RNA–Protein interactions for RNA: ENST00000593104.5

PRKCSH-220, Transcript of protein kinase C substrate 80K-H, humanhuman

TSL 4

Gene PRKCSH, Length 545 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCSH-220ENST00000593104 NISCHQ9Y2I1 1504 aa28.41■■■□□ 2.14
PRKCSH-220ENST00000593104 ABCC9O60706 1549 aa25.82■■□□□ 1.72
PRKCSH-220ENST00000593104 CCDC180Q9P1Z9 1646 aa25.5■■□□□ 1.67
PRKCSH-220ENST00000593104 DNAJC5BQ9UF47 199 aa24.4■■□□□ 1.5
PRKCSH-220ENST00000593104 RB1CC1Q8TDY2 1594 aa24.36■■□□□ 1.49
PRKCSH-220ENST00000593104 DCAF8L2P0C7V8 631 aa24.16■■□□□ 1.46
PRKCSH-220ENST00000593104 NACADO15069 1562 aa24.13■■□□□ 1.45
PRKCSH-220ENST00000593104 PABPN1Q86U42 306 aaKnown RBP eCLIP24.05■■□□□ 1.44
PRKCSH-220ENST00000593104 UNC13AQ9UPW8 1703 aa23.95■■□□□ 1.42
PRKCSH-220ENST00000593104 BICRAQ9NZM4 1560 aa23.76■■□□□ 1.39
PRKCSH-220ENST00000593104 MYO15BQ96JP2 1530 aa23.67■■□□□ 1.38
PRKCSH-220ENST00000593104 ZCCHC6Q5VYS8 1495 aaKnown RBP23.52■■□□□ 1.36
PRKCSH-220ENST00000593104 SCRIBQ14160 1630 aa23.39■■□□□ 1.33
PRKCSH-220ENST00000593104 DCAF1Q9Y4B6 1507 aa23.34■■□□□ 1.33
PRKCSH-220ENST00000593104 CC2D2AQ9P2K1 1620 aa23.26■■□□□ 1.31
PRKCSH-220ENST00000593104 CECR2Q9BXF3 1484 aa23.2■■□□□ 1.3
PRKCSH-220ENST00000593104 SHROOM4Q9ULL8 1493 aa23.19■■□□□ 1.3
PRKCSH-220ENST00000593104 EIF4G1Q04637 1599 aaKnown RBP23.15■■□□□ 1.3
PRKCSH-220ENST00000593104 DNAJC5Q9H3Z4 198 aa22.37■■□□□ 1.17
PRKCSH-220ENST00000593104 NCAPD3P42695 1498 aa22.29■■□□□ 1.16
PRKCSH-220ENST00000593104 ATAD2BQ9ULI0 1458 aa22.27■■□□□ 1.16
PRKCSH-220ENST00000593104 ERCC6Q03468 1493 aa22.22■■□□□ 1.15
PRKCSH-220ENST00000593104 SMARCA4P51532 1647 aa22.22■■□□□ 1.15
PRKCSH-220ENST00000593104 NESP48681 1621 aa22.17■■□□□ 1.14
PRKCSH-220ENST00000593104 CUX2O14529 1486 aa22.15■■□□□ 1.14
PRKCSH-220ENST00000593104 SMARCA2P51531 1590 aa22.12■■□□□ 1.13
PRKCSH-220ENST00000593104 HMGXB3Q12766 1538 aa22.11■■□□□ 1.13
PRKCSH-220ENST00000593104 BAZ1BQ9UIG0 1483 aaKnown RBP22.04■■□□□ 1.12
PRKCSH-220ENST00000593104 BAZ1AQ9NRL2 1556 aaPredicted RBP22.03■■□□□ 1.12
PRKCSH-220ENST00000593104 MROH2BQ7Z745 1585 aa21.97■■□□□ 1.11
PRKCSH-220ENST00000593104 PEG3Q9GZU2 1588 aa21.92■■□□□ 1.1
PRKCSH-220ENST00000593104 THOC2Q8NI27 1593 aaKnown RBP21.89■■□□□ 1.09
PRKCSH-220ENST00000593104 KIF21AQ7Z4S6 1674 aa21.84■■□□□ 1.09
PRKCSH-220ENST00000593104 LAMC3Q9Y6N6 1575 aa21.82■■□□□ 1.08
PRKCSH-220ENST00000593104 WIZO95785 1651 aa21.72■■□□□ 1.07
PRKCSH-220ENST00000593104 PDS5BQ9NTI5 1447 aa21.68■■□□□ 1.06
PRKCSH-220ENST00000593104 CADPSQ9ULU8 1353 aa21.63■■□□□ 1.05
PRKCSH-220ENST00000593104 MRC2Q9UBG0 1479 aa21.57■■□□□ 1.04
PRKCSH-220ENST00000593104 WDR62O43379 1518 aa21.51■■□□□ 1.03
PRKCSH-220ENST00000593104 TRIM41Q8WV44 630 aa21.46■■□□□ 1.03
PRKCSH-220ENST00000593104 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.02
PRKCSH-220ENST00000593104 FANCD2Q9BXW9 1451 aa21.43■■□□□ 1.02
PRKCSH-220ENST00000593104 RSF1Q96T23 1441 aaPredicted RBP21.42■■□□□ 1.02
PRKCSH-220ENST00000593104 CFTRP13569 1480 aa21.36■■□□□ 1.01
PRKCSH-220ENST00000593104 TOP2AP11388 1531 aaKnown RBP21.34■■□□□ 1.01
PRKCSH-220ENST00000593104 URB2Q14146 1524 aaKnown RBP21.31■■□□□ 1
PRKCSH-220ENST00000593104 OSCARQ8IYS5 282 aa21.15■□□□□ 0.98
PRKCSH-220ENST00000593104 PRDM2Q13029 1718 aa21.15■□□□□ 0.98
PRKCSH-220ENST00000593104 CCDC88BA6NC98 1476 aa21.13■□□□□ 0.97
PRKCSH-220ENST00000593104 ZNF608Q9ULD9 1512 aaPredicted RBP21.1■□□□□ 0.97
PRKCSH-220ENST00000593104 TOPBP1Q92547 1522 aa21.02■□□□□ 0.96
PRKCSH-220ENST00000593104 IFT140Q96RY7 1462 aa21■□□□□ 0.95
PRKCSH-220ENST00000593104 RIMBP3CA6NJZ7 1639 aa20.98■□□□□ 0.95
PRKCSH-220ENST00000593104 RIMBP3BA6NNM3 1639 aa20.98■□□□□ 0.95
PRKCSH-220ENST00000593104 RIMBP3Q9UFD9 1639 aa20.98■□□□□ 0.95
PRKCSH-220ENST00000593104 EIF4G3O43432 1585 aaKnown RBP20.93■□□□□ 0.94
PRKCSH-220ENST00000593104 DNMBPQ6XZF7 1577 aa20.89■□□□□ 0.94
PRKCSH-220ENST00000593104 ARHGEF11O15085 1522 aa20.88■□□□□ 0.93
PRKCSH-220ENST00000593104 AQRO60306 1485 aaKnown RBP eCLIP20.88■□□□□ 0.935e-6■■□□□ 11.4
PRKCSH-220ENST00000593104 CHD1O14646 1710 aa20.84■□□□□ 0.93
PRKCSH-220ENST00000593104 TARBP1Q13395 1621 aaKnown RBP20.84■□□□□ 0.93
PRKCSH-220ENST00000593104 ABCC8Q09428 1581 aa20.82■□□□□ 0.92
PRKCSH-220ENST00000593104 POLA1P09884 1462 aaPredicted RBP20.8■□□□□ 0.92
PRKCSH-220ENST00000593104 RAD54L2Q9Y4B4 1467 aa20.8■□□□□ 0.92
PRKCSH-220ENST00000593104 FBLN2P98095 1184 aa20.77■□□□□ 0.92
PRKCSH-220ENST00000593104 CYB5RLQ6IPT4 315 aa20.76■□□□□ 0.91
PRKCSH-220ENST00000593104 TDRD9Q8NDG6 1382 aaKnown RBP20.72■□□□□ 0.91
PRKCSH-220ENST00000593104 ARAP1Q96P48 1450 aa20.69■□□□□ 0.9
PRKCSH-220ENST00000593104 SOGA1O94964 1423 aa20.68■□□□□ 0.9
PRKCSH-220ENST00000593104 FGD5Q6ZNL6 1462 aa20.67■□□□□ 0.9
PRKCSH-220ENST00000593104 SNAPC4Q5SXM2 1469 aa20.64■□□□□ 0.89
PRKCSH-220ENST00000593104 CUX1P39880 1505 aa20.63■□□□□ 0.89
PRKCSH-220ENST00000593104 TRHP20396 242 aaPredicted RBP20.58■□□□□ 0.89
PRKCSH-220ENST00000593104 CLASP1Q7Z460 1538 aa20.53■□□□□ 0.88
PRKCSH-220ENST00000593104 CHMP7Q8WUX9 453 aaPredicted RBP20.52■□□□□ 0.88
PRKCSH-220ENST00000593104 WDR97A6NE52 1622 aa20.51■□□□□ 0.87
PRKCSH-220ENST00000593104 GRIN2BQ13224 1484 aa20.49■□□□□ 0.87
PRKCSH-220ENST00000593104 MAGI1Q96QZ7 1491 aaPredicted RBP20.48■□□□□ 0.87
PRKCSH-220ENST00000593104 SYNJ1O43426 1573 aa20.47■□□□□ 0.87
PRKCSH-220ENST00000593104 PBRM1Q86U86 1689 aa20.47■□□□□ 0.87
PRKCSH-220ENST00000593104 SUPT5HO00267 1087 aaKnown RBP20.45■□□□□ 0.86
PRKCSH-220ENST00000593104 SYNJ2O15056 1496 aa20.43■□□□□ 0.86
PRKCSH-220ENST00000593104 GAPVD1Q14C86 1478 aa20.42■□□□□ 0.86
PRKCSH-220ENST00000593104 ABCA5Q8WWZ7 1642 aa20.38■□□□□ 0.85
PRKCSH-220ENST00000593104 ABCA10Q8WWZ4 1543 aa20.36■□□□□ 0.85
PRKCSH-220ENST00000593104 ERCC6L2Q5T890 1561 aa20.33■□□□□ 0.84
PRKCSH-220ENST00000593104 GRIN2AQ12879 1464 aa20.25■□□□□ 0.83
PRKCSH-220ENST00000593104 ADAMTS12P58397 1594 aa20.25■□□□□ 0.83
PRKCSH-220ENST00000593104 CEP170Q5SW79 1584 aa20.25■□□□□ 0.83
PRKCSH-220ENST00000593104 WRNQ14191 1432 aaPredicted RBP eCLIP20.22■□□□□ 0.83
PRKCSH-220ENST00000593104 BIVM-ERCC5R4GMW8 1640 aa20.21■□□□□ 0.83
PRKCSH-220ENST00000593104 TOP2BQ02880 1626 aa20.2■□□□□ 0.82
PRKCSH-220ENST00000593104 NUP160Q12769 1436 aa20.18■□□□□ 0.82
PRKCSH-220ENST00000593104 FHAD1B1AJZ9 1412 aa20.12■□□□□ 0.81
PRKCSH-220ENST00000593104 SHROOM2Q13796 1616 aa20.11■□□□□ 0.81
PRKCSH-220ENST00000593104 ERICH3Q5RHP9 1530 aa20.07■□□□□ 0.8
PRKCSH-220ENST00000593104 PRG4Q92954 1404 aaPredicted RBP20.03■□□□□ 0.8
PRKCSH-220ENST00000593104 AEBP2Q6ZN18 517 aaPredicted RBP20.03■□□□□ 0.8
PRKCSH-220ENST00000593104 KIF13AQ9H1H9 1805 aa19.98■□□□□ 0.79
PRKCSH-220ENST00000593104 JPH4Q96JJ6 628 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms