RNA–Protein interactions for RNA: ENST00000593597.1

USE1-203, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 587 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-203ENST00000593597 NISCHQ9Y2I1 1504 aa27.17■■□□□ 1.94
USE1-203ENST00000593597 CCDC180Q9P1Z9 1646 aa24.45■■□□□ 1.5
USE1-203ENST00000593597 ABCC9O60706 1549 aa24.39■■□□□ 1.49
USE1-203ENST00000593597 RB1CC1Q8TDY2 1594 aa23.19■■□□□ 1.3
USE1-203ENST00000593597 NACADO15069 1562 aa23.03■■□□□ 1.28
USE1-203ENST00000593597 DNAJC5BQ9UF47 199 aa22.91■■□□□ 1.26
USE1-203ENST00000593597 UNC13AQ9UPW8 1703 aa22.88■■□□□ 1.25
USE1-203ENST00000593597 DCAF8L2P0C7V8 631 aa22.73■■□□□ 1.23
USE1-203ENST00000593597 MYO15BQ96JP2 1530 aa22.72■■□□□ 1.23
USE1-203ENST00000593597 BICRAQ9NZM4 1560 aa22.65■■□□□ 1.22
USE1-203ENST00000593597 PABPN1Q86U42 306 aaKnown RBP eCLIP22.64■■□□□ 1.21
USE1-203ENST00000593597 ZCCHC6Q5VYS8 1495 aaKnown RBP22.55■■□□□ 1.2
USE1-203ENST00000593597 DCAF1Q9Y4B6 1507 aa22.44■■□□□ 1.18
USE1-203ENST00000593597 SCRIBQ14160 1630 aa22.27■■□□□ 1.16
USE1-203ENST00000593597 SHROOM4Q9ULL8 1493 aa22.2■■□□□ 1.14
USE1-203ENST00000593597 CC2D2AQ9P2K1 1620 aa22.08■■□□□ 1.13
USE1-203ENST00000593597 EIF4G1Q04637 1599 aaKnown RBP22.03■■□□□ 1.12
USE1-203ENST00000593597 CECR2Q9BXF3 1484 aa21.95■■□□□ 1.1
USE1-203ENST00000593597 SMARCA4P51532 1647 aa21.25■□□□□ 0.99
USE1-203ENST00000593597 NCAPD3P42695 1498 aa21.25■□□□□ 0.99
USE1-203ENST00000593597 ATAD2BQ9ULI0 1458 aa21.21■□□□□ 0.99
USE1-203ENST00000593597 HMGXB3Q12766 1538 aa21.14■□□□□ 0.98
USE1-203ENST00000593597 SMARCA2P51531 1590 aa21.12■□□□□ 0.97
USE1-203ENST00000593597 BAZ1AQ9NRL2 1556 aaPredicted RBP21.06■□□□□ 0.96
USE1-203ENST00000593597 PEG3Q9GZU2 1588 aa21.04■□□□□ 0.96
USE1-203ENST00000593597 NESP48681 1621 aa21■□□□□ 0.95
USE1-203ENST00000593597 CUX2O14529 1486 aa20.99■□□□□ 0.95
USE1-203ENST00000593597 MROH2BQ7Z745 1585 aa20.98■□□□□ 0.95
USE1-203ENST00000593597 ERCC6Q03468 1493 aa20.98■□□□□ 0.95
USE1-203ENST00000593597 BAZ1BQ9UIG0 1483 aaKnown RBP20.97■□□□□ 0.95
USE1-203ENST00000593597 DNAJC5Q9H3Z4 198 aa20.94■□□□□ 0.94
USE1-203ENST00000593597 THOC2Q8NI27 1593 aaKnown RBP20.85■□□□□ 0.93
USE1-203ENST00000593597 LAMC3Q9Y6N6 1575 aa20.8■□□□□ 0.92
USE1-203ENST00000593597 KIF21AQ7Z4S6 1674 aa20.8■□□□□ 0.92
USE1-203ENST00000593597 WIZO95785 1651 aa20.76■□□□□ 0.91
USE1-203ENST00000593597 PDS5BQ9NTI5 1447 aa20.58■□□□□ 0.88
USE1-203ENST00000593597 CADPSQ9ULU8 1353 aa20.57■□□□□ 0.88
USE1-203ENST00000593597 WDR62O43379 1518 aa20.49■□□□□ 0.87
USE1-203ENST00000593597 MRC2Q9UBG0 1479 aa20.49■□□□□ 0.87
USE1-203ENST00000593597 RSF1Q96T23 1441 aaPredicted RBP20.48■□□□□ 0.87
USE1-203ENST00000593597 TOP2AP11388 1531 aaKnown RBP20.44■□□□□ 0.86
USE1-203ENST00000593597 CFTRP13569 1480 aa20.38■□□□□ 0.85
USE1-203ENST00000593597 CEP164Q9UPV0 1460 aa20.38■□□□□ 0.85
USE1-203ENST00000593597 FANCD2Q9BXW9 1451 aa20.37■□□□□ 0.85
USE1-203ENST00000593597 PRDM2Q13029 1718 aa20.32■□□□□ 0.84
USE1-203ENST00000593597 URB2Q14146 1524 aaKnown RBP20.27■□□□□ 0.84
USE1-203ENST00000593597 CCDC88BA6NC98 1476 aa20.18■□□□□ 0.82
USE1-203ENST00000593597 TOPBP1Q92547 1522 aa20.02■□□□□ 0.8
USE1-203ENST00000593597 ZNF608Q9ULD9 1512 aaPredicted RBP20.02■□□□□ 0.8
USE1-203ENST00000593597 TRIM41Q8WV44 630 aa19.98■□□□□ 0.79
USE1-203ENST00000593597 IFT140Q96RY7 1462 aa19.97■□□□□ 0.79
USE1-203ENST00000593597 DNMBPQ6XZF7 1577 aa19.95■□□□□ 0.78
USE1-203ENST00000593597 EIF4G3O43432 1585 aaKnown RBP19.95■□□□□ 0.78
USE1-203ENST00000593597 TARBP1Q13395 1621 aaKnown RBP19.91■□□□□ 0.78
USE1-203ENST00000593597 OSCARQ8IYS5 282 aa19.91■□□□□ 0.78
USE1-203ENST00000593597 RIMBP3CA6NJZ7 1639 aa19.87■□□□□ 0.77
USE1-203ENST00000593597 RIMBP3BA6NNM3 1639 aa19.87■□□□□ 0.77
USE1-203ENST00000593597 RIMBP3Q9UFD9 1639 aa19.87■□□□□ 0.77
USE1-203ENST00000593597 ABCC8Q09428 1581 aa19.87■□□□□ 0.77
USE1-203ENST00000593597 CHD1O14646 1710 aa19.84■□□□□ 0.77
USE1-203ENST00000593597 POLA1P09884 1462 aaPredicted RBP19.82■□□□□ 0.76
USE1-203ENST00000593597 AQRO60306 1485 aaKnown RBP eCLIP19.78■□□□□ 0.769e-7■■■■■ 33.4
USE1-203ENST00000593597 ARHGEF11O15085 1522 aa19.76■□□□□ 0.75
USE1-203ENST00000593597 RAD54L2Q9Y4B4 1467 aa19.74■□□□□ 0.75
USE1-203ENST00000593597 CUX1P39880 1505 aa19.71■□□□□ 0.75
USE1-203ENST00000593597 FGD5Q6ZNL6 1462 aa19.68■□□□□ 0.74
USE1-203ENST00000593597 WDR97A6NE52 1622 aa19.68■□□□□ 0.74
USE1-203ENST00000593597 SOGA1O94964 1423 aa19.64■□□□□ 0.73
USE1-203ENST00000593597 TDRD9Q8NDG6 1382 aaKnown RBP19.63■□□□□ 0.73
USE1-203ENST00000593597 SNAPC4Q5SXM2 1469 aa19.6■□□□□ 0.73
USE1-203ENST00000593597 ARAP1Q96P48 1450 aa19.59■□□□□ 0.73
USE1-203ENST00000593597 CLASP1Q7Z460 1538 aa19.57■□□□□ 0.72
USE1-203ENST00000593597 PBRM1Q86U86 1689 aa19.57■□□□□ 0.72
USE1-203ENST00000593597 FBLN2P98095 1184 aa19.51■□□□□ 0.71
USE1-203ENST00000593597 MAGI1Q96QZ7 1491 aaPredicted RBP19.51■□□□□ 0.71
USE1-203ENST00000593597 ABCA5Q8WWZ7 1642 aa19.51■□□□□ 0.71
USE1-203ENST00000593597 GRIN2BQ13224 1484 aa19.5■□□□□ 0.71
USE1-203ENST00000593597 CYB5RLQ6IPT4 315 aa19.47■□□□□ 0.71
USE1-203ENST00000593597 SYNJ1O43426 1573 aa19.47■□□□□ 0.71
USE1-203ENST00000593597 ABCA10Q8WWZ4 1543 aa19.46■□□□□ 0.71
USE1-203ENST00000593597 SYNJ2O15056 1496 aa19.45■□□□□ 0.7
USE1-203ENST00000593597 GAPVD1Q14C86 1478 aa19.43■□□□□ 0.7
USE1-203ENST00000593597 SUPT5HO00267 1087 aaKnown RBP19.43■□□□□ 0.7
USE1-203ENST00000593597 BIVM-ERCC5R4GMW8 1640 aa19.43■□□□□ 0.7
USE1-203ENST00000593597 TOP2BQ02880 1626 aa19.37■□□□□ 0.69
USE1-203ENST00000593597 CHMP7Q8WUX9 453 aaPredicted RBP19.37■□□□□ 0.69
USE1-203ENST00000593597 ADAMTS12P58397 1594 aa19.35■□□□□ 0.69
USE1-203ENST00000593597 ERCC6L2Q5T890 1561 aa19.3■□□□□ 0.68
USE1-203ENST00000593597 CEP170Q5SW79 1584 aa19.29■□□□□ 0.68
USE1-203ENST00000593597 GRIN2AQ12879 1464 aa19.28■□□□□ 0.68
USE1-203ENST00000593597 WRNQ14191 1432 aaPredicted RBP eCLIP19.28■□□□□ 0.68
USE1-203ENST00000593597 NUP160Q12769 1436 aa19.23■□□□□ 0.67
USE1-203ENST00000593597 SHROOM2Q13796 1616 aa19.22■□□□□ 0.67
USE1-203ENST00000593597 TRHP20396 242 aaPredicted RBP19.21■□□□□ 0.67
USE1-203ENST00000593597 ERICH3Q5RHP9 1530 aa19.2■□□□□ 0.66
USE1-203ENST00000593597 FHAD1B1AJZ9 1412 aa19.17■□□□□ 0.66
USE1-203ENST00000593597 RUSC2Q8N2Y8 1516 aa19.09■□□□□ 0.65
USE1-203ENST00000593597 KIF13AQ9H1H9 1805 aa19.02■□□□□ 0.63
USE1-203ENST00000593597 PRG4Q92954 1404 aaPredicted RBP18.99■□□□□ 0.63
USE1-203ENST00000593597 CUL7Q14999 1698 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms