RNA–Protein interactions for RNA: ENST00000591315.5

VMP1-211, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-211ENST00000591315 NISCHQ9Y2I1 1504 aa28.04■■■□□ 2.08
VMP1-211ENST00000591315 CCDC180Q9P1Z9 1646 aa24.85■■□□□ 1.57
VMP1-211ENST00000591315 ABCC9O60706 1549 aa24.47■■□□□ 1.51
VMP1-211ENST00000591315 DCAF8L2P0C7V8 631 aa23.54■■□□□ 1.36
VMP1-211ENST00000591315 RB1CC1Q8TDY2 1594 aa23.41■■□□□ 1.34
VMP1-211ENST00000591315 NACADO15069 1562 aa23.38■■□□□ 1.33
VMP1-211ENST00000591315 ZCCHC6Q5VYS8 1495 aaKnown RBP23.35■■□□□ 1.33
VMP1-211ENST00000591315 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
VMP1-211ENST00000591315 DCAF1Q9Y4B6 1507 aa23.12■■□□□ 1.29
VMP1-211ENST00000591315 UNC13AQ9UPW8 1703 aa22.98■■□□□ 1.27
VMP1-211ENST00000591315 PABPN1Q86U42 306 aaKnown RBP eCLIP22.92■■□□□ 1.26
VMP1-211ENST00000591315 BICRAQ9NZM4 1560 aa22.8■■□□□ 1.24
VMP1-211ENST00000591315 SCRIBQ14160 1630 aa22.8■■□□□ 1.24
VMP1-211ENST00000591315 DNAJC5BQ9UF47 199 aa22.56■■□□□ 1.2
VMP1-211ENST00000591315 SHROOM4Q9ULL8 1493 aa22.36■■□□□ 1.17
VMP1-211ENST00000591315 EIF4G1Q04637 1599 aaKnown RBP22.16■■□□□ 1.14
VMP1-211ENST00000591315 CC2D2AQ9P2K1 1620 aa22.09■■□□□ 1.13
VMP1-211ENST00000591315 CECR2Q9BXF3 1484 aa21.94■■□□□ 1.1
VMP1-211ENST00000591315 AEBP2Q6ZN18 517 aaPredicted RBP21.93■■□□□ 1.1
VMP1-211ENST00000591315 SMARCA4P51532 1647 aa21.76■■□□□ 1.07
VMP1-211ENST00000591315 BAZ1AQ9NRL2 1556 aaPredicted RBP21.69■■□□□ 1.06
VMP1-211ENST00000591315 MROH2BQ7Z745 1585 aa21.67■■□□□ 1.06
VMP1-211ENST00000591315 ATAD2BQ9ULI0 1458 aa21.65■■□□□ 1.06
VMP1-211ENST00000591315 NCAPD3P42695 1498 aa21.6■■□□□ 1.05
VMP1-211ENST00000591315 SMARCA2P51531 1590 aa21.56■■□□□ 1.04
VMP1-211ENST00000591315 PEG3Q9GZU2 1588 aa21.49■■□□□ 1.03
VMP1-211ENST00000591315 HMGXB3Q12766 1538 aa21.46■■□□□ 1.03
VMP1-211ENST00000591315 BAZ1BQ9UIG0 1483 aaKnown RBP21.45■■□□□ 1.02
VMP1-211ENST00000591315 WIZO95785 1651 aa21.44■■□□□ 1.02
VMP1-211ENST00000591315 RSF1Q96T23 1441 aaPredicted RBP21.41■■□□□ 1.02
VMP1-211ENST00000591315 NESP48681 1621 aa21.21■□□□□ 0.99
VMP1-211ENST00000591315 TOP2AP11388 1531 aaKnown RBP21.14■□□□□ 0.97
VMP1-211ENST00000591315 CHIC1Q5VXU3 224 aa21.11■□□□□ 0.97
VMP1-211ENST00000591315 ERCC6Q03468 1493 aa21.01■□□□□ 0.95
VMP1-211ENST00000591315 LAMC3Q9Y6N6 1575 aa21■□□□□ 0.95
VMP1-211ENST00000591315 CADPSQ9ULU8 1353 aa20.99■□□□□ 0.95
VMP1-211ENST00000591315 CCDC88BA6NC98 1476 aa20.94■□□□□ 0.94
VMP1-211ENST00000591315 SUPT5HO00267 1087 aaKnown RBP20.94■□□□□ 0.94
VMP1-211ENST00000591315 KIF21AQ7Z4S6 1674 aa20.9■□□□□ 0.94
VMP1-211ENST00000591315 PDS5BQ9NTI5 1447 aa20.87■□□□□ 0.93
VMP1-211ENST00000591315 CFTRP13569 1480 aa20.87■□□□□ 0.93
VMP1-211ENST00000591315 THOC2Q8NI27 1593 aaKnown RBP20.8■□□□□ 0.92
VMP1-211ENST00000591315 FANCD2Q9BXW9 1451 aa20.76■□□□□ 0.91
VMP1-211ENST00000591315 CUX2O14529 1486 aa20.74■□□□□ 0.91
VMP1-211ENST00000591315 CEP164Q9UPV0 1460 aa20.71■□□□□ 0.91
VMP1-211ENST00000591315 MRC2Q9UBG0 1479 aa20.69■□□□□ 0.9
VMP1-211ENST00000591315 PRDM2Q13029 1718 aa20.67■□□□□ 0.9
VMP1-211ENST00000591315 WDR62O43379 1518 aa20.61■□□□□ 0.89
VMP1-211ENST00000591315 URB2Q14146 1524 aaKnown RBP20.6■□□□□ 0.89
VMP1-211ENST00000591315 TOPBP1Q92547 1522 aa20.44■□□□□ 0.86
VMP1-211ENST00000591315 DNMBPQ6XZF7 1577 aa20.38■□□□□ 0.85
VMP1-211ENST00000591315 ABCC8Q09428 1581 aa20.34■□□□□ 0.85
VMP1-211ENST00000591315 CUX1P39880 1505 aa20.32■□□□□ 0.84
VMP1-211ENST00000591315 ZNF608Q9ULD9 1512 aaPredicted RBP20.28■□□□□ 0.84
VMP1-211ENST00000591315 POLA1P09884 1462 aaPredicted RBP20.27■□□□□ 0.84
VMP1-211ENST00000591315 IFT140Q96RY7 1462 aa20.26■□□□□ 0.83
VMP1-211ENST00000591315 RAD54L2Q9Y4B4 1467 aa20.24■□□□□ 0.83
VMP1-211ENST00000591315 FGD5Q6ZNL6 1462 aa20.23■□□□□ 0.83
VMP1-211ENST00000591315 TARBP1Q13395 1621 aaKnown RBP20.22■□□□□ 0.83
VMP1-211ENST00000591315 DNAJC5Q9H3Z4 198 aa20.2■□□□□ 0.82
VMP1-211ENST00000591315 SOGA1O94964 1423 aa20.19■□□□□ 0.82
VMP1-211ENST00000591315 AQRO60306 1485 aaKnown RBP eCLIP20.17■□□□□ 0.82
VMP1-211ENST00000591315 SYNJ1O43426 1573 aa20.14■□□□□ 0.81
VMP1-211ENST00000591315 WRNQ14191 1432 aaPredicted RBP eCLIP20.14■□□□□ 0.81
VMP1-211ENST00000591315 EIF4G3O43432 1585 aaKnown RBP20.13■□□□□ 0.81
VMP1-211ENST00000591315 TDRD9Q8NDG6 1382 aaKnown RBP20.13■□□□□ 0.81
VMP1-211ENST00000591315 TOP2BQ02880 1626 aa20.08■□□□□ 0.8
VMP1-211ENST00000591315 BIVM-ERCC5R4GMW8 1640 aa20.08■□□□□ 0.8
VMP1-211ENST00000591315 WDR97A6NE52 1622 aa20.03■□□□□ 0.8
VMP1-211ENST00000591315 ABCA10Q8WWZ4 1543 aa19.99■□□□□ 0.79
VMP1-211ENST00000591315 GAPVD1Q14C86 1478 aa19.94■□□□□ 0.78
VMP1-211ENST00000591315 OSCARQ8IYS5 282 aa19.94■□□□□ 0.78
VMP1-211ENST00000591315 SNAPC4Q5SXM2 1469 aa19.93■□□□□ 0.78
VMP1-211ENST00000591315 ABCA5Q8WWZ7 1642 aa19.92■□□□□ 0.78
VMP1-211ENST00000591315 FBLN2P98095 1184 aa19.92■□□□□ 0.78
VMP1-211ENST00000591315 GRIN2BQ13224 1484 aa19.92■□□□□ 0.78
VMP1-211ENST00000591315 CHD1O14646 1710 aa19.9■□□□□ 0.78
VMP1-211ENST00000591315 PBRM1Q86U86 1689 aa19.89■□□□□ 0.77
VMP1-211ENST00000591315 MAGI1Q96QZ7 1491 aaPredicted RBP19.84■□□□□ 0.77
VMP1-211ENST00000591315 CHMP7Q8WUX9 453 aaPredicted RBP19.81■□□□□ 0.76
VMP1-211ENST00000591315 SYNJ2O15056 1496 aa19.78■□□□□ 0.76
VMP1-211ENST00000591315 ADAMTS12P58397 1594 aa19.74■□□□□ 0.75
VMP1-211ENST00000591315 ERICH3Q5RHP9 1530 aa19.72■□□□□ 0.75
VMP1-211ENST00000591315 KIF27Q86VH2 1401 aa19.7■□□□□ 0.74
VMP1-211ENST00000591315 TRIM41Q8WV44 630 aa19.7■□□□□ 0.74
VMP1-211ENST00000591315 IGF1RP08069 1367 aa19.69■□□□□ 0.74
VMP1-211ENST00000591315 FHAD1B1AJZ9 1412 aa19.68■□□□□ 0.74
VMP1-211ENST00000591315 GRIN2AQ12879 1464 aa19.67■□□□□ 0.74
VMP1-211ENST00000591315 RUSC2Q8N2Y8 1516 aa19.67■□□□□ 0.74
VMP1-211ENST00000591315 CLASP1Q7Z460 1538 aa19.66■□□□□ 0.74
VMP1-211ENST00000591315 RIMBP3CA6NJZ7 1639 aa19.65■□□□□ 0.74
VMP1-211ENST00000591315 RIMBP3BA6NNM3 1639 aa19.65■□□□□ 0.74
VMP1-211ENST00000591315 RIMBP3Q9UFD9 1639 aa19.65■□□□□ 0.74
VMP1-211ENST00000591315 ARHGEF11O15085 1522 aa19.64■□□□□ 0.73
VMP1-211ENST00000591315 CEP170Q5SW79 1584 aa19.61■□□□□ 0.73
VMP1-211ENST00000591315 NUP160Q12769 1436 aa19.59■□□□□ 0.73
VMP1-211ENST00000591315 CARMIL1Q5VZK9 1371 aa19.55■□□□□ 0.72
VMP1-211ENST00000591315 CUL7Q14999 1698 aa19.53■□□□□ 0.72
VMP1-211ENST00000591315 CYB5RLQ6IPT4 315 aa19.51■□□□□ 0.71
VMP1-211ENST00000591315 ARAP1Q96P48 1450 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms