RNA–Protein interactions for RNA: ENST00000592176.1

APOC1-207, Transcript of apolipoprotein C1, humanhuman

TSL 5

Gene APOC1, Length 514 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOC1-207ENST00000592176 NISCHQ9Y2I1 1504 aa23.04■■□□□ 1.28
APOC1-207ENST00000592176 ABCC9O60706 1549 aa21.01■□□□□ 0.95
APOC1-207ENST00000592176 CCDC180Q9P1Z9 1646 aa20.64■□□□□ 0.9
APOC1-207ENST00000592176 DNAJC5BQ9UF47 199 aa19.99■□□□□ 0.79
APOC1-207ENST00000592176 RB1CC1Q8TDY2 1594 aa19.84■□□□□ 0.77
APOC1-207ENST00000592176 DCAF8L2P0C7V8 631 aa19.76■□□□□ 0.75
APOC1-207ENST00000592176 NACADO15069 1562 aa19.66■□□□□ 0.74
APOC1-207ENST00000592176 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.73
APOC1-207ENST00000592176 MYO15BQ96JP2 1530 aa19.31■□□□□ 0.68
APOC1-207ENST00000592176 UNC13AQ9UPW8 1703 aa19.25■□□□□ 0.67
APOC1-207ENST00000592176 BICRAQ9NZM4 1560 aa19.24■□□□□ 0.67
APOC1-207ENST00000592176 ZCCHC6Q5VYS8 1495 aaKnown RBP19■□□□□ 0.63
APOC1-207ENST00000592176 DCAF1Q9Y4B6 1507 aa18.99■□□□□ 0.63
APOC1-207ENST00000592176 SHROOM4Q9ULL8 1493 aa18.97■□□□□ 0.63
APOC1-207ENST00000592176 CECR2Q9BXF3 1484 aa18.95■□□□□ 0.62
APOC1-207ENST00000592176 CC2D2AQ9P2K1 1620 aa18.89■□□□□ 0.62
APOC1-207ENST00000592176 SCRIBQ14160 1630 aa18.86■□□□□ 0.61
APOC1-207ENST00000592176 EIF4G1Q04637 1599 aaKnown RBP18.81■□□□□ 0.6
APOC1-207ENST00000592176 DNAJC5Q9H3Z4 198 aa18.53■□□□□ 0.56
APOC1-207ENST00000592176 NCAPD3P42695 1498 aa18.21■□□□□ 0.51
APOC1-207ENST00000592176 CUX2O14529 1486 aa18.16■□□□□ 0.5
APOC1-207ENST00000592176 ERCC6Q03468 1493 aa18.16■□□□□ 0.5
APOC1-207ENST00000592176 ATAD2BQ9ULI0 1458 aa18.11■□□□□ 0.49
APOC1-207ENST00000592176 SMARCA2P51531 1590 aa18.01■□□□□ 0.47
APOC1-207ENST00000592176 NESP48681 1621 aa17.97■□□□□ 0.47
APOC1-207ENST00000592176 HMGXB3Q12766 1538 aa17.97■□□□□ 0.47
APOC1-207ENST00000592176 SMARCA4P51532 1647 aa17.95■□□□□ 0.46
APOC1-207ENST00000592176 BAZ1BQ9UIG0 1483 aaKnown RBP17.91■□□□□ 0.46
APOC1-207ENST00000592176 BAZ1AQ9NRL2 1556 aaPredicted RBP17.88■□□□□ 0.45
APOC1-207ENST00000592176 PEG3Q9GZU2 1588 aa17.79■□□□□ 0.44
APOC1-207ENST00000592176 PDS5BQ9NTI5 1447 aa17.77■□□□□ 0.44
APOC1-207ENST00000592176 LAMC3Q9Y6N6 1575 aa17.77■□□□□ 0.44
APOC1-207ENST00000592176 MROH2BQ7Z745 1585 aa17.74■□□□□ 0.43
APOC1-207ENST00000592176 THOC2Q8NI27 1593 aaKnown RBP17.72■□□□□ 0.43
APOC1-207ENST00000592176 CADPSQ9ULU8 1353 aa17.68■□□□□ 0.42
APOC1-207ENST00000592176 TRIM41Q8WV44 630 aa17.64■□□□□ 0.41
APOC1-207ENST00000592176 KIF21AQ7Z4S6 1674 aa17.61■□□□□ 0.41
APOC1-207ENST00000592176 MRC2Q9UBG0 1479 aa17.56■□□□□ 0.4
APOC1-207ENST00000592176 WIZO95785 1651 aa17.48■□□□□ 0.39
APOC1-207ENST00000592176 WDR62O43379 1518 aa17.48■□□□□ 0.39
APOC1-207ENST00000592176 CEP164Q9UPV0 1460 aa17.45■□□□□ 0.38
APOC1-207ENST00000592176 OSCARQ8IYS5 282 aa17.45■□□□□ 0.38
APOC1-207ENST00000592176 FANCD2Q9BXW9 1451 aa17.44■□□□□ 0.38
APOC1-207ENST00000592176 CFTRP13569 1480 aa17.38■□□□□ 0.37
APOC1-207ENST00000592176 RSF1Q96T23 1441 aaPredicted RBP17.35■□□□□ 0.37
APOC1-207ENST00000592176 URB2Q14146 1524 aaKnown RBP17.28■□□□□ 0.36
APOC1-207ENST00000592176 TOP2AP11388 1531 aaKnown RBP17.26■□□□□ 0.35
APOC1-207ENST00000592176 CCDC88BA6NC98 1476 aa17.14■□□□□ 0.33
APOC1-207ENST00000592176 IFT140Q96RY7 1462 aa17.13■□□□□ 0.33
APOC1-207ENST00000592176 ZNF608Q9ULD9 1512 aaPredicted RBP17.11■□□□□ 0.33
APOC1-207ENST00000592176 CYB5RLQ6IPT4 315 aa17.06■□□□□ 0.32
APOC1-207ENST00000592176 RIMBP3CA6NJZ7 1639 aa17.06■□□□□ 0.32
APOC1-207ENST00000592176 RIMBP3BA6NNM3 1639 aa17.06■□□□□ 0.32
APOC1-207ENST00000592176 RIMBP3Q9UFD9 1639 aa17.06■□□□□ 0.32
APOC1-207ENST00000592176 TOPBP1Q92547 1522 aa17.06■□□□□ 0.32
APOC1-207ENST00000592176 ABCC8Q09428 1581 aa17.05■□□□□ 0.32
APOC1-207ENST00000592176 FBLN2P98095 1184 aa17.01■□□□□ 0.31
APOC1-207ENST00000592176 ARHGEF11O15085 1522 aa17.01■□□□□ 0.31
APOC1-207ENST00000592176 PRDM2Q13029 1718 aa16.99■□□□□ 0.31
APOC1-207ENST00000592176 AQRO60306 1485 aaKnown RBP eCLIP16.99■□□□□ 0.311e-7■■■■□ 25.3
APOC1-207ENST00000592176 TRHP20396 242 aaPredicted RBP16.96■□□□□ 0.31
APOC1-207ENST00000592176 DNMBPQ6XZF7 1577 aa16.94■□□□□ 0.3
APOC1-207ENST00000592176 EIF4G3O43432 1585 aaKnown RBP16.92■□□□□ 0.3
APOC1-207ENST00000592176 SOGA1O94964 1423 aa16.88■□□□□ 0.29
APOC1-207ENST00000592176 TDRD9Q8NDG6 1382 aaKnown RBP16.88■□□□□ 0.29
APOC1-207ENST00000592176 POLA1P09884 1462 aaPredicted RBP16.87■□□□□ 0.29
APOC1-207ENST00000592176 TARBP1Q13395 1621 aaKnown RBP16.87■□□□□ 0.29
APOC1-207ENST00000592176 RAD54L2Q9Y4B4 1467 aa16.86■□□□□ 0.29
APOC1-207ENST00000592176 CHMP7Q8WUX9 453 aaPredicted RBP16.84■□□□□ 0.29
APOC1-207ENST00000592176 ARAP1Q96P48 1450 aa16.83■□□□□ 0.28
APOC1-207ENST00000592176 CHD1O14646 1710 aa16.81■□□□□ 0.28
APOC1-207ENST00000592176 SNAPC4Q5SXM2 1469 aa16.74■□□□□ 0.27
APOC1-207ENST00000592176 FGD5Q6ZNL6 1462 aa16.73■□□□□ 0.27
APOC1-207ENST00000592176 GRIN2BQ13224 1484 aa16.7■□□□□ 0.26
APOC1-207ENST00000592176 MAGI1Q96QZ7 1491 aaPredicted RBP16.69■□□□□ 0.26
APOC1-207ENST00000592176 CUX1P39880 1505 aa16.67■□□□□ 0.26
APOC1-207ENST00000592176 SYNJ1O43426 1573 aa16.67■□□□□ 0.26
APOC1-207ENST00000592176 WDR97A6NE52 1622 aa16.67■□□□□ 0.26
APOC1-207ENST00000592176 CLASP1Q7Z460 1538 aa16.66■□□□□ 0.26
APOC1-207ENST00000592176 SYNJ2O15056 1496 aa16.65■□□□□ 0.26
APOC1-207ENST00000592176 AEBP2Q6ZN18 517 aaPredicted RBP16.63■□□□□ 0.25
APOC1-207ENST00000592176 GAPVD1Q14C86 1478 aa16.61■□□□□ 0.25
APOC1-207ENST00000592176 SUPT5HO00267 1087 aaKnown RBP16.55■□□□□ 0.24
APOC1-207ENST00000592176 ABCA10Q8WWZ4 1543 aa16.54■□□□□ 0.24
APOC1-207ENST00000592176 WRNQ14191 1432 aaPredicted RBP eCLIP16.49■□□□□ 0.23
APOC1-207ENST00000592176 PBRM1Q86U86 1689 aa16.47■□□□□ 0.23
APOC1-207ENST00000592176 GRIN2AQ12879 1464 aa16.46■□□□□ 0.23
APOC1-207ENST00000592176 ABCA5Q8WWZ7 1642 aa16.45■□□□□ 0.22
APOC1-207ENST00000592176 ERCC6L2Q5T890 1561 aa16.42■□□□□ 0.22
APOC1-207ENST00000592176 FHAD1B1AJZ9 1412 aa16.41■□□□□ 0.22
APOC1-207ENST00000592176 NUP160Q12769 1436 aa16.41■□□□□ 0.22
APOC1-207ENST00000592176 JPH4Q96JJ6 628 aa16.38■□□□□ 0.21
APOC1-207ENST00000592176 CEP170Q5SW79 1584 aa16.38■□□□□ 0.21
APOC1-207ENST00000592176 ADAMTS12P58397 1594 aa16.34■□□□□ 0.21
APOC1-207ENST00000592176 PRG4Q92954 1404 aaPredicted RBP16.34■□□□□ 0.21
APOC1-207ENST00000592176 NPM1P06748 294 aaKnown RBP eCLIP16.33■□□□□ 0.2
APOC1-207ENST00000592176 TOP2BQ02880 1626 aa16.32■□□□□ 0.2
APOC1-207ENST00000592176 ERICH3Q5RHP9 1530 aa16.3■□□□□ 0.2
APOC1-207ENST00000592176 FAM69CQ0P6D2 419 aa16.29■□□□□ 0.2
APOC1-207ENST00000592176 SHROOM2Q13796 1616 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms