RNA–Protein interactions for RNA: ENST00000591275.5

DDX39A-216, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 484 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-216ENST00000591275 NISCHQ9Y2I1 1504 aa40.37■■■■■ 4.05
DDX39A-216ENST00000591275 ABCC9O60706 1549 aa36.76■■■■□ 3.48
DDX39A-216ENST00000591275 CCDC180Q9P1Z9 1646 aa36.34■■■■□ 3.41
DDX39A-216ENST00000591275 DNAJC5BQ9UF47 199 aa34.8■■■■□ 3.16
DDX39A-216ENST00000591275 RB1CC1Q8TDY2 1594 aa34.78■■■■□ 3.16
DDX39A-216ENST00000591275 NACADO15069 1562 aa34.43■■■■□ 3.1
DDX39A-216ENST00000591275 DCAF8L2P0C7V8 631 aa34.33■■■■□ 3.09
DDX39A-216ENST00000591275 PABPN1Q86U42 306 aaKnown RBP eCLIP34.2■■■■□ 3.07
DDX39A-216ENST00000591275 UNC13AQ9UPW8 1703 aa34.02■■■■□ 3.04
DDX39A-216ENST00000591275 MYO15BQ96JP2 1530 aa33.8■■■■□ 3
DDX39A-216ENST00000591275 BICRAQ9NZM4 1560 aa33.8■■■■□ 3
DDX39A-216ENST00000591275 ZCCHC6Q5VYS8 1495 aaKnown RBP33.37■■■□□ 2.93
DDX39A-216ENST00000591275 DCAF1Q9Y4B6 1507 aa33.27■■■□□ 2.92
DDX39A-216ENST00000591275 SHROOM4Q9ULL8 1493 aa33.22■■■□□ 2.91
DDX39A-216ENST00000591275 SCRIBQ14160 1630 aa33.17■■■□□ 2.9
DDX39A-216ENST00000591275 CC2D2AQ9P2K1 1620 aa33.16■■■□□ 2.9
DDX39A-216ENST00000591275 CECR2Q9BXF3 1484 aa33.12■■■□□ 2.89
DDX39A-216ENST00000591275 EIF4G1Q04637 1599 aaKnown RBP33■■■□□ 2.87
DDX39A-216ENST00000591275 DNAJC5Q9H3Z4 198 aa32.14■■■□□ 2.74
DDX39A-216ENST00000591275 NCAPD3P42695 1498 aa31.8■■■□□ 2.68
DDX39A-216ENST00000591275 ERCC6Q03468 1493 aa31.75■■■□□ 2.67
DDX39A-216ENST00000591275 CUX2O14529 1486 aa31.74■■■□□ 2.67
DDX39A-216ENST00000591275 ATAD2BQ9ULI0 1458 aa31.69■■■□□ 2.66
DDX39A-216ENST00000591275 SMARCA4P51532 1647 aa31.57■■■□□ 2.64
DDX39A-216ENST00000591275 SMARCA2P51531 1590 aa31.56■■■□□ 2.64
DDX39A-216ENST00000591275 HMGXB3Q12766 1538 aa31.53■■■□□ 2.64
DDX39A-216ENST00000591275 NESP48681 1621 aa31.49■■■□□ 2.63
DDX39A-216ENST00000591275 BAZ1BQ9UIG0 1483 aaKnown RBP31.37■■■□□ 2.61
DDX39A-216ENST00000591275 BAZ1AQ9NRL2 1556 aaPredicted RBP31.34■■■□□ 2.61
DDX39A-216ENST00000591275 PEG3Q9GZU2 1588 aa31.22■■■□□ 2.59
DDX39A-216ENST00000591275 THOC2Q8NI27 1593 aaKnown RBP31.19■■■□□ 2.58
DDX39A-216ENST00000591275 LAMC3Q9Y6N6 1575 aa31.14■■■□□ 2.58
DDX39A-216ENST00000591275 MROH2BQ7Z745 1585 aa31.13■■■□□ 2.57
DDX39A-216ENST00000591275 KIF21AQ7Z4S6 1674 aa31.05■■■□□ 2.56
DDX39A-216ENST00000591275 PDS5BQ9NTI5 1447 aa30.98■■■□□ 2.55
DDX39A-216ENST00000591275 CADPSQ9ULU8 1353 aa30.84■■■□□ 2.53
DDX39A-216ENST00000591275 WIZO95785 1651 aa30.76■■■□□ 2.51
DDX39A-216ENST00000591275 MRC2Q9UBG0 1479 aa30.75■■■□□ 2.51
DDX39A-216ENST00000591275 TRIM41Q8WV44 630 aa30.68■■■□□ 2.5
DDX39A-216ENST00000591275 WDR62O43379 1518 aa30.68■■■□□ 2.5
DDX39A-216ENST00000591275 CEP164Q9UPV0 1460 aa30.57■■■□□ 2.48
DDX39A-216ENST00000591275 FANCD2Q9BXW9 1451 aa30.51■■■□□ 2.48
DDX39A-216ENST00000591275 CFTRP13569 1480 aa30.41■■■□□ 2.46
DDX39A-216ENST00000591275 RSF1Q96T23 1441 aaPredicted RBP30.35■■■□□ 2.45
DDX39A-216ENST00000591275 TOP2AP11388 1531 aaKnown RBP30.3■■■□□ 2.44
DDX39A-216ENST00000591275 URB2Q14146 1524 aaKnown RBP30.29■■■□□ 2.44
DDX39A-216ENST00000591275 OSCARQ8IYS5 282 aa30.27■■■□□ 2.44
DDX39A-216ENST00000591275 PRDM2Q13029 1718 aa30.07■■■□□ 2.4
DDX39A-216ENST00000591275 ZNF608Q9ULD9 1512 aaPredicted RBP29.99■■■□□ 2.39
DDX39A-216ENST00000591275 CCDC88BA6NC98 1476 aa29.99■■■□□ 2.39
DDX39A-216ENST00000591275 IFT140Q96RY7 1462 aa29.95■■■□□ 2.39
DDX39A-216ENST00000591275 RIMBP3CA6NJZ7 1639 aa29.93■■■□□ 2.38
DDX39A-216ENST00000591275 RIMBP3BA6NNM3 1639 aa29.93■■■□□ 2.38
DDX39A-216ENST00000591275 RIMBP3Q9UFD9 1639 aa29.93■■■□□ 2.38
DDX39A-216ENST00000591275 TOPBP1Q92547 1522 aa29.9■■■□□ 2.38
DDX39A-216ENST00000591275 ARHGEF11O15085 1522 aa29.81■■■□□ 2.36
DDX39A-216ENST00000591275 EIF4G3O43432 1585 aaKnown RBP29.78■■■□□ 2.36
DDX39A-216ENST00000591275 ABCC8Q09428 1581 aa29.75■■■□□ 2.35
DDX39A-216ENST00000591275 DNMBPQ6XZF7 1577 aa29.74■■■□□ 2.35
DDX39A-216ENST00000591275 AQRO60306 1485 aaKnown RBP eCLIP29.68■■■□□ 2.34
DDX39A-216ENST00000591275 TARBP1Q13395 1621 aaKnown RBP29.65■■■□□ 2.34
DDX39A-216ENST00000591275 CYB5RLQ6IPT4 315 aa29.64■■■□□ 2.34
DDX39A-216ENST00000591275 CHD1O14646 1710 aa29.64■■■□□ 2.34
DDX39A-216ENST00000591275 FBLN2P98095 1184 aa29.59■■■□□ 2.33
DDX39A-216ENST00000591275 POLA1P09884 1462 aaPredicted RBP29.56■■■□□ 2.32
DDX39A-216ENST00000591275 RAD54L2Q9Y4B4 1467 aa29.5■■■□□ 2.31
DDX39A-216ENST00000591275 ARAP1Q96P48 1450 aa29.49■■■□□ 2.31
DDX39A-216ENST00000591275 TDRD9Q8NDG6 1382 aaKnown RBP29.45■■■□□ 2.31
DDX39A-216ENST00000591275 TRHP20396 242 aaPredicted RBP29.43■■■□□ 2.3
DDX39A-216ENST00000591275 SOGA1O94964 1423 aa29.43■■■□□ 2.3
DDX39A-216ENST00000591275 SNAPC4Q5SXM2 1469 aa29.35■■■□□ 2.29
DDX39A-216ENST00000591275 FGD5Q6ZNL6 1462 aa29.35■■■□□ 2.29
DDX39A-216ENST00000591275 CUX1P39880 1505 aa29.27■■■□□ 2.28
DDX39A-216ENST00000591275 CLASP1Q7Z460 1538 aa29.26■■■□□ 2.27
DDX39A-216ENST00000591275 CHMP7Q8WUX9 453 aaPredicted RBP29.26■■■□□ 2.27
DDX39A-216ENST00000591275 WDR97A6NE52 1622 aa29.25■■■□□ 2.27
DDX39A-216ENST00000591275 MAGI1Q96QZ7 1491 aaPredicted RBP29.22■■■□□ 2.27
DDX39A-216ENST00000591275 SYNJ1O43426 1573 aa29.21■■■□□ 2.27
DDX39A-216ENST00000591275 GRIN2BQ13224 1484 aa29.2■■■□□ 2.26
DDX39A-216ENST00000591275 SYNJ2O15056 1496 aa29.14■■■□□ 2.26
DDX39A-216ENST00000591275 PBRM1Q86U86 1689 aa29.08■■■□□ 2.25
DDX39A-216ENST00000591275 GAPVD1Q14C86 1478 aa29.07■■■□□ 2.24
DDX39A-216ENST00000591275 ABCA10Q8WWZ4 1543 aa28.96■■■□□ 2.23
DDX39A-216ENST00000591275 ABCA5Q8WWZ7 1642 aa28.96■■■□□ 2.23
DDX39A-216ENST00000591275 SUPT5HO00267 1087 aaKnown RBP28.84■■■□□ 2.21
DDX39A-216ENST00000591275 ERCC6L2Q5T890 1561 aa28.84■■■□□ 2.21
DDX39A-216ENST00000591275 GRIN2AQ12879 1464 aa28.83■■■□□ 2.21
DDX39A-216ENST00000591275 AEBP2Q6ZN18 517 aaPredicted RBP28.81■■■□□ 2.2
DDX39A-216ENST00000591275 WRNQ14191 1432 aaPredicted RBP eCLIP28.78■■■□□ 2.23e-13■■■■■ 62.7
DDX39A-216ENST00000591275 ADAMTS12P58397 1594 aa28.77■■■□□ 2.2
DDX39A-216ENST00000591275 CEP170Q5SW79 1584 aa28.75■■■□□ 2.19
DDX39A-216ENST00000591275 NUP160Q12769 1436 aa28.73■■■□□ 2.19
DDX39A-216ENST00000591275 TOP2BQ02880 1626 aa28.68■■■□□ 2.18
DDX39A-216ENST00000591275 BIVM-ERCC5R4GMW8 1640 aa28.68■■■□□ 2.18
DDX39A-216ENST00000591275 FHAD1B1AJZ9 1412 aa28.67■■■□□ 2.18
DDX39A-216ENST00000591275 SHROOM2Q13796 1616 aa28.64■■■□□ 2.18
DDX39A-216ENST00000591275 ERICH3Q5RHP9 1530 aa28.59■■■□□ 2.17
DDX39A-216ENST00000591275 PRG4Q92954 1404 aaPredicted RBP28.52■■■□□ 2.16
DDX39A-216ENST00000591275 KIF13AQ9H1H9 1805 aa28.47■■■□□ 2.15
DDX39A-216ENST00000591275 JPH4Q96JJ6 628 aa28.46■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms