RNA–Protein interactions for RNA: ENST00000591028.1

NFIX-213, Transcript of nuclear factor I X, humanhuman

TSL 3

Gene NFIX, Length 582 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFIX-213ENST00000591028 NISCHQ9Y2I1 1504 aa38.57■■■■□ 3.76
NFIX-213ENST00000591028 CCDC180Q9P1Z9 1646 aa34.67■■■■□ 3.14
NFIX-213ENST00000591028 ABCC9O60706 1549 aa34.67■■■■□ 3.14
NFIX-213ENST00000591028 RB1CC1Q8TDY2 1594 aa32.96■■■□□ 2.87
NFIX-213ENST00000591028 NACADO15069 1562 aa32.7■■■□□ 2.83
NFIX-213ENST00000591028 DCAF8L2P0C7V8 631 aa32.49■■■□□ 2.79
NFIX-213ENST00000591028 DNAJC5BQ9UF47 199 aa32.46■■■□□ 2.79
NFIX-213ENST00000591028 UNC13AQ9UPW8 1703 aa32.37■■■□□ 2.77
NFIX-213ENST00000591028 PABPN1Q86U42 306 aaKnown RBP eCLIP32.22■■■□□ 2.75
NFIX-213ENST00000591028 MYO15BQ96JP2 1530 aa32.2■■■□□ 2.74
NFIX-213ENST00000591028 BICRAQ9NZM4 1560 aa32.06■■■□□ 2.72
NFIX-213ENST00000591028 ZCCHC6Q5VYS8 1495 aaKnown RBP31.99■■■□□ 2.71
NFIX-213ENST00000591028 DCAF1Q9Y4B6 1507 aa31.81■■■□□ 2.68
NFIX-213ENST00000591028 SCRIBQ14160 1630 aa31.65■■■□□ 2.66
NFIX-213ENST00000591028 SHROOM4Q9ULL8 1493 aa31.52■■■□□ 2.64
NFIX-213ENST00000591028 CC2D2AQ9P2K1 1620 aa31.33■■■□□ 2.61
NFIX-213ENST00000591028 EIF4G1Q04637 1599 aaKnown RBP31.26■■■□□ 2.59
NFIX-213ENST00000591028 CECR2Q9BXF3 1484 aa31.2■■■□□ 2.58
NFIX-213ENST00000591028 NCAPD3P42695 1498 aa30.15■■■□□ 2.42
NFIX-213ENST00000591028 SMARCA4P51532 1647 aa30.14■■■□□ 2.42
NFIX-213ENST00000591028 ATAD2BQ9ULI0 1458 aa30.11■■■□□ 2.41
NFIX-213ENST00000591028 SMARCA2P51531 1590 aa30.03■■■□□ 2.4
NFIX-213ENST00000591028 HMGXB3Q12766 1538 aa30.01■■■□□ 2.39
NFIX-213ENST00000591028 BAZ1AQ9NRL2 1556 aaPredicted RBP29.94■■■□□ 2.38
NFIX-213ENST00000591028 ERCC6Q03468 1493 aa29.91■■■□□ 2.38
NFIX-213ENST00000591028 BAZ1BQ9UIG0 1483 aaKnown RBP29.84■■■□□ 2.37
NFIX-213ENST00000591028 CUX2O14529 1486 aa29.82■■■□□ 2.36
NFIX-213ENST00000591028 NESP48681 1621 aa29.8■■■□□ 2.36
NFIX-213ENST00000591028 PEG3Q9GZU2 1588 aa29.8■■■□□ 2.36
NFIX-213ENST00000591028 MROH2BQ7Z745 1585 aa29.76■■■□□ 2.35
NFIX-213ENST00000591028 DNAJC5Q9H3Z4 198 aa29.74■■■□□ 2.35
NFIX-213ENST00000591028 THOC2Q8NI27 1593 aaKnown RBP29.54■■■□□ 2.32
NFIX-213ENST00000591028 LAMC3Q9Y6N6 1575 aa29.54■■■□□ 2.32
NFIX-213ENST00000591028 KIF21AQ7Z4S6 1674 aa29.49■■■□□ 2.31
NFIX-213ENST00000591028 WIZO95785 1651 aa29.44■■■□□ 2.3
NFIX-213ENST00000591028 PDS5BQ9NTI5 1447 aa29.3■■■□□ 2.28
NFIX-213ENST00000591028 CADPSQ9ULU8 1353 aa29.23■■■□□ 2.27
NFIX-213ENST00000591028 MRC2Q9UBG0 1479 aa29.12■■■□□ 2.25
NFIX-213ENST00000591028 RSF1Q96T23 1441 aaPredicted RBP29.08■■■□□ 2.25
NFIX-213ENST00000591028 WDR62O43379 1518 aa29.07■■■□□ 2.24
NFIX-213ENST00000591028 TOP2AP11388 1531 aaKnown RBP29.03■■■□□ 2.24
NFIX-213ENST00000591028 CEP164Q9UPV0 1460 aa29.02■■■□□ 2.24
NFIX-213ENST00000591028 FANCD2Q9BXW9 1451 aa28.97■■■□□ 2.23
NFIX-213ENST00000591028 CFTRP13569 1480 aa28.93■■■□□ 2.22
NFIX-213ENST00000591028 PRDM2Q13029 1718 aa28.8■■■□□ 2.2
NFIX-213ENST00000591028 URB2Q14146 1524 aaKnown RBP28.77■■■□□ 2.2
NFIX-213ENST00000591028 CCDC88BA6NC98 1476 aa28.66■■■□□ 2.18
NFIX-213ENST00000591028 TRIM41Q8WV44 630 aa28.52■■■□□ 2.16
NFIX-213ENST00000591028 TOPBP1Q92547 1522 aa28.43■■■□□ 2.14
NFIX-213ENST00000591028 ZNF608Q9ULD9 1512 aaPredicted RBP28.42■■■□□ 2.14
NFIX-213ENST00000591028 IFT140Q96RY7 1462 aa28.4■■■□□ 2.14
NFIX-213ENST00000591028 SUPT5HO00267 1087 aaKnown RBP28.37■■■□□ 2.13
NFIX-213ENST00000591028 OSCARQ8IYS5 282 aa28.36■■■□□ 2.13
NFIX-213ENST00000591028 DNMBPQ6XZF7 1577 aa28.35■■■□□ 2.13
NFIX-213ENST00000591028 EIF4G3O43432 1585 aaKnown RBP28.32■■■□□ 2.12
NFIX-213ENST00000591028 ABCC8Q09428 1581 aa28.27■■■□□ 2.12
NFIX-213ENST00000591028 TARBP1Q13395 1621 aaKnown RBP28.21■■■□□ 2.11
NFIX-213ENST00000591028 RIMBP3CA6NJZ7 1639 aa28.19■■■□□ 2.1
NFIX-213ENST00000591028 RIMBP3BA6NNM3 1639 aa28.19■■■□□ 2.1
NFIX-213ENST00000591028 RIMBP3Q9UFD9 1639 aa28.19■■■□□ 2.1
NFIX-213ENST00000591028 POLA1P09884 1462 aaPredicted RBP28.15■■■□□ 2.1
NFIX-213ENST00000591028 CHD1O14646 1710 aa28.14■■■□□ 2.1
NFIX-213ENST00000591028 AQRO60306 1485 aaKnown RBP eCLIP28.11■■■□□ 2.09
NFIX-213ENST00000591028 ARHGEF11O15085 1522 aa28.06■■■□□ 2.08
NFIX-213ENST00000591028 RAD54L2Q9Y4B4 1467 aa28.05■■■□□ 2.08
NFIX-213ENST00000591028 FGD5Q6ZNL6 1462 aa27.98■■■□□ 2.07
NFIX-213ENST00000591028 CUX1P39880 1505 aa27.97■■■□□ 2.07
NFIX-213ENST00000591028 SOGA1O94964 1423 aa27.94■■■□□ 2.06
NFIX-213ENST00000591028 TDRD9Q8NDG6 1382 aaKnown RBP27.92■■■□□ 2.06
NFIX-213ENST00000591028 FBLN2P98095 1184 aa27.89■■■□□ 2.06
NFIX-213ENST00000591028 SNAPC4Q5SXM2 1469 aa27.88■■■□□ 2.05
NFIX-213ENST00000591028 WDR97A6NE52 1622 aa27.87■■■□□ 2.05
NFIX-213ENST00000591028 ARAP1Q96P48 1450 aa27.8■■■□□ 2.04
NFIX-213ENST00000591028 PBRM1Q86U86 1689 aa27.77■■■□□ 2.04
NFIX-213ENST00000591028 CYB5RLQ6IPT4 315 aa27.76■■■□□ 2.03
NFIX-213ENST00000591028 MAGI1Q96QZ7 1491 aaPredicted RBP27.75■■■□□ 2.03
NFIX-213ENST00000591028 CLASP1Q7Z460 1538 aa27.74■■■□□ 2.03
NFIX-213ENST00000591028 GRIN2BQ13224 1484 aa27.74■■■□□ 2.03
NFIX-213ENST00000591028 SYNJ1O43426 1573 aa27.69■■■□□ 2.02
NFIX-213ENST00000591028 ABCA5Q8WWZ7 1642 aa27.66■■■□□ 2.02
NFIX-213ENST00000591028 SYNJ2O15056 1496 aa27.65■■■□□ 2.02
NFIX-213ENST00000591028 GAPVD1Q14C86 1478 aa27.64■■■□□ 2.02
NFIX-213ENST00000591028 CHMP7Q8WUX9 453 aaPredicted RBP27.64■■■□□ 2.02
NFIX-213ENST00000591028 ABCA10Q8WWZ4 1543 aa27.62■■■□□ 2.01
NFIX-213ENST00000591028 BIVM-ERCC5R4GMW8 1640 aa27.54■■■□□ 2
NFIX-213ENST00000591028 TOP2BQ02880 1626 aa27.51■■□□□ 1.99
NFIX-213ENST00000591028 WRNQ14191 1432 aaPredicted RBP eCLIP27.47■■□□□ 1.99
NFIX-213ENST00000591028 TRHP20396 242 aaPredicted RBP27.46■■□□□ 1.99
NFIX-213ENST00000591028 ADAMTS12P58397 1594 aa27.46■■□□□ 1.99
NFIX-213ENST00000591028 GRIN2AQ12879 1464 aa27.41■■□□□ 1.98
NFIX-213ENST00000591028 CEP170Q5SW79 1584 aa27.37■■□□□ 1.97
NFIX-213ENST00000591028 ERCC6L2Q5T890 1561 aa27.35■■□□□ 1.97
NFIX-213ENST00000591028 NUP160Q12769 1436 aa27.3■■□□□ 1.96
NFIX-213ENST00000591028 ERICH3Q5RHP9 1530 aa27.27■■□□□ 1.96
NFIX-213ENST00000591028 FHAD1B1AJZ9 1412 aa27.27■■□□□ 1.96
NFIX-213ENST00000591028 SHROOM2Q13796 1616 aa27.23■■□□□ 1.95
NFIX-213ENST00000591028 RUSC2Q8N2Y8 1516 aa27.09■■□□□ 1.93
NFIX-213ENST00000591028 PRG4Q92954 1404 aaPredicted RBP27.02■■□□□ 1.92
NFIX-213ENST00000591028 CUL7Q14999 1698 aa26.93■■□□□ 1.9
NFIX-213ENST00000591028 JPH4Q96JJ6 628 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 540.2 ms