RNA–Protein interactions for RNA: ENST00000592776.1

PTPN2-215, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 5

Gene PTPN2, Length 772 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-215ENST00000592776 NISCHQ9Y2I1 1504 aa54.56■■■■■ 6.32
PTPN2-215ENST00000592776 CCDC180Q9P1Z9 1646 aa48.69■■■■■ 5.38
PTPN2-215ENST00000592776 ABCC9O60706 1549 aa48.53■■■■■ 5.36
PTPN2-215ENST00000592776 RB1CC1Q8TDY2 1594 aa46.21■■■■■ 4.99
PTPN2-215ENST00000592776 DCAF8L2P0C7V8 631 aa46.07■■■■■ 4.97
PTPN2-215ENST00000592776 NACADO15069 1562 aa45.97■■■■■ 4.95
PTPN2-215ENST00000592776 MYO15BQ96JP2 1530 aa45.4■■■■■ 4.86
PTPN2-215ENST00000592776 PABPN1Q86U42 306 aaKnown RBP eCLIP45.31■■■■■ 4.84
PTPN2-215ENST00000592776 ZCCHC6Q5VYS8 1495 aaKnown RBP45.29■■■■■ 4.84
PTPN2-215ENST00000592776 DNAJC5BQ9UF47 199 aa45.28■■■■■ 4.84
PTPN2-215ENST00000592776 UNC13AQ9UPW8 1703 aa45.22■■■■■ 4.83
PTPN2-215ENST00000592776 DCAF1Q9Y4B6 1507 aa44.99■■■■■ 4.79
PTPN2-215ENST00000592776 BICRAQ9NZM4 1560 aa44.94■■■■■ 4.78
PTPN2-215ENST00000592776 SCRIBQ14160 1630 aa44.54■■■■■ 4.72
PTPN2-215ENST00000592776 SHROOM4Q9ULL8 1493 aa44.16■■■■■ 4.66
PTPN2-215ENST00000592776 CC2D2AQ9P2K1 1620 aa43.79■■■■■ 4.6
PTPN2-215ENST00000592776 EIF4G1Q04637 1599 aaKnown RBP43.77■■■■■ 4.6
PTPN2-215ENST00000592776 CECR2Q9BXF3 1484 aa43.61■■■■■ 4.57
PTPN2-215ENST00000592776 NCAPD3P42695 1498 aa42.48■■■■■ 4.39
PTPN2-215ENST00000592776 SMARCA4P51532 1647 aa42.47■■■■■ 4.39
PTPN2-215ENST00000592776 ATAD2BQ9ULI0 1458 aa42.44■■■■■ 4.38
PTPN2-215ENST00000592776 BAZ1AQ9NRL2 1556 aaPredicted RBP42.27■■■■■ 4.36
PTPN2-215ENST00000592776 SMARCA2P51531 1590 aa42.27■■■■■ 4.36
PTPN2-215ENST00000592776 HMGXB3Q12766 1538 aa42.15■■■■■ 4.34
PTPN2-215ENST00000592776 MROH2BQ7Z745 1585 aa42.11■■■■■ 4.33
PTPN2-215ENST00000592776 BAZ1BQ9UIG0 1483 aaKnown RBP42.04■■■■■ 4.32
PTPN2-215ENST00000592776 PEG3Q9GZU2 1588 aa42■■■■■ 4.31
PTPN2-215ENST00000592776 NESP48681 1621 aa41.81■■■■■ 4.28
PTPN2-215ENST00000592776 ERCC6Q03468 1493 aa41.79■■■■■ 4.28
PTPN2-215ENST00000592776 WIZO95785 1651 aa41.62■■■■■ 4.25
PTPN2-215ENST00000592776 CUX2O14529 1486 aa41.52■■■■■ 4.24
PTPN2-215ENST00000592776 LAMC3Q9Y6N6 1575 aa41.42■■■■■ 4.22
PTPN2-215ENST00000592776 RSF1Q96T23 1441 aaPredicted RBP41.36■■■■■ 4.21
PTPN2-215ENST00000592776 CADPSQ9ULU8 1353 aa41.24■■■■■ 4.19
PTPN2-215ENST00000592776 KIF21AQ7Z4S6 1674 aa41.21■■■■■ 4.19
PTPN2-215ENST00000592776 THOC2Q8NI27 1593 aaKnown RBP41.2■■■■■ 4.19
PTPN2-215ENST00000592776 PDS5BQ9NTI5 1447 aa41.19■■■■■ 4.18
PTPN2-215ENST00000592776 DNAJC5Q9H3Z4 198 aa41.18■■■■■ 4.18
PTPN2-215ENST00000592776 TOP2AP11388 1531 aaKnown RBP41.04■■■■■ 4.16
PTPN2-215ENST00000592776 MRC2Q9UBG0 1479 aa40.84■■■■■ 4.13
PTPN2-215ENST00000592776 CFTRP13569 1480 aa40.83■■■■■ 4.13
PTPN2-215ENST00000592776 FANCD2Q9BXW9 1451 aa40.77■■■■■ 4.12
PTPN2-215ENST00000592776 CEP164Q9UPV0 1460 aa40.75■■■■■ 4.11
PTPN2-215ENST00000592776 WDR62O43379 1518 aa40.71■■■■■ 4.11
PTPN2-215ENST00000592776 CCDC88BA6NC98 1476 aa40.65■■■■■ 4.1
PTPN2-215ENST00000592776 URB2Q14146 1524 aaKnown RBP40.45■■■■■ 4.07
PTPN2-215ENST00000592776 PRDM2Q13029 1718 aa40.36■■■■■ 4.05
PTPN2-215ENST00000592776 TOPBP1Q92547 1522 aa40.05■■■■■ 4
PTPN2-215ENST00000592776 SUPT5HO00267 1087 aaKnown RBP39.94■■■■□ 3.98
PTPN2-215ENST00000592776 ZNF608Q9ULD9 1512 aaPredicted RBP39.92■■■■□ 3.98
PTPN2-215ENST00000592776 IFT140Q96RY7 1462 aa39.91■■■■□ 3.98
PTPN2-215ENST00000592776 DNMBPQ6XZF7 1577 aa39.89■■■■□ 3.98
PTPN2-215ENST00000592776 ABCC8Q09428 1581 aa39.89■■■■□ 3.98
PTPN2-215ENST00000592776 OSCARQ8IYS5 282 aa39.78■■■■□ 3.96
PTPN2-215ENST00000592776 POLA1P09884 1462 aaPredicted RBP39.67■■■■□ 3.94
PTPN2-215ENST00000592776 TARBP1Q13395 1621 aaKnown RBP39.65■■■■□ 3.94
PTPN2-215ENST00000592776 EIF4G3O43432 1585 aaKnown RBP39.63■■■■□ 3.94
PTPN2-215ENST00000592776 TRIM41Q8WV44 630 aa39.63■■■■□ 3.93
PTPN2-215ENST00000592776 AQRO60306 1485 aaKnown RBP eCLIP39.61■■■■□ 3.934e-6■■■■■ 31
PTPN2-215ENST00000592776 RAD54L2Q9Y4B4 1467 aa39.6■■■■□ 3.93
PTPN2-215ENST00000592776 CUX1P39880 1505 aa39.53■■■■□ 3.92
PTPN2-215ENST00000592776 SOGA1O94964 1423 aa39.51■■■■□ 3.92
PTPN2-215ENST00000592776 FGD5Q6ZNL6 1462 aa39.49■■■■□ 3.91
PTPN2-215ENST00000592776 TDRD9Q8NDG6 1382 aaKnown RBP39.45■■■■□ 3.91
PTPN2-215ENST00000592776 FBLN2P98095 1184 aa39.3■■■■□ 3.88
PTPN2-215ENST00000592776 CHD1O14646 1710 aa39.28■■■■□ 3.88
PTPN2-215ENST00000592776 RIMBP3CA6NJZ7 1639 aa39.22■■■■□ 3.87
PTPN2-215ENST00000592776 RIMBP3BA6NNM3 1639 aa39.22■■■■□ 3.87
PTPN2-215ENST00000592776 RIMBP3Q9UFD9 1639 aa39.22■■■■□ 3.87
PTPN2-215ENST00000592776 SNAPC4Q5SXM2 1469 aa39.17■■■■□ 3.86
PTPN2-215ENST00000592776 WDR97A6NE52 1622 aa39.13■■■■□ 3.85
PTPN2-215ENST00000592776 ARHGEF11O15085 1522 aa39.12■■■■□ 3.85
PTPN2-215ENST00000592776 GRIN2BQ13224 1484 aa39.07■■■■□ 3.85
PTPN2-215ENST00000592776 CHMP7Q8WUX9 453 aaPredicted RBP39.02■■■■□ 3.84
PTPN2-215ENST00000592776 GAPVD1Q14C86 1478 aa39.02■■■■□ 3.84
PTPN2-215ENST00000592776 ABCA10Q8WWZ4 1543 aa39.01■■■■□ 3.84
PTPN2-215ENST00000592776 MAGI1Q96QZ7 1491 aaPredicted RBP39■■■■□ 3.83
PTPN2-215ENST00000592776 WRNQ14191 1432 aaPredicted RBP eCLIP38.98■■■■□ 3.83
PTPN2-215ENST00000592776 SYNJ1O43426 1573 aa38.96■■■■□ 3.83
PTPN2-215ENST00000592776 PBRM1Q86U86 1689 aa38.94■■■■□ 3.82
PTPN2-215ENST00000592776 TOP2BQ02880 1626 aa38.92■■■■□ 3.82
PTPN2-215ENST00000592776 BIVM-ERCC5R4GMW8 1640 aa38.92■■■■□ 3.82
PTPN2-215ENST00000592776 ABCA5Q8WWZ7 1642 aa38.92■■■■□ 3.82
PTPN2-215ENST00000592776 CYB5RLQ6IPT4 315 aa38.9■■■■□ 3.82
PTPN2-215ENST00000592776 SYNJ2O15056 1496 aa38.9■■■■□ 3.82
PTPN2-215ENST00000592776 CLASP1Q7Z460 1538 aa38.83■■■■□ 3.81
PTPN2-215ENST00000592776 ARAP1Q96P48 1450 aa38.79■■■■□ 3.8
PTPN2-215ENST00000592776 ADAMTS12P58397 1594 aa38.6■■■■□ 3.77
PTPN2-215ENST00000592776 GRIN2AQ12879 1464 aa38.59■■■■□ 3.77
PTPN2-215ENST00000592776 FHAD1B1AJZ9 1412 aa38.52■■■■□ 3.76
PTPN2-215ENST00000592776 ERICH3Q5RHP9 1530 aa38.5■■■■□ 3.75
PTPN2-215ENST00000592776 CEP170Q5SW79 1584 aa38.46■■■■□ 3.75
PTPN2-215ENST00000592776 NUP160Q12769 1436 aa38.44■■■■□ 3.74
PTPN2-215ENST00000592776 ERCC6L2Q5T890 1561 aa38.36■■■■□ 3.73
PTPN2-215ENST00000592776 TRHP20396 242 aaPredicted RBP38.34■■■■□ 3.73
PTPN2-215ENST00000592776 IGF1RP08069 1367 aa38.2■■■■□ 3.71
PTPN2-215ENST00000592776 KIF27Q86VH2 1401 aa38.2■■■■□ 3.71
PTPN2-215ENST00000592776 SHROOM2Q13796 1616 aa38.2■■■■□ 3.7
PTPN2-215ENST00000592776 JPH4Q96JJ6 628 aa38.11■■■■□ 3.69
PTPN2-215ENST00000592776 PRG4Q92954 1404 aaPredicted RBP38.08■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms