RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 NISCHQ9Y2I1 1504 aa45.4■■■■■ 4.86
SHKBP1-202ENST00000593764 CCDC180Q9P1Z9 1646 aa40.38■■■■■ 4.05
SHKBP1-202ENST00000593764 ABCC9O60706 1549 aa39.83■■■■□ 3.97
SHKBP1-202ENST00000593764 RB1CC1Q8TDY2 1594 aa38.14■■■■□ 3.7
SHKBP1-202ENST00000593764 NACADO15069 1562 aa38.06■■■■□ 3.68
SHKBP1-202ENST00000593764 DCAF8L2P0C7V8 631 aa38.05■■■■□ 3.68
SHKBP1-202ENST00000593764 MYO15BQ96JP2 1530 aa37.78■■■■□ 3.64
SHKBP1-202ENST00000593764 ZCCHC6Q5VYS8 1495 aaKnown RBP37.75■■■■□ 3.63
SHKBP1-202ENST00000593764 DCAF1Q9Y4B6 1507 aa37.53■■■■□ 3.6
SHKBP1-202ENST00000593764 UNC13AQ9UPW8 1703 aa37.29■■■■□ 3.56
SHKBP1-202ENST00000593764 PABPN1Q86U42 306 aaKnown RBP eCLIP37.24■■■■□ 3.55
SHKBP1-202ENST00000593764 BICRAQ9NZM4 1560 aa37.08■■■■□ 3.53
SHKBP1-202ENST00000593764 DNAJC5BQ9UF47 199 aa36.91■■■■□ 3.5
SHKBP1-202ENST00000593764 SCRIBQ14160 1630 aa36.86■■■■□ 3.49
SHKBP1-202ENST00000593764 SHROOM4Q9ULL8 1493 aa36.58■■■■□ 3.45
SHKBP1-202ENST00000593764 EIF4G1Q04637 1599 aaKnown RBP36.08■■■■□ 3.37
SHKBP1-202ENST00000593764 CC2D2AQ9P2K1 1620 aa36■■■■□ 3.35
SHKBP1-202ENST00000593764 CECR2Q9BXF3 1484 aa35.81■■■■□ 3.32
SHKBP1-202ENST00000593764 SMARCA4P51532 1647 aa35.24■■■■□ 3.23
SHKBP1-202ENST00000593764 NCAPD3P42695 1498 aa35.18■■■■□ 3.22
SHKBP1-202ENST00000593764 ATAD2BQ9ULI0 1458 aa35.16■■■■□ 3.22
SHKBP1-202ENST00000593764 BAZ1AQ9NRL2 1556 aaPredicted RBP35.16■■■■□ 3.22
SHKBP1-202ENST00000593764 SMARCA2P51531 1590 aa35.04■■■■□ 3.2
SHKBP1-202ENST00000593764 MROH2BQ7Z745 1585 aa35■■■■□ 3.19
SHKBP1-202ENST00000593764 HMGXB3Q12766 1538 aa34.93■■■■□ 3.18
SHKBP1-202ENST00000593764 PEG3Q9GZU2 1588 aa34.91■■■■□ 3.18
SHKBP1-202ENST00000593764 BAZ1BQ9UIG0 1483 aaKnown RBP34.81■■■■□ 3.16
SHKBP1-202ENST00000593764 WIZO95785 1651 aa34.57■■■■□ 3.13
SHKBP1-202ENST00000593764 RSF1Q96T23 1441 aaPredicted RBP34.53■■■■□ 3.12
SHKBP1-202ENST00000593764 NESP48681 1621 aa34.42■■■■□ 3.1
SHKBP1-202ENST00000593764 ERCC6Q03468 1493 aa34.3■■■■□ 3.08
SHKBP1-202ENST00000593764 LAMC3Q9Y6N6 1575 aa34.23■■■■□ 3.07
SHKBP1-202ENST00000593764 TOP2AP11388 1531 aaKnown RBP34.17■■■■□ 3.06
SHKBP1-202ENST00000593764 CADPSQ9ULU8 1353 aa34.15■■■■□ 3.06
SHKBP1-202ENST00000593764 CUX2O14529 1486 aa34.04■■■■□ 3.04
SHKBP1-202ENST00000593764 PDS5BQ9NTI5 1447 aa34.04■■■■□ 3.04
SHKBP1-202ENST00000593764 KIF21AQ7Z4S6 1674 aa33.93■■■■□ 3.02
SHKBP1-202ENST00000593764 THOC2Q8NI27 1593 aaKnown RBP33.89■■■■□ 3.02
SHKBP1-202ENST00000593764 CFTRP13569 1480 aa33.88■■■■□ 3.01
SHKBP1-202ENST00000593764 CCDC88BA6NC98 1476 aa33.83■■■■□ 3.01
SHKBP1-202ENST00000593764 FANCD2Q9BXW9 1451 aa33.73■■■□□ 2.99
SHKBP1-202ENST00000593764 MRC2Q9UBG0 1479 aa33.69■■■□□ 2.98
SHKBP1-202ENST00000593764 CEP164Q9UPV0 1460 aa33.68■■■□□ 2.98
SHKBP1-202ENST00000593764 WDR62O43379 1518 aa33.58■■■□□ 2.97
SHKBP1-202ENST00000593764 PRDM2Q13029 1718 aa33.49■■■□□ 2.95
SHKBP1-202ENST00000593764 SUPT5HO00267 1087 aaKnown RBP33.46■■■□□ 2.95
SHKBP1-202ENST00000593764 URB2Q14146 1524 aaKnown RBP33.43■■■□□ 2.94
SHKBP1-202ENST00000593764 DNAJC5Q9H3Z4 198 aa33.39■■■□□ 2.94
SHKBP1-202ENST00000593764 TOPBP1Q92547 1522 aa33.16■■■□□ 2.9
SHKBP1-202ENST00000593764 ABCC8Q09428 1581 aa33.11■■■□□ 2.89
SHKBP1-202ENST00000593764 DNMBPQ6XZF7 1577 aa33.06■■■□□ 2.88
SHKBP1-202ENST00000593764 IFT140Q96RY7 1462 aa32.99■■■□□ 2.87
SHKBP1-202ENST00000593764 ZNF608Q9ULD9 1512 aaPredicted RBP32.92■■■□□ 2.86
SHKBP1-202ENST00000593764 POLA1P09884 1462 aaPredicted RBP32.87■■■□□ 2.85
SHKBP1-202ENST00000593764 CUX1P39880 1505 aa32.84■■■□□ 2.85
SHKBP1-202ENST00000593764 TARBP1Q13395 1621 aaKnown RBP32.81■■■□□ 2.84
SHKBP1-202ENST00000593764 RAD54L2Q9Y4B4 1467 aa32.75■■■□□ 2.83
SHKBP1-202ENST00000593764 SOGA1O94964 1423 aa32.75■■■□□ 2.83
SHKBP1-202ENST00000593764 FGD5Q6ZNL6 1462 aa32.74■■■□□ 2.83
SHKBP1-202ENST00000593764 AQRO60306 1485 aaKnown RBP eCLIP32.71■■■□□ 2.83
SHKBP1-202ENST00000593764 EIF4G3O43432 1585 aaKnown RBP32.7■■■□□ 2.82
SHKBP1-202ENST00000593764 OSCARQ8IYS5 282 aa32.65■■■□□ 2.82
SHKBP1-202ENST00000593764 TDRD9Q8NDG6 1382 aaKnown RBP32.61■■■□□ 2.81
SHKBP1-202ENST00000593764 WRNQ14191 1432 aaPredicted RBP eCLIP32.51■■■□□ 2.8
SHKBP1-202ENST00000593764 WDR97A6NE52 1622 aa32.48■■■□□ 2.79
SHKBP1-202ENST00000593764 TOP2BQ02880 1626 aa32.45■■■□□ 2.79
SHKBP1-202ENST00000593764 SYNJ1O43426 1573 aa32.45■■■□□ 2.78
SHKBP1-202ENST00000593764 BIVM-ERCC5R4GMW8 1640 aa32.43■■■□□ 2.78
SHKBP1-202ENST00000593764 ABCA10Q8WWZ4 1543 aa32.42■■■□□ 2.78
SHKBP1-202ENST00000593764 GRIN2BQ13224 1484 aa32.36■■■□□ 2.77
SHKBP1-202ENST00000593764 SNAPC4Q5SXM2 1469 aa32.35■■■□□ 2.77
SHKBP1-202ENST00000593764 GAPVD1Q14C86 1478 aa32.35■■■□□ 2.77
SHKBP1-202ENST00000593764 FBLN2P98095 1184 aa32.34■■■□□ 2.77
SHKBP1-202ENST00000593764 CHD1O14646 1710 aa32.32■■■□□ 2.76
SHKBP1-202ENST00000593764 MAGI1Q96QZ7 1491 aaPredicted RBP32.29■■■□□ 2.76
SHKBP1-202ENST00000593764 ABCA5Q8WWZ7 1642 aa32.28■■■□□ 2.76
SHKBP1-202ENST00000593764 CHMP7Q8WUX9 453 aaPredicted RBP32.22■■■□□ 2.75
SHKBP1-202ENST00000593764 PBRM1Q86U86 1689 aa32.21■■■□□ 2.75
SHKBP1-202ENST00000593764 SYNJ2O15056 1496 aa32.18■■■□□ 2.74
SHKBP1-202ENST00000593764 TRIM41Q8WV44 630 aa32.13■■■□□ 2.73
SHKBP1-202ENST00000593764 RIMBP3CA6NJZ7 1639 aa32.1■■■□□ 2.73
SHKBP1-202ENST00000593764 RIMBP3BA6NNM3 1639 aa32.1■■■□□ 2.73
SHKBP1-202ENST00000593764 RIMBP3Q9UFD9 1639 aa32.1■■■□□ 2.73
SHKBP1-202ENST00000593764 ARHGEF11O15085 1522 aa32.08■■■□□ 2.73
SHKBP1-202ENST00000593764 CLASP1Q7Z460 1538 aa32.01■■■□□ 2.72
SHKBP1-202ENST00000593764 ERICH3Q5RHP9 1530 aa32■■■□□ 2.71
SHKBP1-202ENST00000593764 ADAMTS12P58397 1594 aa31.98■■■□□ 2.71
SHKBP1-202ENST00000593764 FHAD1B1AJZ9 1412 aa31.96■■■□□ 2.71
SHKBP1-202ENST00000593764 GRIN2AQ12879 1464 aa31.95■■■□□ 2.7
SHKBP1-202ENST00000593764 CYB5RLQ6IPT4 315 aa31.85■■■□□ 2.69
SHKBP1-202ENST00000593764 NUP160Q12769 1436 aa31.84■■■□□ 2.69
SHKBP1-202ENST00000593764 KIF27Q86VH2 1401 aa31.84■■■□□ 2.69
SHKBP1-202ENST00000593764 ARAP1Q96P48 1450 aa31.83■■■□□ 2.69
SHKBP1-202ENST00000593764 IGF1RP08069 1367 aa31.82■■■□□ 2.69
SHKBP1-202ENST00000593764 CEP170Q5SW79 1584 aa31.81■■■□□ 2.68
SHKBP1-202ENST00000593764 CUL7Q14999 1698 aa31.62■■■□□ 2.65
SHKBP1-202ENST00000593764 SHROOM2Q13796 1616 aa31.6■■■□□ 2.65
SHKBP1-202ENST00000593764 CARMIL1Q5VZK9 1371 aa31.59■■■□□ 2.65
SHKBP1-202ENST00000593764 ERCC6L2Q5T890 1561 aa31.59■■■□□ 2.65
SHKBP1-202ENST00000593764 RUSC2Q8N2Y8 1516 aa31.55■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms