RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 NISCHQ9Y2I1 1504 aa23.07■■□□□ 1.28
DDX39A-220ENST00000593008 CCDC180Q9P1Z9 1646 aa20.47■□□□□ 0.87
DDX39A-220ENST00000593008 ABCC9O60706 1549 aa20.28■□□□□ 0.84
DDX39A-220ENST00000593008 DCAF8L2P0C7V8 631 aa19.47■□□□□ 0.71
DDX39A-220ENST00000593008 RB1CC1Q8TDY2 1594 aa19.37■□□□□ 0.69
DDX39A-220ENST00000593008 NACADO15069 1562 aa19.31■□□□□ 0.68
DDX39A-220ENST00000593008 ZCCHC6Q5VYS8 1495 aaKnown RBP19.21■□□□□ 0.67
DDX39A-220ENST00000593008 MYO15BQ96JP2 1530 aa19.11■□□□□ 0.65
DDX39A-220ENST00000593008 DCAF1Q9Y4B6 1507 aa19.01■□□□□ 0.63
DDX39A-220ENST00000593008 PABPN1Q86U42 306 aaKnown RBP eCLIP19■□□□□ 0.63
DDX39A-220ENST00000593008 UNC13AQ9UPW8 1703 aa18.89■□□□□ 0.61
DDX39A-220ENST00000593008 BICRAQ9NZM4 1560 aa18.81■□□□□ 0.6
DDX39A-220ENST00000593008 SCRIBQ14160 1630 aa18.79■□□□□ 0.6
DDX39A-220ENST00000593008 DNAJC5BQ9UF47 199 aa18.75■□□□□ 0.59
DDX39A-220ENST00000593008 SHROOM4Q9ULL8 1493 aa18.52■□□□□ 0.55
DDX39A-220ENST00000593008 EIF4G1Q04637 1599 aaKnown RBP18.33■□□□□ 0.52
DDX39A-220ENST00000593008 CC2D2AQ9P2K1 1620 aa18.28■□□□□ 0.52
DDX39A-220ENST00000593008 CECR2Q9BXF3 1484 aa18.21■□□□□ 0.51
DDX39A-220ENST00000593008 SMARCA4P51532 1647 aa17.9■□□□□ 0.46
DDX39A-220ENST00000593008 ATAD2BQ9ULI0 1458 aa17.87■□□□□ 0.45
DDX39A-220ENST00000593008 BAZ1AQ9NRL2 1556 aaPredicted RBP17.87■□□□□ 0.45
DDX39A-220ENST00000593008 NCAPD3P42695 1498 aa17.84■□□□□ 0.45
DDX39A-220ENST00000593008 MROH2BQ7Z745 1585 aa17.81■□□□□ 0.44
DDX39A-220ENST00000593008 SMARCA2P51531 1590 aa17.8■□□□□ 0.44
DDX39A-220ENST00000593008 BAZ1BQ9UIG0 1483 aaKnown RBP17.72■□□□□ 0.43
DDX39A-220ENST00000593008 HMGXB3Q12766 1538 aa17.72■□□□□ 0.43
DDX39A-220ENST00000593008 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
DDX39A-220ENST00000593008 RSF1Q96T23 1441 aaPredicted RBP17.64■□□□□ 0.41
DDX39A-220ENST00000593008 WIZO95785 1651 aa17.6■□□□□ 0.41
DDX39A-220ENST00000593008 NESP48681 1621 aa17.52■□□□□ 0.4
DDX39A-220ENST00000593008 ERCC6Q03468 1493 aa17.48■□□□□ 0.39
DDX39A-220ENST00000593008 SUPT5HO00267 1087 aaKnown RBP17.47■□□□□ 0.39
DDX39A-220ENST00000593008 TOP2AP11388 1531 aaKnown RBP17.38■□□□□ 0.37
DDX39A-220ENST00000593008 LAMC3Q9Y6N6 1575 aa17.36■□□□□ 0.37
DDX39A-220ENST00000593008 CADPSQ9ULU8 1353 aa17.35■□□□□ 0.37
DDX39A-220ENST00000593008 PDS5BQ9NTI5 1447 aa17.3■□□□□ 0.36
DDX39A-220ENST00000593008 CUX2O14529 1486 aa17.25■□□□□ 0.35
DDX39A-220ENST00000593008 KIF21AQ7Z4S6 1674 aa17.23■□□□□ 0.35
DDX39A-220ENST00000593008 CCDC88BA6NC98 1476 aa17.22■□□□□ 0.35
DDX39A-220ENST00000593008 CFTRP13569 1480 aa17.2■□□□□ 0.34
DDX39A-220ENST00000593008 THOC2Q8NI27 1593 aaKnown RBP17.19■□□□□ 0.34
DDX39A-220ENST00000593008 DNAJC5Q9H3Z4 198 aa17.18■□□□□ 0.34
DDX39A-220ENST00000593008 FANCD2Q9BXW9 1451 aa17.16■□□□□ 0.34
DDX39A-220ENST00000593008 MRC2Q9UBG0 1479 aa17.13■□□□□ 0.33
DDX39A-220ENST00000593008 CEP164Q9UPV0 1460 aa17.13■□□□□ 0.33
DDX39A-220ENST00000593008 WDR62O43379 1518 aa17.05■□□□□ 0.32
DDX39A-220ENST00000593008 URB2Q14146 1524 aaKnown RBP17■□□□□ 0.31
DDX39A-220ENST00000593008 PRDM2Q13029 1718 aa16.96■□□□□ 0.31
DDX39A-220ENST00000593008 TOPBP1Q92547 1522 aa16.86■□□□□ 0.29
DDX39A-220ENST00000593008 DNMBPQ6XZF7 1577 aa16.81■□□□□ 0.28
DDX39A-220ENST00000593008 ABCC8Q09428 1581 aa16.8■□□□□ 0.28
DDX39A-220ENST00000593008 IFT140Q96RY7 1462 aa16.77■□□□□ 0.28
DDX39A-220ENST00000593008 ZNF608Q9ULD9 1512 aaPredicted RBP16.76■□□□□ 0.27
DDX39A-220ENST00000593008 CUX1P39880 1505 aa16.71■□□□□ 0.27
DDX39A-220ENST00000593008 POLA1P09884 1462 aaPredicted RBP16.71■□□□□ 0.27
DDX39A-220ENST00000593008 RAD54L2Q9Y4B4 1467 aa16.69■□□□□ 0.26
DDX39A-220ENST00000593008 FGD5Q6ZNL6 1462 aa16.67■□□□□ 0.26
DDX39A-220ENST00000593008 SOGA1O94964 1423 aa16.67■□□□□ 0.26
DDX39A-220ENST00000593008 TARBP1Q13395 1621 aaKnown RBP16.66■□□□□ 0.26
DDX39A-220ENST00000593008 AQRO60306 1485 aaKnown RBP eCLIP16.66■□□□□ 0.261e-6■■■■□ 26.1
DDX39A-220ENST00000593008 EIF4G3O43432 1585 aaKnown RBP16.64■□□□□ 0.25
DDX39A-220ENST00000593008 SYNJ1O43426 1573 aa16.63■□□□□ 0.25
DDX39A-220ENST00000593008 TDRD9Q8NDG6 1382 aaKnown RBP16.63■□□□□ 0.25
DDX39A-220ENST00000593008 OSCARQ8IYS5 282 aa16.6■□□□□ 0.25
DDX39A-220ENST00000593008 WRNQ14191 1432 aaPredicted RBP eCLIP16.58■□□□□ 0.243e-13■■■■■ 62.7
DDX39A-220ENST00000593008 FBLN2P98095 1184 aa16.53■□□□□ 0.24
DDX39A-220ENST00000593008 TOP2BQ02880 1626 aa16.52■□□□□ 0.23
DDX39A-220ENST00000593008 BIVM-ERCC5R4GMW8 1640 aa16.52■□□□□ 0.23
DDX39A-220ENST00000593008 SNAPC4Q5SXM2 1469 aa16.48■□□□□ 0.23
DDX39A-220ENST00000593008 ABCA10Q8WWZ4 1543 aa16.47■□□□□ 0.23
DDX39A-220ENST00000593008 CHIC1Q5VXU3 224 aa16.47■□□□□ 0.23
DDX39A-220ENST00000593008 GRIN2BQ13224 1484 aa16.46■□□□□ 0.23
DDX39A-220ENST00000593008 GAPVD1Q14C86 1478 aa16.46■□□□□ 0.23
DDX39A-220ENST00000593008 WDR97A6NE52 1622 aa16.45■□□□□ 0.22
DDX39A-220ENST00000593008 CHD1O14646 1710 aa16.42■□□□□ 0.22
DDX39A-220ENST00000593008 CHMP7Q8WUX9 453 aaPredicted RBP16.42■□□□□ 0.22
DDX39A-220ENST00000593008 TRIM41Q8WV44 630 aa16.41■□□□□ 0.22
DDX39A-220ENST00000593008 MAGI1Q96QZ7 1491 aaPredicted RBP16.41■□□□□ 0.22
DDX39A-220ENST00000593008 ABCA5Q8WWZ7 1642 aa16.4■□□□□ 0.22
DDX39A-220ENST00000593008 PBRM1Q86U86 1689 aa16.37■□□□□ 0.21
DDX39A-220ENST00000593008 SYNJ2O15056 1496 aa16.36■□□□□ 0.21
DDX39A-220ENST00000593008 RIMBP3CA6NJZ7 1639 aa16.3■□□□□ 0.2
DDX39A-220ENST00000593008 RIMBP3BA6NNM3 1639 aa16.3■□□□□ 0.2
DDX39A-220ENST00000593008 RIMBP3Q9UFD9 1639 aa16.3■□□□□ 0.2
DDX39A-220ENST00000593008 RUSC2Q8N2Y8 1516 aa16.3■□□□□ 0.2
DDX39A-220ENST00000593008 ARHGEF11O15085 1522 aa16.29■□□□□ 0.2
DDX39A-220ENST00000593008 ADAMTS12P58397 1594 aa16.27■□□□□ 0.2
DDX39A-220ENST00000593008 ERICH3Q5RHP9 1530 aa16.25■□□□□ 0.19
DDX39A-220ENST00000593008 CLASP1Q7Z460 1538 aa16.25■□□□□ 0.19
DDX39A-220ENST00000593008 GRIN2AQ12879 1464 aa16.25■□□□□ 0.19
DDX39A-220ENST00000593008 FHAD1B1AJZ9 1412 aa16.25■□□□□ 0.19
DDX39A-220ENST00000593008 CYB5RLQ6IPT4 315 aa16.23■□□□□ 0.19
DDX39A-220ENST00000593008 KIF27Q86VH2 1401 aa16.22■□□□□ 0.19
DDX39A-220ENST00000593008 IGF1RP08069 1367 aa16.19■□□□□ 0.18
DDX39A-220ENST00000593008 FAM9AQ8IZU1 332 aaPredicted RBP16.18■□□□□ 0.18
DDX39A-220ENST00000593008 CEP170Q5SW79 1584 aa16.17■□□□□ 0.18
DDX39A-220ENST00000593008 ARAP1Q96P48 1450 aa16.17■□□□□ 0.18
DDX39A-220ENST00000593008 NUP160Q12769 1436 aa16.17■□□□□ 0.18
DDX39A-220ENST00000593008 CARMIL1Q5VZK9 1371 aa16.09■□□□□ 0.17
DDX39A-220ENST00000593008 ERCC6L2Q5T890 1561 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms