RNA–Protein interactions for RNA: ENST00000590619.1

DNMT1-222, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best)

Gene DNMT1, Length 231 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-222ENST00000590619 NISCHQ9Y2I1 1504 aa16.85■□□□□ 0.29
DNMT1-222ENST00000590619 ABCC9O60706 1549 aa16■□□□□ 0.15
DNMT1-222ENST00000590619 DNAJC5BQ9UF47 199 aa15.75■□□□□ 0.11
DNMT1-222ENST00000590619 CCDC180Q9P1Z9 1646 aa15.2■□□□□ 0.02
DNMT1-222ENST00000590619 PABPN1Q86U42 306 aaKnown RBP eCLIP14.94□□□□□ -0.02
DNMT1-222ENST00000590619 RB1CC1Q8TDY2 1594 aa14.85□□□□□ -0.03
DNMT1-222ENST00000590619 DNAJC5Q9H3Z4 198 aa14.85□□□□□ -0.03
DNMT1-222ENST00000590619 DCAF8L2P0C7V8 631 aa14.68□□□□□ -0.06
DNMT1-222ENST00000590619 NACADO15069 1562 aa14.63□□□□□ -0.07
DNMT1-222ENST00000590619 BICRAQ9NZM4 1560 aa14.5□□□□□ -0.09
DNMT1-222ENST00000590619 CECR2Q9BXF3 1484 aa14.46□□□□□ -0.09
DNMT1-222ENST00000590619 UNC13AQ9UPW8 1703 aa14.44□□□□□ -0.1
DNMT1-222ENST00000590619 CC2D2AQ9P2K1 1620 aa14.36□□□□□ -0.11
DNMT1-222ENST00000590619 MYO15BQ96JP2 1530 aa14.24□□□□□ -0.13
DNMT1-222ENST00000590619 EIF4G1Q04637 1599 aaKnown RBP14.17□□□□□ -0.14
DNMT1-222ENST00000590619 SHROOM4Q9ULL8 1493 aa14.14□□□□□ -0.15
DNMT1-222ENST00000590619 CUX2O14529 1486 aa13.98□□□□□ -0.17
DNMT1-222ENST00000590619 SCRIBQ14160 1630 aa13.93□□□□□ -0.18
DNMT1-222ENST00000590619 TRIM41Q8WV44 630 aa13.92□□□□□ -0.18
DNMT1-222ENST00000590619 DCAF1Q9Y4B6 1507 aa13.83□□□□□ -0.2
DNMT1-222ENST00000590619 ERCC6Q03468 1493 aa13.8□□□□□ -0.2
DNMT1-222ENST00000590619 ZCCHC6Q5VYS8 1495 aaKnown RBP13.78□□□□□ -0.2
DNMT1-222ENST00000590619 NCAPD3P42695 1498 aa13.61□□□□□ -0.23
DNMT1-222ENST00000590619 NESP48681 1621 aa13.58□□□□□ -0.24
DNMT1-222ENST00000590619 ATAD2BQ9ULI0 1458 aa13.47□□□□□ -0.25
DNMT1-222ENST00000590619 THOC2Q8NI27 1593 aaKnown RBP13.42□□□□□ -0.26
DNMT1-222ENST00000590619 OSCARQ8IYS5 282 aa13.41□□□□□ -0.26
DNMT1-222ENST00000590619 SMARCA2P51531 1590 aa13.32□□□□□ -0.28
DNMT1-222ENST00000590619 PDS5BQ9NTI5 1447 aa13.32□□□□□ -0.28
DNMT1-222ENST00000590619 HMGXB3Q12766 1538 aa13.32□□□□□ -0.28
DNMT1-222ENST00000590619 LAMC3Q9Y6N6 1575 aa13.28□□□□□ -0.28
DNMT1-222ENST00000590619 BAZ1BQ9UIG0 1483 aaKnown RBP13.24□□□□□ -0.29
DNMT1-222ENST00000590619 KIF21AQ7Z4S6 1674 aa13.23□□□□□ -0.29
DNMT1-222ENST00000590619 AEBP2Q6ZN18 517 aaPredicted RBP13.21□□□□□ -0.29
DNMT1-222ENST00000590619 SMARCA4P51532 1647 aa13.2□□□□□ -0.3
DNMT1-222ENST00000590619 CADPSQ9ULU8 1353 aa13.2□□□□□ -0.3
DNMT1-222ENST00000590619 MRC2Q9UBG0 1479 aa13.19□□□□□ -0.3
DNMT1-222ENST00000590619 BAZ1AQ9NRL2 1556 aaPredicted RBP13.19□□□□□ -0.3
DNMT1-222ENST00000590619 TRHP20396 242 aaPredicted RBP13.17□□□□□ -0.3
DNMT1-222ENST00000590619 WDR62O43379 1518 aa13.15□□□□□ -0.3
DNMT1-222ENST00000590619 CYB5RLQ6IPT4 315 aa13.15□□□□□ -0.3
DNMT1-222ENST00000590619 RIMBP3CA6NJZ7 1639 aa13.11□□□□□ -0.31
DNMT1-222ENST00000590619 RIMBP3BA6NNM3 1639 aa13.11□□□□□ -0.31
DNMT1-222ENST00000590619 RIMBP3Q9UFD9 1639 aa13.11□□□□□ -0.31
DNMT1-222ENST00000590619 PEG3Q9GZU2 1588 aa13.08□□□□□ -0.32
DNMT1-222ENST00000590619 ARHGEF11O15085 1522 aa13.03□□□□□ -0.32
DNMT1-222ENST00000590619 CEP164Q9UPV0 1460 aa13□□□□□ -0.33
DNMT1-222ENST00000590619 MROH2BQ7Z745 1585 aa12.99□□□□□ -0.33
DNMT1-222ENST00000590619 FANCD2Q9BXW9 1451 aa12.98□□□□□ -0.33
DNMT1-222ENST00000590619 URB2Q14146 1524 aaKnown RBP12.91□□□□□ -0.34
DNMT1-222ENST00000590619 ARAP1Q96P48 1450 aa12.89□□□□□ -0.35
DNMT1-222ENST00000590619 ZNF608Q9ULD9 1512 aaPredicted RBP12.88□□□□□ -0.35
DNMT1-222ENST00000590619 CFTRP13569 1480 aa12.87□□□□□ -0.35
DNMT1-222ENST00000590619 FBLN2P98095 1184 aa12.81□□□□□ -0.36
DNMT1-222ENST00000590619 IFT140Q96RY7 1462 aa12.8□□□□□ -0.36
DNMT1-222ENST00000590619 ILDR1Q86SU0 546 aaPredicted RBP12.79□□□□□ -0.36
DNMT1-222ENST00000590619 RSF1Q96T23 1441 aaPredicted RBP12.76□□□□□ -0.37
DNMT1-222ENST00000590619 WIZO95785 1651 aa12.76□□□□□ -0.37
DNMT1-222ENST00000590619 AQRO60306 1485 aaKnown RBP eCLIP12.73□□□□□ -0.374e-9■□□□□ 11.3
DNMT1-222ENST00000590619 TOPBP1Q92547 1522 aa12.65□□□□□ -0.38
DNMT1-222ENST00000590619 CHD1O14646 1710 aa12.64□□□□□ -0.39
DNMT1-222ENST00000590619 EIF4G3O43432 1585 aaKnown RBP12.64□□□□□ -0.39
DNMT1-222ENST00000590619 CHMP7Q8WUX9 453 aaPredicted RBP12.61□□□□□ -0.39
DNMT1-222ENST00000590619 TDRD9Q8NDG6 1382 aaKnown RBP12.58□□□□□ -0.4
DNMT1-222ENST00000590619 ABCC8Q09428 1581 aa12.57□□□□□ -0.4
DNMT1-222ENST00000590619 KDM4FA0A1W2PPD8 638 aa12.56□□□□□ -0.4
DNMT1-222ENST00000590619 CLASP1Q7Z460 1538 aa12.55□□□□□ -0.4
DNMT1-222ENST00000590619 TARBP1Q13395 1621 aaKnown RBP12.55□□□□□ -0.4
DNMT1-222ENST00000590619 GAPVD1Q14C86 1478 aa12.53□□□□□ -0.4
DNMT1-222ENST00000590619 RAD54L2Q9Y4B4 1467 aa12.52□□□□□ -0.41
DNMT1-222ENST00000590619 TOP2AP11388 1531 aaKnown RBP12.52□□□□□ -0.41
DNMT1-222ENST00000590619 SOGA1O94964 1423 aa12.5□□□□□ -0.41
DNMT1-222ENST00000590619 CCDC88BA6NC98 1476 aa12.5□□□□□ -0.41
DNMT1-222ENST00000590619 DNMBPQ6XZF7 1577 aa12.49□□□□□ -0.41
DNMT1-222ENST00000590619 POLA1P09884 1462 aaPredicted RBP12.49□□□□□ -0.41
DNMT1-222ENST00000590619 SNAPC4Q5SXM2 1469 aa12.49□□□□□ -0.41
DNMT1-222ENST00000590619 SYNJ1O43426 1573 aa12.46□□□□□ -0.42
DNMT1-222ENST00000590619 PRDM2Q13029 1718 aa12.43□□□□□ -0.42
DNMT1-222ENST00000590619 MAGI1Q96QZ7 1491 aaPredicted RBP12.41□□□□□ -0.42
DNMT1-222ENST00000590619 SYNJ2O15056 1496 aa12.4□□□□□ -0.42
DNMT1-222ENST00000590619 FAM69CQ0P6D2 419 aa12.4□□□□□ -0.42
DNMT1-222ENST00000590619 GRIN2BQ13224 1484 aa12.39□□□□□ -0.43
DNMT1-222ENST00000590619 ERCC6L2Q5T890 1561 aa12.37□□□□□ -0.43
DNMT1-222ENST00000590619 FGD5Q6ZNL6 1462 aa12.32□□□□□ -0.44
DNMT1-222ENST00000590619 KIF13AQ9H1H9 1805 aa12.3□□□□□ -0.44
DNMT1-222ENST00000590619 WDR97A6NE52 1622 aa12.29□□□□□ -0.44
DNMT1-222ENST00000590619 ABCC10Q5T3U5 1492 aa12.27□□□□□ -0.44
DNMT1-222ENST00000590619 NPM1P06748 294 aaKnown RBP eCLIP12.27□□□□□ -0.45
DNMT1-222ENST00000590619 CEP170Q5SW79 1584 aa12.25□□□□□ -0.45
DNMT1-222ENST00000590619 FBXO41Q8TF61 875 aa12.24□□□□□ -0.45
DNMT1-222ENST00000590619 JPH4Q96JJ6 628 aa12.23□□□□□ -0.45
DNMT1-222ENST00000590619 NUP160Q12769 1436 aa12.22□□□□□ -0.45
DNMT1-222ENST00000590619 CUX1P39880 1505 aa12.21□□□□□ -0.45
DNMT1-222ENST00000590619 GRIN2AQ12879 1464 aa12.21□□□□□ -0.46
DNMT1-222ENST00000590619 PRG4Q92954 1404 aaPredicted RBP12.19□□□□□ -0.46
DNMT1-222ENST00000590619 KDM6BO15054 1643 aa12.19□□□□□ -0.46
DNMT1-222ENST00000590619 ADGRL1O94910 1474 aa12.15□□□□□ -0.46
DNMT1-222ENST00000590619 ABCA10Q8WWZ4 1543 aa12.15□□□□□ -0.46
DNMT1-222ENST00000590619 SHROOM2Q13796 1616 aa12.15□□□□□ -0.47
DNMT1-222ENST00000590619 PBRM1Q86U86 1689 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms