RNA–Protein interactions for RNA: ENST00000591547.5

RETREG3-211, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-211ENST00000591547 NISCHQ9Y2I1 1504 aa25.11■■□□□ 1.61
RETREG3-211ENST00000591547 ABCC9O60706 1549 aa23.08■■□□□ 1.28
RETREG3-211ENST00000591547 CCDC180Q9P1Z9 1646 aa22.63■■□□□ 1.21
RETREG3-211ENST00000591547 DNAJC5BQ9UF47 199 aa22■■□□□ 1.11
RETREG3-211ENST00000591547 RB1CC1Q8TDY2 1594 aa21.7■■□□□ 1.06
RETREG3-211ENST00000591547 PABPN1Q86U42 306 aaKnown RBP eCLIP21.47■■□□□ 1.03
RETREG3-211ENST00000591547 NACADO15069 1562 aa21.45■■□□□ 1.02
RETREG3-211ENST00000591547 DCAF8L2P0C7V8 631 aa21.44■■□□□ 1.02
RETREG3-211ENST00000591547 UNC13AQ9UPW8 1703 aa21.35■■□□□ 1.01
RETREG3-211ENST00000591547 BICRAQ9NZM4 1560 aa21.18■□□□□ 0.98
RETREG3-211ENST00000591547 MYO15BQ96JP2 1530 aa20.98■□□□□ 0.95
RETREG3-211ENST00000591547 CC2D2AQ9P2K1 1620 aa20.8■□□□□ 0.92
RETREG3-211ENST00000591547 CECR2Q9BXF3 1484 aa20.76■□□□□ 0.91
RETREG3-211ENST00000591547 SCRIBQ14160 1630 aa20.72■□□□□ 0.91
RETREG3-211ENST00000591547 ZCCHC6Q5VYS8 1495 aaKnown RBP20.72■□□□□ 0.91
RETREG3-211ENST00000591547 EIF4G1Q04637 1599 aaKnown RBP20.64■□□□□ 0.9
RETREG3-211ENST00000591547 SHROOM4Q9ULL8 1493 aa20.64■□□□□ 0.89
RETREG3-211ENST00000591547 DCAF1Q9Y4B6 1507 aa20.63■□□□□ 0.89
RETREG3-211ENST00000591547 DNAJC5Q9H3Z4 198 aa20.33■□□□□ 0.85
RETREG3-211ENST00000591547 CUX2O14529 1486 aa19.89■□□□□ 0.77
RETREG3-211ENST00000591547 ERCC6Q03468 1493 aa19.88■□□□□ 0.77
RETREG3-211ENST00000591547 NCAPD3P42695 1498 aa19.82■□□□□ 0.76
RETREG3-211ENST00000591547 ATAD2BQ9ULI0 1458 aa19.76■□□□□ 0.75
RETREG3-211ENST00000591547 NESP48681 1621 aa19.76■□□□□ 0.75
RETREG3-211ENST00000591547 SMARCA4P51532 1647 aa19.67■□□□□ 0.74
RETREG3-211ENST00000591547 SMARCA2P51531 1590 aa19.63■□□□□ 0.73
RETREG3-211ENST00000591547 HMGXB3Q12766 1538 aa19.63■□□□□ 0.73
RETREG3-211ENST00000591547 THOC2Q8NI27 1593 aaKnown RBP19.56■□□□□ 0.72
RETREG3-211ENST00000591547 BAZ1BQ9UIG0 1483 aaKnown RBP19.54■□□□□ 0.72
RETREG3-211ENST00000591547 KIF21AQ7Z4S6 1674 aa19.48■□□□□ 0.71
RETREG3-211ENST00000591547 BAZ1AQ9NRL2 1556 aaPredicted RBP19.47■□□□□ 0.71
RETREG3-211ENST00000591547 LAMC3Q9Y6N6 1575 aa19.43■□□□□ 0.7
RETREG3-211ENST00000591547 PEG3Q9GZU2 1588 aa19.41■□□□□ 0.7
RETREG3-211ENST00000591547 MROH2BQ7Z745 1585 aa19.4■□□□□ 0.7
RETREG3-211ENST00000591547 TRIM41Q8WV44 630 aa19.4■□□□□ 0.7
RETREG3-211ENST00000591547 PDS5BQ9NTI5 1447 aa19.32■□□□□ 0.68
RETREG3-211ENST00000591547 CADPSQ9ULU8 1353 aa19.22■□□□□ 0.67
RETREG3-211ENST00000591547 MRC2Q9UBG0 1479 aa19.21■□□□□ 0.67
RETREG3-211ENST00000591547 WIZO95785 1651 aa19.18■□□□□ 0.66
RETREG3-211ENST00000591547 WDR62O43379 1518 aa19.17■□□□□ 0.66
RETREG3-211ENST00000591547 CEP164Q9UPV0 1460 aa19.07■□□□□ 0.64
RETREG3-211ENST00000591547 FANCD2Q9BXW9 1451 aa19.03■□□□□ 0.64
RETREG3-211ENST00000591547 OSCARQ8IYS5 282 aa18.97■□□□□ 0.63
RETREG3-211ENST00000591547 URB2Q14146 1524 aaKnown RBP18.94■□□□□ 0.62
RETREG3-211ENST00000591547 CFTRP13569 1480 aa18.93■□□□□ 0.62
RETREG3-211ENST00000591547 RSF1Q96T23 1441 aaPredicted RBP18.84■□□□□ 0.61
RETREG3-211ENST00000591547 RIMBP3CA6NJZ7 1639 aa18.84■□□□□ 0.61
RETREG3-211ENST00000591547 RIMBP3BA6NNM3 1639 aa18.84■□□□□ 0.61
RETREG3-211ENST00000591547 RIMBP3Q9UFD9 1639 aa18.84■□□□□ 0.61
RETREG3-211ENST00000591547 TOP2AP11388 1531 aaKnown RBP18.82■□□□□ 0.6
RETREG3-211ENST00000591547 ZNF608Q9ULD9 1512 aaPredicted RBP18.79■□□□□ 0.6
RETREG3-211ENST00000591547 PRDM2Q13029 1718 aa18.74■□□□□ 0.59
RETREG3-211ENST00000591547 ARHGEF11O15085 1522 aa18.7■□□□□ 0.58
RETREG3-211ENST00000591547 IFT140Q96RY7 1462 aa18.67■□□□□ 0.58
RETREG3-211ENST00000591547 CCDC88BA6NC98 1476 aa18.66■□□□□ 0.58
RETREG3-211ENST00000591547 TOPBP1Q92547 1522 aa18.64■□□□□ 0.58
RETREG3-211ENST00000591547 CYB5RLQ6IPT4 315 aa18.63■□□□□ 0.57
RETREG3-211ENST00000591547 EIF4G3O43432 1585 aaKnown RBP18.63■□□□□ 0.57
RETREG3-211ENST00000591547 CHD1O14646 1710 aa18.6■□□□□ 0.57
RETREG3-211ENST00000591547 AQRO60306 1485 aaKnown RBP eCLIP18.57■□□□□ 0.565e-6■■□□□ 14.3
RETREG3-211ENST00000591547 DNMBPQ6XZF7 1577 aa18.53■□□□□ 0.56
RETREG3-211ENST00000591547 TARBP1Q13395 1621 aaKnown RBP18.52■□□□□ 0.56
RETREG3-211ENST00000591547 TRHP20396 242 aaPredicted RBP18.52■□□□□ 0.56
RETREG3-211ENST00000591547 FBLN2P98095 1184 aa18.52■□□□□ 0.56
RETREG3-211ENST00000591547 ARAP1Q96P48 1450 aa18.52■□□□□ 0.55
RETREG3-211ENST00000591547 ABCC8Q09428 1581 aa18.47■□□□□ 0.55
RETREG3-211ENST00000591547 POLA1P09884 1462 aaPredicted RBP18.44■□□□□ 0.54
RETREG3-211ENST00000591547 RAD54L2Q9Y4B4 1467 aa18.44■□□□□ 0.54
RETREG3-211ENST00000591547 TDRD9Q8NDG6 1382 aaKnown RBP18.4■□□□□ 0.54
RETREG3-211ENST00000591547 SOGA1O94964 1423 aa18.34■□□□□ 0.53
RETREG3-211ENST00000591547 SNAPC4Q5SXM2 1469 aa18.33■□□□□ 0.53
RETREG3-211ENST00000591547 CLASP1Q7Z460 1538 aa18.31■□□□□ 0.52
RETREG3-211ENST00000591547 FGD5Q6ZNL6 1462 aa18.28■□□□□ 0.52
RETREG3-211ENST00000591547 CHMP7Q8WUX9 453 aaPredicted RBP18.26■□□□□ 0.51
RETREG3-211ENST00000591547 CUX1P39880 1505 aa18.23■□□□□ 0.51
RETREG3-211ENST00000591547 SYNJ1O43426 1573 aa18.23■□□□□ 0.51
RETREG3-211ENST00000591547 GRIN2BQ13224 1484 aa18.19■□□□□ 0.5
RETREG3-211ENST00000591547 MAGI1Q96QZ7 1491 aaPredicted RBP18.19■□□□□ 0.5
RETREG3-211ENST00000591547 AEBP2Q6ZN18 517 aaPredicted RBP18.18■□□□□ 0.5
RETREG3-211ENST00000591547 WDR97A6NE52 1622 aa18.17■□□□□ 0.5
RETREG3-211ENST00000591547 PBRM1Q86U86 1689 aa18.16■□□□□ 0.5
RETREG3-211ENST00000591547 SYNJ2O15056 1496 aa18.16■□□□□ 0.5
RETREG3-211ENST00000591547 GAPVD1Q14C86 1478 aa18.14■□□□□ 0.49
RETREG3-211ENST00000591547 ERCC6L2Q5T890 1561 aa18.11■□□□□ 0.49
RETREG3-211ENST00000591547 ABCA5Q8WWZ7 1642 aa18.05■□□□□ 0.48
RETREG3-211ENST00000591547 ABCA10Q8WWZ4 1543 aa18.01■□□□□ 0.47
RETREG3-211ENST00000591547 CEP170Q5SW79 1584 aa17.98■□□□□ 0.47
RETREG3-211ENST00000591547 GRIN2AQ12879 1464 aa17.97■□□□□ 0.47
RETREG3-211ENST00000591547 ADAMTS12P58397 1594 aa17.94■□□□□ 0.46
RETREG3-211ENST00000591547 NUP160Q12769 1436 aa17.9■□□□□ 0.46
RETREG3-211ENST00000591547 KIF13AQ9H1H9 1805 aa17.9■□□□□ 0.46
RETREG3-211ENST00000591547 SHROOM2Q13796 1616 aa17.89■□□□□ 0.45
RETREG3-211ENST00000591547 SUPT5HO00267 1087 aaKnown RBP17.85■□□□□ 0.45
RETREG3-211ENST00000591547 WRNQ14191 1432 aaPredicted RBP eCLIP17.85■□□□□ 0.45
RETREG3-211ENST00000591547 BIVM-ERCC5R4GMW8 1640 aa17.83■□□□□ 0.44
RETREG3-211ENST00000591547 FHAD1B1AJZ9 1412 aa17.82■□□□□ 0.44
RETREG3-211ENST00000591547 TOP2BQ02880 1626 aa17.81■□□□□ 0.44
RETREG3-211ENST00000591547 PRG4Q92954 1404 aaPredicted RBP17.8■□□□□ 0.44
RETREG3-211ENST00000591547 ERICH3Q5RHP9 1530 aa17.76■□□□□ 0.43
RETREG3-211ENST00000591547 JPH4Q96JJ6 628 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms