RNA–Protein interactions for RNA: ENST00000593251.5

RETREG3-212, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-212ENST00000593251 NISCHQ9Y2I1 1504 aa44.09■■■■■ 4.65
RETREG3-212ENST00000593251 ABCC9O60706 1549 aa39.79■■■■□ 3.96
RETREG3-212ENST00000593251 CCDC180Q9P1Z9 1646 aa39.65■■■■□ 3.94
RETREG3-212ENST00000593251 RB1CC1Q8TDY2 1594 aa37.78■■■■□ 3.64
RETREG3-212ENST00000593251 NACADO15069 1562 aa37.46■■■■□ 3.59
RETREG3-212ENST00000593251 DNAJC5BQ9UF47 199 aa37.42■■■■□ 3.58
RETREG3-212ENST00000593251 DCAF8L2P0C7V8 631 aa37.31■■■■□ 3.56
RETREG3-212ENST00000593251 UNC13AQ9UPW8 1703 aa37.08■■■■□ 3.53
RETREG3-212ENST00000593251 PABPN1Q86U42 306 aaKnown RBP eCLIP37.01■■■■□ 3.52
RETREG3-212ENST00000593251 MYO15BQ96JP2 1530 aa36.84■■■■□ 3.49
RETREG3-212ENST00000593251 BICRAQ9NZM4 1560 aa36.73■■■■□ 3.47
RETREG3-212ENST00000593251 ZCCHC6Q5VYS8 1495 aaKnown RBP36.51■■■■□ 3.44
RETREG3-212ENST00000593251 DCAF1Q9Y4B6 1507 aa36.35■■■■□ 3.41
RETREG3-212ENST00000593251 SCRIBQ14160 1630 aa36.18■■■■□ 3.38
RETREG3-212ENST00000593251 SHROOM4Q9ULL8 1493 aa36.08■■■■□ 3.37
RETREG3-212ENST00000593251 CC2D2AQ9P2K1 1620 aa35.95■■■■□ 3.35
RETREG3-212ENST00000593251 EIF4G1Q04637 1599 aaKnown RBP35.81■■■■□ 3.32
RETREG3-212ENST00000593251 CECR2Q9BXF3 1484 aa35.81■■■■□ 3.32
RETREG3-212ENST00000593251 NCAPD3P42695 1498 aa34.56■■■■□ 3.12
RETREG3-212ENST00000593251 ATAD2BQ9ULI0 1458 aa34.47■■■■□ 3.11
RETREG3-212ENST00000593251 SMARCA4P51532 1647 aa34.46■■■■□ 3.11
RETREG3-212ENST00000593251 DNAJC5Q9H3Z4 198 aa34.39■■■■□ 3.1
RETREG3-212ENST00000593251 SMARCA2P51531 1590 aa34.36■■■■□ 3.09
RETREG3-212ENST00000593251 ERCC6Q03468 1493 aa34.33■■■■□ 3.09
RETREG3-212ENST00000593251 HMGXB3Q12766 1538 aa34.32■■■■□ 3.08
RETREG3-212ENST00000593251 CUX2O14529 1486 aa34.27■■■■□ 3.08
RETREG3-212ENST00000593251 BAZ1AQ9NRL2 1556 aaPredicted RBP34.23■■■■□ 3.07
RETREG3-212ENST00000593251 NESP48681 1621 aa34.16■■■■□ 3.06
RETREG3-212ENST00000593251 BAZ1BQ9UIG0 1483 aaKnown RBP34.15■■■■□ 3.06
RETREG3-212ENST00000593251 PEG3Q9GZU2 1588 aa34.06■■■■□ 3.04
RETREG3-212ENST00000593251 MROH2BQ7Z745 1585 aa34.01■■■■□ 3.03
RETREG3-212ENST00000593251 LAMC3Q9Y6N6 1575 aa33.85■■■■□ 3.01
RETREG3-212ENST00000593251 THOC2Q8NI27 1593 aaKnown RBP33.84■■■■□ 3.01
RETREG3-212ENST00000593251 KIF21AQ7Z4S6 1674 aa33.78■■■■□ 3
RETREG3-212ENST00000593251 WIZO95785 1651 aa33.64■■■□□ 2.98
RETREG3-212ENST00000593251 PDS5BQ9NTI5 1447 aa33.61■■■□□ 2.97
RETREG3-212ENST00000593251 CADPSQ9ULU8 1353 aa33.51■■■□□ 2.96
RETREG3-212ENST00000593251 MRC2Q9UBG0 1479 aa33.37■■■□□ 2.93
RETREG3-212ENST00000593251 WDR62O43379 1518 aa33.3■■■□□ 2.92
RETREG3-212ENST00000593251 CEP164Q9UPV0 1460 aa33.22■■■□□ 2.91
RETREG3-212ENST00000593251 RSF1Q96T23 1441 aaPredicted RBP33.21■■■□□ 2.91
RETREG3-212ENST00000593251 FANCD2Q9BXW9 1451 aa33.17■■■□□ 2.9
RETREG3-212ENST00000593251 TOP2AP11388 1531 aaKnown RBP33.14■■■□□ 2.9
RETREG3-212ENST00000593251 CFTRP13569 1480 aa33.12■■■□□ 2.89
RETREG3-212ENST00000593251 URB2Q14146 1524 aaKnown RBP32.94■■■□□ 2.86
RETREG3-212ENST00000593251 TRIM41Q8WV44 630 aa32.92■■■□□ 2.86
RETREG3-212ENST00000593251 PRDM2Q13029 1718 aa32.91■■■□□ 2.86
RETREG3-212ENST00000593251 CCDC88BA6NC98 1476 aa32.77■■■□□ 2.84
RETREG3-212ENST00000593251 OSCARQ8IYS5 282 aa32.67■■■□□ 2.82
RETREG3-212ENST00000593251 ZNF608Q9ULD9 1512 aaPredicted RBP32.56■■■□□ 2.8
RETREG3-212ENST00000593251 TOPBP1Q92547 1522 aa32.54■■■□□ 2.8
RETREG3-212ENST00000593251 IFT140Q96RY7 1462 aa32.54■■■□□ 2.8
RETREG3-212ENST00000593251 DNMBPQ6XZF7 1577 aa32.41■■■□□ 2.78
RETREG3-212ENST00000593251 EIF4G3O43432 1585 aaKnown RBP32.4■■■□□ 2.78
RETREG3-212ENST00000593251 ABCC8Q09428 1581 aa32.4■■■□□ 2.78
RETREG3-212ENST00000593251 RIMBP3CA6NJZ7 1639 aa32.37■■■□□ 2.77
RETREG3-212ENST00000593251 RIMBP3BA6NNM3 1639 aa32.37■■■□□ 2.77
RETREG3-212ENST00000593251 RIMBP3Q9UFD9 1639 aa32.37■■■□□ 2.77
RETREG3-212ENST00000593251 TARBP1Q13395 1621 aaKnown RBP32.29■■■□□ 2.76
RETREG3-212ENST00000593251 CHD1O14646 1710 aa32.24■■■□□ 2.75
RETREG3-212ENST00000593251 AQRO60306 1485 aaKnown RBP eCLIP32.23■■■□□ 2.755e-6■■□□□ 14.3
RETREG3-212ENST00000593251 ARHGEF11O15085 1522 aa32.21■■■□□ 2.75
RETREG3-212ENST00000593251 POLA1P09884 1462 aaPredicted RBP32.2■■■□□ 2.75
RETREG3-212ENST00000593251 RAD54L2Q9Y4B4 1467 aa32.11■■■□□ 2.73
RETREG3-212ENST00000593251 FBLN2P98095 1184 aa32.05■■■□□ 2.72
RETREG3-212ENST00000593251 SOGA1O94964 1423 aa32.02■■■□□ 2.72
RETREG3-212ENST00000593251 TDRD9Q8NDG6 1382 aaKnown RBP32.01■■■□□ 2.71
RETREG3-212ENST00000593251 FGD5Q6ZNL6 1462 aa31.99■■■□□ 2.71
RETREG3-212ENST00000593251 CYB5RLQ6IPT4 315 aa31.97■■■□□ 2.71
RETREG3-212ENST00000593251 CUX1P39880 1505 aa31.95■■■□□ 2.71
RETREG3-212ENST00000593251 SNAPC4Q5SXM2 1469 aa31.91■■■□□ 2.7
RETREG3-212ENST00000593251 ARAP1Q96P48 1450 aa31.89■■■□□ 2.7
RETREG3-212ENST00000593251 WDR97A6NE52 1622 aa31.88■■■□□ 2.69
RETREG3-212ENST00000593251 MAGI1Q96QZ7 1491 aaPredicted RBP31.77■■■□□ 2.68
RETREG3-212ENST00000593251 CLASP1Q7Z460 1538 aa31.76■■■□□ 2.68
RETREG3-212ENST00000593251 GRIN2BQ13224 1484 aa31.76■■■□□ 2.67
RETREG3-212ENST00000593251 CHMP7Q8WUX9 453 aaPredicted RBP31.75■■■□□ 2.67
RETREG3-212ENST00000593251 PBRM1Q86U86 1689 aa31.75■■■□□ 2.67
RETREG3-212ENST00000593251 SYNJ1O43426 1573 aa31.73■■■□□ 2.67
RETREG3-212ENST00000593251 SUPT5HO00267 1087 aaKnown RBP31.71■■■□□ 2.67
RETREG3-212ENST00000593251 SYNJ2O15056 1496 aa31.67■■■□□ 2.66
RETREG3-212ENST00000593251 TRHP20396 242 aaPredicted RBP31.67■■■□□ 2.66
RETREG3-212ENST00000593251 GAPVD1Q14C86 1478 aa31.65■■■□□ 2.66
RETREG3-212ENST00000593251 ABCA5Q8WWZ7 1642 aa31.6■■■□□ 2.65
RETREG3-212ENST00000593251 ABCA10Q8WWZ4 1543 aa31.59■■■□□ 2.65
RETREG3-212ENST00000593251 BIVM-ERCC5R4GMW8 1640 aa31.43■■■□□ 2.62
RETREG3-212ENST00000593251 WRNQ14191 1432 aaPredicted RBP eCLIP31.41■■■□□ 2.62
RETREG3-212ENST00000593251 TOP2BQ02880 1626 aa31.4■■■□□ 2.62
RETREG3-212ENST00000593251 ADAMTS12P58397 1594 aa31.38■■■□□ 2.61
RETREG3-212ENST00000593251 GRIN2AQ12879 1464 aa31.37■■■□□ 2.61
RETREG3-212ENST00000593251 ERCC6L2Q5T890 1561 aa31.32■■■□□ 2.6
RETREG3-212ENST00000593251 CEP170Q5SW79 1584 aa31.31■■■□□ 2.6
RETREG3-212ENST00000593251 NUP160Q12769 1436 aa31.24■■■□□ 2.59
RETREG3-212ENST00000593251 FHAD1B1AJZ9 1412 aa31.22■■■□□ 2.59
RETREG3-212ENST00000593251 ERICH3Q5RHP9 1530 aa31.19■■■□□ 2.58
RETREG3-212ENST00000593251 SHROOM2Q13796 1616 aa31.17■■■□□ 2.58
RETREG3-212ENST00000593251 PRG4Q92954 1404 aaPredicted RBP30.98■■■□□ 2.55
RETREG3-212ENST00000593251 RUSC2Q8N2Y8 1516 aa30.94■■■□□ 2.54
RETREG3-212ENST00000593251 JPH4Q96JJ6 628 aa30.92■■■□□ 2.54
RETREG3-212ENST00000593251 KIF13AQ9H1H9 1805 aa30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms