RNA–Protein interactions for RNA: ENST00000590563.1

LSM12-203, Transcript of LSM12 homolog, humanhuman

TSL 2

Gene LSM12, Length 559 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM12-203ENST00000590563 NISCHQ9Y2I1 1504 aa34.94■■■■□ 3.18
LSM12-203ENST00000590563 ABCC9O60706 1549 aa32.64■■■□□ 2.82
LSM12-203ENST00000590563 CCDC180Q9P1Z9 1646 aa31.76■■■□□ 2.67
LSM12-203ENST00000590563 DNAJC5BQ9UF47 199 aa31.49■■■□□ 2.63
LSM12-203ENST00000590563 RB1CC1Q8TDY2 1594 aa30.63■■■□□ 2.49
LSM12-203ENST00000590563 NACADO15069 1562 aa30.21■■■□□ 2.43
LSM12-203ENST00000590563 PABPN1Q86U42 306 aaKnown RBP eCLIP30.19■■■□□ 2.42
LSM12-203ENST00000590563 UNC13AQ9UPW8 1703 aa29.99■■■□□ 2.39
LSM12-203ENST00000590563 BICRAQ9NZM4 1560 aa29.9■■■□□ 2.38
LSM12-203ENST00000590563 DCAF8L2P0C7V8 631 aa29.67■■■□□ 2.34
LSM12-203ENST00000590563 MYO15BQ96JP2 1530 aa29.54■■■□□ 2.32
LSM12-203ENST00000590563 DNAJC5Q9H3Z4 198 aa29.51■■■□□ 2.31
LSM12-203ENST00000590563 CECR2Q9BXF3 1484 aa29.49■■■□□ 2.31
LSM12-203ENST00000590563 CC2D2AQ9P2K1 1620 aa29.45■■■□□ 2.31
LSM12-203ENST00000590563 SHROOM4Q9ULL8 1493 aa29.33■■■□□ 2.29
LSM12-203ENST00000590563 EIF4G1Q04637 1599 aaKnown RBP29.18■■■□□ 2.26
LSM12-203ENST00000590563 SCRIBQ14160 1630 aa28.87■■■□□ 2.21
LSM12-203ENST00000590563 DCAF1Q9Y4B6 1507 aa28.81■■■□□ 2.2
LSM12-203ENST00000590563 ZCCHC6Q5VYS8 1495 aaKnown RBP28.8■■■□□ 2.2
LSM12-203ENST00000590563 CUX2O14529 1486 aa28.52■■■□□ 2.16
LSM12-203ENST00000590563 ERCC6Q03468 1493 aa28.18■■■□□ 2.1
LSM12-203ENST00000590563 NCAPD3P42695 1498 aa27.93■■■□□ 2.06
LSM12-203ENST00000590563 NESP48681 1621 aa27.81■■■□□ 2.04
LSM12-203ENST00000590563 TRIM41Q8WV44 630 aa27.77■■■□□ 2.04
LSM12-203ENST00000590563 THOC2Q8NI27 1593 aaKnown RBP27.77■■■□□ 2.04
LSM12-203ENST00000590563 ATAD2BQ9ULI0 1458 aa27.72■■■□□ 2.03
LSM12-203ENST00000590563 HMGXB3Q12766 1538 aa27.66■■■□□ 2.02
LSM12-203ENST00000590563 SMARCA2P51531 1590 aa27.55■■■□□ 2
LSM12-203ENST00000590563 SMARCA4P51532 1647 aa27.46■■□□□ 1.99
LSM12-203ENST00000590563 LAMC3Q9Y6N6 1575 aa27.43■■□□□ 1.98
LSM12-203ENST00000590563 KIF21AQ7Z4S6 1674 aa27.4■■□□□ 1.98
LSM12-203ENST00000590563 BAZ1BQ9UIG0 1483 aaKnown RBP27.36■■□□□ 1.97
LSM12-203ENST00000590563 PDS5BQ9NTI5 1447 aa27.24■■□□□ 1.95
LSM12-203ENST00000590563 PEG3Q9GZU2 1588 aa27.23■■□□□ 1.95
LSM12-203ENST00000590563 BAZ1AQ9NRL2 1556 aaPredicted RBP27.16■■□□□ 1.94
LSM12-203ENST00000590563 WDR62O43379 1518 aa27.14■■□□□ 1.94
LSM12-203ENST00000590563 MRC2Q9UBG0 1479 aa27.13■■□□□ 1.93
LSM12-203ENST00000590563 CADPSQ9ULU8 1353 aa26.99■■□□□ 1.91
LSM12-203ENST00000590563 MROH2BQ7Z745 1585 aa26.94■■□□□ 1.9
LSM12-203ENST00000590563 OSCARQ8IYS5 282 aa26.94■■□□□ 1.9
LSM12-203ENST00000590563 RIMBP3CA6NJZ7 1639 aa26.83■■□□□ 1.89
LSM12-203ENST00000590563 RIMBP3BA6NNM3 1639 aa26.83■■□□□ 1.89
LSM12-203ENST00000590563 RIMBP3Q9UFD9 1639 aa26.83■■□□□ 1.89
LSM12-203ENST00000590563 CEP164Q9UPV0 1460 aa26.81■■□□□ 1.88
LSM12-203ENST00000590563 FANCD2Q9BXW9 1451 aa26.71■■□□□ 1.87
LSM12-203ENST00000590563 ARHGEF11O15085 1522 aa26.65■■□□□ 1.86
LSM12-203ENST00000590563 URB2Q14146 1524 aaKnown RBP26.6■■□□□ 1.85
LSM12-203ENST00000590563 CFTRP13569 1480 aa26.55■■□□□ 1.84
LSM12-203ENST00000590563 WIZO95785 1651 aa26.54■■□□□ 1.84
LSM12-203ENST00000590563 ZNF608Q9ULD9 1512 aaPredicted RBP26.43■■□□□ 1.82
LSM12-203ENST00000590563 CYB5RLQ6IPT4 315 aa26.39■■□□□ 1.82
LSM12-203ENST00000590563 ARAP1Q96P48 1450 aa26.36■■□□□ 1.81
LSM12-203ENST00000590563 TRHP20396 242 aaPredicted RBP26.34■■□□□ 1.81
LSM12-203ENST00000590563 IFT140Q96RY7 1462 aa26.31■■□□□ 1.8
LSM12-203ENST00000590563 EIF4G3O43432 1585 aaKnown RBP26.23■■□□□ 1.79
LSM12-203ENST00000590563 AEBP2Q6ZN18 517 aaPredicted RBP26.21■■□□□ 1.79
LSM12-203ENST00000590563 CHD1O14646 1710 aa26.17■■□□□ 1.78
LSM12-203ENST00000590563 PRDM2Q13029 1718 aa26.16■■□□□ 1.78
LSM12-203ENST00000590563 TOP2AP11388 1531 aaKnown RBP26.15■■□□□ 1.78
LSM12-203ENST00000590563 RSF1Q96T23 1441 aaPredicted RBP26.14■■□□□ 1.78
LSM12-203ENST00000590563 TOPBP1Q92547 1522 aa26.13■■□□□ 1.77
LSM12-203ENST00000590563 AQRO60306 1485 aaKnown RBP eCLIP26.02■■□□□ 1.763e-6■■■■■ 31
LSM12-203ENST00000590563 TARBP1Q13395 1621 aaKnown RBP25.99■■□□□ 1.75
LSM12-203ENST00000590563 DNMBPQ6XZF7 1577 aa25.95■■□□□ 1.74
LSM12-203ENST00000590563 CLASP1Q7Z460 1538 aa25.92■■□□□ 1.74
LSM12-203ENST00000590563 ABCC8Q09428 1581 aa25.91■■□□□ 1.74
LSM12-203ENST00000590563 FBLN2P98095 1184 aa25.89■■□□□ 1.74
LSM12-203ENST00000590563 CCDC88BA6NC98 1476 aa25.85■■□□□ 1.73
LSM12-203ENST00000590563 POLA1P09884 1462 aaPredicted RBP25.81■■□□□ 1.72
LSM12-203ENST00000590563 SNAPC4Q5SXM2 1469 aa25.75■■□□□ 1.71
LSM12-203ENST00000590563 RAD54L2Q9Y4B4 1467 aa25.72■■□□□ 1.71
LSM12-203ENST00000590563 SYNJ1O43426 1573 aa25.72■■□□□ 1.71
LSM12-203ENST00000590563 TDRD9Q8NDG6 1382 aaKnown RBP25.69■■□□□ 1.7
LSM12-203ENST00000590563 GAPVD1Q14C86 1478 aa25.63■■□□□ 1.69
LSM12-203ENST00000590563 WDR97A6NE52 1622 aa25.62■■□□□ 1.69
LSM12-203ENST00000590563 MAGI1Q96QZ7 1491 aaPredicted RBP25.61■■□□□ 1.69
LSM12-203ENST00000590563 SOGA1O94964 1423 aa25.6■■□□□ 1.69
LSM12-203ENST00000590563 CHMP7Q8WUX9 453 aaPredicted RBP25.57■■□□□ 1.68
LSM12-203ENST00000590563 SYNJ2O15056 1496 aa25.55■■□□□ 1.68
LSM12-203ENST00000590563 GRIN2BQ13224 1484 aa25.51■■□□□ 1.67
LSM12-203ENST00000590563 FGD5Q6ZNL6 1462 aa25.5■■□□□ 1.67
LSM12-203ENST00000590563 ERCC6L2Q5T890 1561 aa25.46■■□□□ 1.67
LSM12-203ENST00000590563 PBRM1Q86U86 1689 aa25.37■■□□□ 1.65
LSM12-203ENST00000590563 CUX1P39880 1505 aa25.37■■□□□ 1.65
LSM12-203ENST00000590563 KIF13AQ9H1H9 1805 aa25.35■■□□□ 1.65
LSM12-203ENST00000590563 ILDR1Q86SU0 546 aaPredicted RBP25.34■■□□□ 1.65
LSM12-203ENST00000590563 CEP170Q5SW79 1584 aa25.27■■□□□ 1.64
LSM12-203ENST00000590563 ABCA5Q8WWZ7 1642 aa25.25■■□□□ 1.63
LSM12-203ENST00000590563 GRIN2AQ12879 1464 aa25.21■■□□□ 1.63
LSM12-203ENST00000590563 SHROOM2Q13796 1616 aa25.2■■□□□ 1.62
LSM12-203ENST00000590563 NUP160Q12769 1436 aa25.2■■□□□ 1.62
LSM12-203ENST00000590563 KDM4FA0A1W2PPD8 638 aa25.18■■□□□ 1.62
LSM12-203ENST00000590563 ABCA10Q8WWZ4 1543 aa25.17■■□□□ 1.62
LSM12-203ENST00000590563 ADAMTS12P58397 1594 aa25.12■■□□□ 1.61
LSM12-203ENST00000590563 ABCC10Q5T3U5 1492 aa25.09■■□□□ 1.61
LSM12-203ENST00000590563 DIP2BQ9P265 1576 aa25.03■■□□□ 1.6
LSM12-203ENST00000590563 FAM69CQ0P6D2 419 aa25.01■■□□□ 1.59
LSM12-203ENST00000590563 KDM6BO15054 1643 aa25.01■■□□□ 1.59
LSM12-203ENST00000590563 MAPKBP1O60336 1514 aa25■■□□□ 1.59
LSM12-203ENST00000590563 PRG4Q92954 1404 aaPredicted RBP24.95■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms