-209ENST00000594116 EIF4G3O43432 1585 aaKnown RBP30.5■■■□□ 2.47
LTBP4-209ENST00000594116 TARBP1Q13395 1621 aaKnown RBP30.48■■■□□ 2.47
LTBP4-209ENST00000594116 TRIM41Q8WV44 630 aa30.45■■■□□ 2.47
LTBP4-209ENST00000594116 POLA1P09884 1462 aaPredicted RBP30.43■■■□□ 2.46
LTBP4-209ENST00000594116 AQRO60306 1485 aaKnown RBP eCLIP30.33■■■□□ 2.455e-6■■□□□ 14.3
LTBP4-209ENST00000594116 SUPT5HO00267 1087 aaKnown RBP30.3■■■□□ 2.44
LTBP4-209ENST00000594116 RAD54L2Q9Y4B4 1467 aa30.27■■■□□ 2.44
LTBP4-209ENST00000594116 SOGA1O94964 1423 aa30.26■■■□□ 2.43
LTBP4-209ENST00000594116 CUX1P39880 1505 aa30.26■■■□□ 2.43
LTBP4-209ENST00000594116 RIMBP3CA6NJZ7 1639 aa30.25■■■□□ 2.43
LTBP4-209ENST00000594116 RIMBP3BA6NNM3 1639 aa30.25■■■□□ 2.43
LTBP4-209ENST00000594116 RIMBP3Q9UFD9 1639 aa30.25■■■□□ 2.43
LTBP4-209ENST00000594116 CHD1O14646 1710 aa30.25■■■□□ 2.43
LTBP4-209ENST00000594116 FGD5Q6ZNL6 1462 aa30.25■■■□□ 2.43
LTBP4-209ENST00000594116 WDR97A6NE52 1622 aa30.24■■■□□ 2.43
LTBP4-209ENST00000594116 ARHGEF11O15085 1522 aa30.17■■■□□ 2.42
LTBP4-209ENST00000594116 TDRD9Q8NDG6 1382 aaKnown RBP30.15■■■□□ 2.42
LTBP4-209ENST00000594116 SNAPC4Q5SXM2 1469 aa30.06■■■□□ 2.4
LTBP4-209ENST00000594116 FBLN2P98095 1184 aa30.04■■■□□ 2.4
LTBP4-209ENST00000594116 MAGI1Q96QZ7 1491 aaPredicted RBP30.03■■■□□ 2.4
LTBP4-209ENST00000594116 GRIN2BQ13224 1484 aa30.01■■■□□ 2.4
LTBP4-209ENST00000594116 PBRM1Q86U86 1689 aa29.95■■■□□ 2.39
LTBP4-209ENST00000594116 ABCA10Q8WWZ4 1543 aa29.95■■■□□ 2.38
LTBP4-209ENST00000594116 ABCA5Q8WWZ7 1642 aa29.92■■■□□ 2.38
LTBP4-209ENST00000594116 GAPVD1Q14C86 1478 aa29.92■■■□□ 2.38
LTBP4-209ENST00000594116 CLASP1Q7Z460 1538 aa29.91■■■□□ 2.38
LTBP4-209ENST00000594116 SYNJ2O15056 1496 aa29.91■■■□□ 2.38
LTBP4-209ENST00000594116 SYNJ1O43426 1573 aa29.9■■■□□ 2.38
LTBP4-209ENST00000594116 CHMP7Q8WUX9 453 aaPredicted RBP29.88■■■□□ 2.37
LTBP4-209ENST00000594116 ARAP1Q96P48 1450 aa29.87■■■□□ 2.37
LTBP4-209ENST00000594116 BIVM-ERCC5R4GMW8 1640 aa29.86■■■□□ 2.37
LTBP4-209ENST00000594116 TOP2BQ02880 1626 aa29.85■■■□□ 2.37
LTBP4-209ENST00000594116 CYB5RLQ6IPT4 315 aa29.84■■■□□ 2.37
LTBP4-209ENST00000594116 WRNQ14191 1432 aaPredicted RBP eCLIP29.82■■■□□ 2.36
LTBP4-209ENST00000594116 ADAMTS12P58397 1594 aa29.66■■■□□ 2.34
LTBP4-209ENST00000594116 GRIN2AQ12879 1464 aa29.63■■■□□ 2.33
LTBP4-209ENST00000594116 ERICH3Q5RHP9 1530 aa29.59■■■□□ 2.33
LTBP4-209ENST00000594116 FHAD1B1AJZ9 1412 aa29.55■■■□□ 2.32
LTBP4-209ENST00000594116 NUP160Q12769 1436 aa29.54■■■□□ 2.32
LTBP4-209ENST00000594116 CEP170Q5SW79 1584 aa29.53■■■□□ 2.32
LTBP4-209ENST00000594116 TRHP20396 242 aaPredicted RBP29.44■■■□□ 2.3
LTBP4-209ENST00000594116 SHROOM2Q13796 1616 aa29.43■■■□□ 2.3
LTBP4-209ENST00000594116 ERCC6L2Q5T890 1561 aa29.4■■■□□ 2.3
LTBP4-209ENST00000594116 RUSC2Q8N2Y8 1516 aa29.25■■■□□ 2.27
LTBP4-209ENST00000594116 KIF27Q86VH2 1401 aa29.22■■■□□ 2.27
LTBP4-209ENST00000594116 CUL7Q14999 1698 aa29.21■■■□□ 2.27
LTBP4-209ENST00000594116 PRG4Q92954 1404 aaPredicted RBP29.2■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 127.4 ms