RNA–Protein interactions for RNA: ENST00000593425.5

LIG1-205, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-205ENST00000593425 NISCHQ9Y2I1 1504 aa41.34■■■■■ 4.21
LIG1-205ENST00000593425 ABCC9O60706 1549 aa37.2■■■■□ 3.55
LIG1-205ENST00000593425 CCDC180Q9P1Z9 1646 aa37.17■■■■□ 3.54
LIG1-205ENST00000593425 RB1CC1Q8TDY2 1594 aa35.37■■■■□ 3.25
LIG1-205ENST00000593425 NACADO15069 1562 aa35.1■■■■□ 3.21
LIG1-205ENST00000593425 DNAJC5BQ9UF47 199 aa34.94■■■■□ 3.18
LIG1-205ENST00000593425 DCAF8L2P0C7V8 631 aa34.83■■■■□ 3.17
LIG1-205ENST00000593425 UNC13AQ9UPW8 1703 aa34.68■■■■□ 3.14
LIG1-205ENST00000593425 MYO15BQ96JP2 1530 aa34.59■■■■□ 3.13
LIG1-205ENST00000593425 PABPN1Q86U42 306 aaKnown RBP eCLIP34.57■■■■□ 3.12
LIG1-205ENST00000593425 BICRAQ9NZM4 1560 aa34.4■■■■□ 3.1
LIG1-205ENST00000593425 ZCCHC6Q5VYS8 1495 aaKnown RBP34.27■■■■□ 3.08
LIG1-205ENST00000593425 DCAF1Q9Y4B6 1507 aa34.12■■■■□ 3.05
LIG1-205ENST00000593425 SCRIBQ14160 1630 aa33.87■■■■□ 3.01
LIG1-205ENST00000593425 SHROOM4Q9ULL8 1493 aa33.85■■■■□ 3.01
LIG1-205ENST00000593425 CC2D2AQ9P2K1 1620 aa33.63■■■□□ 2.97
LIG1-205ENST00000593425 EIF4G1Q04637 1599 aaKnown RBP33.53■■■□□ 2.96
LIG1-205ENST00000593425 CECR2Q9BXF3 1484 aa33.5■■■□□ 2.95
LIG1-205ENST00000593425 NCAPD3P42695 1498 aa32.39■■■□□ 2.78
LIG1-205ENST00000593425 ATAD2BQ9ULI0 1458 aa32.3■■■□□ 2.76
LIG1-205ENST00000593425 SMARCA4P51532 1647 aa32.29■■■□□ 2.76
LIG1-205ENST00000593425 SMARCA2P51531 1590 aa32.2■■■□□ 2.75
LIG1-205ENST00000593425 HMGXB3Q12766 1538 aa32.18■■■□□ 2.74
LIG1-205ENST00000593425 ERCC6Q03468 1493 aa32.09■■■□□ 2.73
LIG1-205ENST00000593425 BAZ1AQ9NRL2 1556 aaPredicted RBP32.08■■■□□ 2.73
LIG1-205ENST00000593425 DNAJC5Q9H3Z4 198 aa32.08■■■□□ 2.73
LIG1-205ENST00000593425 CUX2O14529 1486 aa32.06■■■□□ 2.72
LIG1-205ENST00000593425 BAZ1BQ9UIG0 1483 aaKnown RBP31.98■■■□□ 2.71
LIG1-205ENST00000593425 PEG3Q9GZU2 1588 aa31.97■■■□□ 2.71
LIG1-205ENST00000593425 NESP48681 1621 aa31.96■■■□□ 2.71
LIG1-205ENST00000593425 MROH2BQ7Z745 1585 aa31.87■■■□□ 2.69
LIG1-205ENST00000593425 LAMC3Q9Y6N6 1575 aa31.7■■■□□ 2.67
LIG1-205ENST00000593425 THOC2Q8NI27 1593 aaKnown RBP31.69■■■□□ 2.66
LIG1-205ENST00000593425 KIF21AQ7Z4S6 1674 aa31.59■■■□□ 2.65
LIG1-205ENST00000593425 WIZO95785 1651 aa31.51■■■□□ 2.64
LIG1-205ENST00000593425 PDS5BQ9NTI5 1447 aa31.46■■■□□ 2.63
LIG1-205ENST00000593425 CADPSQ9ULU8 1353 aa31.38■■■□□ 2.61
LIG1-205ENST00000593425 MRC2Q9UBG0 1479 aa31.24■■■□□ 2.59
LIG1-205ENST00000593425 WDR62O43379 1518 aa31.2■■■□□ 2.59
LIG1-205ENST00000593425 RSF1Q96T23 1441 aaPredicted RBP31.15■■■□□ 2.58
LIG1-205ENST00000593425 CEP164Q9UPV0 1460 aa31.1■■■□□ 2.57
LIG1-205ENST00000593425 TOP2AP11388 1531 aaKnown RBP31.08■■■□□ 2.57
LIG1-205ENST00000593425 FANCD2Q9BXW9 1451 aa31.06■■■□□ 2.56
LIG1-205ENST00000593425 CFTRP13569 1480 aa31.04■■■□□ 2.56
LIG1-205ENST00000593425 URB2Q14146 1524 aaKnown RBP30.84■■■□□ 2.53
LIG1-205ENST00000593425 PRDM2Q13029 1718 aa30.82■■■□□ 2.52
LIG1-205ENST00000593425 CCDC88BA6NC98 1476 aa30.7■■■□□ 2.51
LIG1-205ENST00000593425 TRIM41Q8WV44 630 aa30.66■■■□□ 2.5
LIG1-205ENST00000593425 OSCARQ8IYS5 282 aa30.51■■■□□ 2.47
LIG1-205ENST00000593425 TOPBP1Q92547 1522 aa30.48■■■□□ 2.47
LIG1-205ENST00000593425 IFT140Q96RY7 1462 aa30.47■■■□□ 2.47
LIG1-205ENST00000593425 ZNF608Q9ULD9 1512 aaPredicted RBP30.47■■■□□ 2.47
LIG1-205ENST00000593425 DNMBPQ6XZF7 1577 aa30.37■■■□□ 2.45
LIG1-205ENST00000593425 ABCC8Q09428 1581 aa30.35■■■□□ 2.45
LIG1-205ENST00000593425 EIF4G3O43432 1585 aaKnown RBP30.33■■■□□ 2.45
LIG1-205ENST00000593425 RIMBP3CA6NJZ7 1639 aa30.25■■■□□ 2.43
LIG1-205ENST00000593425 RIMBP3BA6NNM3 1639 aa30.25■■■□□ 2.43
LIG1-205ENST00000593425 RIMBP3Q9UFD9 1639 aa30.25■■■□□ 2.43
LIG1-205ENST00000593425 TARBP1Q13395 1621 aaKnown RBP30.25■■■□□ 2.43
LIG1-205ENST00000593425 POLA1P09884 1462 aaPredicted RBP30.17■■■□□ 2.42
LIG1-205ENST00000593425 AQRO60306 1485 aaKnown RBP eCLIP30.15■■■□□ 2.426e-7■■■■■ 32.8
LIG1-205ENST00000593425 CHD1O14646 1710 aa30.14■■■□□ 2.42
LIG1-205ENST00000593425 ARHGEF11O15085 1522 aa30.12■■■□□ 2.41
LIG1-205ENST00000593425 RAD54L2Q9Y4B4 1467 aa30.06■■■□□ 2.4
LIG1-205ENST00000593425 SOGA1O94964 1423 aa29.98■■■□□ 2.39
LIG1-205ENST00000593425 FGD5Q6ZNL6 1462 aa29.98■■■□□ 2.39
LIG1-205ENST00000593425 CUX1P39880 1505 aa29.95■■■□□ 2.38
LIG1-205ENST00000593425 TDRD9Q8NDG6 1382 aaKnown RBP29.94■■■□□ 2.38
LIG1-205ENST00000593425 FBLN2P98095 1184 aa29.91■■■□□ 2.38
LIG1-205ENST00000593425 WDR97A6NE52 1622 aa29.9■■■□□ 2.38
LIG1-205ENST00000593425 SNAPC4Q5SXM2 1469 aa29.87■■■□□ 2.37
LIG1-205ENST00000593425 ARAP1Q96P48 1450 aa29.84■■■□□ 2.37
LIG1-205ENST00000593425 CYB5RLQ6IPT4 315 aa29.83■■■□□ 2.37
LIG1-205ENST00000593425 MAGI1Q96QZ7 1491 aaPredicted RBP29.76■■■□□ 2.35
LIG1-205ENST00000593425 CLASP1Q7Z460 1538 aa29.76■■■□□ 2.35
LIG1-205ENST00000593425 GRIN2BQ13224 1484 aa29.74■■■□□ 2.35
LIG1-205ENST00000593425 PBRM1Q86U86 1689 aa29.72■■■□□ 2.35
LIG1-205ENST00000593425 SYNJ1O43426 1573 aa29.7■■■□□ 2.35
LIG1-205ENST00000593425 SUPT5HO00267 1087 aaKnown RBP29.67■■■□□ 2.34
LIG1-205ENST00000593425 CHMP7Q8WUX9 453 aaPredicted RBP29.67■■■□□ 2.34
LIG1-205ENST00000593425 SYNJ2O15056 1496 aa29.67■■■□□ 2.34
LIG1-205ENST00000593425 GAPVD1Q14C86 1478 aa29.64■■■□□ 2.34
LIG1-205ENST00000593425 ABCA5Q8WWZ7 1642 aa29.63■■■□□ 2.33
LIG1-205ENST00000593425 ABCA10Q8WWZ4 1543 aa29.61■■■□□ 2.33
LIG1-205ENST00000593425 TRHP20396 242 aaPredicted RBP29.51■■■□□ 2.31
LIG1-205ENST00000593425 BIVM-ERCC5R4GMW8 1640 aa29.48■■■□□ 2.31
LIG1-205ENST00000593425 TOP2BQ02880 1626 aa29.44■■■□□ 2.3
LIG1-205ENST00000593425 WRNQ14191 1432 aaPredicted RBP eCLIP29.43■■■□□ 2.3
LIG1-205ENST00000593425 ADAMTS12P58397 1594 aa29.41■■■□□ 2.3
LIG1-205ENST00000593425 GRIN2AQ12879 1464 aa29.38■■■□□ 2.29
LIG1-205ENST00000593425 CEP170Q5SW79 1584 aa29.33■■■□□ 2.29
LIG1-205ENST00000593425 ERCC6L2Q5T890 1561 aa29.31■■■□□ 2.28
LIG1-205ENST00000593425 NUP160Q12769 1436 aa29.28■■■□□ 2.28
LIG1-205ENST00000593425 FHAD1B1AJZ9 1412 aa29.25■■■□□ 2.27
LIG1-205ENST00000593425 ERICH3Q5RHP9 1530 aa29.24■■■□□ 2.27
LIG1-205ENST00000593425 SHROOM2Q13796 1616 aa29.21■■■□□ 2.27
LIG1-205ENST00000593425 RUSC2Q8N2Y8 1516 aa29■■■□□ 2.23
LIG1-205ENST00000593425 PRG4Q92954 1404 aaPredicted RBP28.99■■■□□ 2.23
LIG1-205ENST00000593425 JPH4Q96JJ6 628 aa28.92■■■□□ 2.22
LIG1-205ENST00000593425 KIF13AQ9H1H9 1805 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms