RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 NISCHQ9Y2I1 1504 aa44.27■■■■■ 4.68
RETREG3-210ENST00000590541 ABCC9O60706 1549 aa40.46■■■■■ 4.07
RETREG3-210ENST00000590541 CCDC180Q9P1Z9 1646 aa39.91■■■■□ 3.98
RETREG3-210ENST00000590541 DNAJC5BQ9UF47 199 aa38.47■■■■□ 3.75
RETREG3-210ENST00000590541 RB1CC1Q8TDY2 1594 aa38.25■■■■□ 3.71
RETREG3-210ENST00000590541 NACADO15069 1562 aa37.87■■■■□ 3.65
RETREG3-210ENST00000590541 PABPN1Q86U42 306 aaKnown RBP eCLIP37.6■■■■□ 3.61
RETREG3-210ENST00000590541 DCAF8L2P0C7V8 631 aa37.56■■■■□ 3.6
RETREG3-210ENST00000590541 UNC13AQ9UPW8 1703 aa37.4■■■■□ 3.58
RETREG3-210ENST00000590541 BICRAQ9NZM4 1560 aa37.21■■■■□ 3.55
RETREG3-210ENST00000590541 MYO15BQ96JP2 1530 aa37.2■■■■□ 3.55
RETREG3-210ENST00000590541 SHROOM4Q9ULL8 1493 aa36.61■■■■□ 3.45
RETREG3-210ENST00000590541 ZCCHC6Q5VYS8 1495 aaKnown RBP36.59■■■■□ 3.45
RETREG3-210ENST00000590541 DCAF1Q9Y4B6 1507 aa36.53■■■■□ 3.44
RETREG3-210ENST00000590541 CC2D2AQ9P2K1 1620 aa36.52■■■■□ 3.44
RETREG3-210ENST00000590541 CECR2Q9BXF3 1484 aa36.5■■■■□ 3.43
RETREG3-210ENST00000590541 SCRIBQ14160 1630 aa36.35■■■■□ 3.41
RETREG3-210ENST00000590541 EIF4G1Q04637 1599 aaKnown RBP36.32■■■■□ 3.4
RETREG3-210ENST00000590541 DNAJC5Q9H3Z4 198 aa35.66■■■■□ 3.3
RETREG3-210ENST00000590541 CUX2O14529 1486 aa35.07■■■■□ 3.2
RETREG3-210ENST00000590541 NCAPD3P42695 1498 aa35■■■■□ 3.19
RETREG3-210ENST00000590541 ERCC6Q03468 1493 aa34.93■■■■□ 3.18
RETREG3-210ENST00000590541 ATAD2BQ9ULI0 1458 aa34.82■■■■□ 3.16
RETREG3-210ENST00000590541 HMGXB3Q12766 1538 aa34.67■■■■□ 3.14
RETREG3-210ENST00000590541 SMARCA2P51531 1590 aa34.66■■■■□ 3.14
RETREG3-210ENST00000590541 SMARCA4P51532 1647 aa34.64■■■■□ 3.14
RETREG3-210ENST00000590541 NESP48681 1621 aa34.63■■■■□ 3.13
RETREG3-210ENST00000590541 BAZ1BQ9UIG0 1483 aaKnown RBP34.43■■■■□ 3.1
RETREG3-210ENST00000590541 BAZ1AQ9NRL2 1556 aaPredicted RBP34.37■■■■□ 3.09
RETREG3-210ENST00000590541 THOC2Q8NI27 1593 aaKnown RBP34.36■■■■□ 3.09
RETREG3-210ENST00000590541 PEG3Q9GZU2 1588 aa34.32■■■■□ 3.08
RETREG3-210ENST00000590541 LAMC3Q9Y6N6 1575 aa34.27■■■■□ 3.08
RETREG3-210ENST00000590541 KIF21AQ7Z4S6 1674 aa34.13■■■■□ 3.05
RETREG3-210ENST00000590541 MROH2BQ7Z745 1585 aa34.12■■■■□ 3.05
RETREG3-210ENST00000590541 PDS5BQ9NTI5 1447 aa34.07■■■■□ 3.04
RETREG3-210ENST00000590541 CADPSQ9ULU8 1353 aa33.9■■■■□ 3.02
RETREG3-210ENST00000590541 TRIM41Q8WV44 630 aa33.85■■■■□ 3.01
RETREG3-210ENST00000590541 MRC2Q9UBG0 1479 aa33.83■■■■□ 3.01
RETREG3-210ENST00000590541 WDR62O43379 1518 aa33.78■■■■□ 3
RETREG3-210ENST00000590541 WIZO95785 1651 aa33.67■■■□□ 2.98
RETREG3-210ENST00000590541 CEP164Q9UPV0 1460 aa33.58■■■□□ 2.97
RETREG3-210ENST00000590541 FANCD2Q9BXW9 1451 aa33.51■■■□□ 2.96
RETREG3-210ENST00000590541 CFTRP13569 1480 aa33.42■■■□□ 2.94
RETREG3-210ENST00000590541 OSCARQ8IYS5 282 aa33.38■■■□□ 2.93
RETREG3-210ENST00000590541 URB2Q14146 1524 aaKnown RBP33.29■■■□□ 2.92
RETREG3-210ENST00000590541 RSF1Q96T23 1441 aaPredicted RBP33.23■■■□□ 2.91
RETREG3-210ENST00000590541 TOP2AP11388 1531 aaKnown RBP33.2■■■□□ 2.91
RETREG3-210ENST00000590541 RIMBP3CA6NJZ7 1639 aa33.01■■■□□ 2.87
RETREG3-210ENST00000590541 RIMBP3BA6NNM3 1639 aa33.01■■■□□ 2.87
RETREG3-210ENST00000590541 RIMBP3Q9UFD9 1639 aa33.01■■■□□ 2.87
RETREG3-210ENST00000590541 PRDM2Q13029 1718 aa32.98■■■□□ 2.87
RETREG3-210ENST00000590541 ZNF608Q9ULD9 1512 aaPredicted RBP32.97■■■□□ 2.87
RETREG3-210ENST00000590541 IFT140Q96RY7 1462 aa32.94■■■□□ 2.86
RETREG3-210ENST00000590541 ARHGEF11O15085 1522 aa32.86■■■□□ 2.85
RETREG3-210ENST00000590541 CCDC88BA6NC98 1476 aa32.85■■■□□ 2.85
RETREG3-210ENST00000590541 TOPBP1Q92547 1522 aa32.82■■■□□ 2.85
RETREG3-210ENST00000590541 EIF4G3O43432 1585 aaKnown RBP32.73■■■□□ 2.83
RETREG3-210ENST00000590541 ABCC8Q09428 1581 aa32.69■■■□□ 2.82
RETREG3-210ENST00000590541 DNMBPQ6XZF7 1577 aa32.65■■■□□ 2.82
RETREG3-210ENST00000590541 CYB5RLQ6IPT4 315 aa32.64■■■□□ 2.82
RETREG3-210ENST00000590541 AQRO60306 1485 aaKnown RBP eCLIP32.6■■■□□ 2.81
RETREG3-210ENST00000590541 TARBP1Q13395 1621 aaKnown RBP32.59■■■□□ 2.81
RETREG3-210ENST00000590541 CHD1O14646 1710 aa32.57■■■□□ 2.81
RETREG3-210ENST00000590541 ARAP1Q96P48 1450 aa32.51■■■□□ 2.79
RETREG3-210ENST00000590541 POLA1P09884 1462 aaPredicted RBP32.47■■■□□ 2.79
RETREG3-210ENST00000590541 FBLN2P98095 1184 aa32.44■■■□□ 2.78
RETREG3-210ENST00000590541 TRHP20396 242 aaPredicted RBP32.41■■■□□ 2.78
RETREG3-210ENST00000590541 RAD54L2Q9Y4B4 1467 aa32.36■■■□□ 2.77
RETREG3-210ENST00000590541 TDRD9Q8NDG6 1382 aaKnown RBP32.31■■■□□ 2.76
RETREG3-210ENST00000590541 SOGA1O94964 1423 aa32.29■■■□□ 2.76
RETREG3-210ENST00000590541 SNAPC4Q5SXM2 1469 aa32.23■■■□□ 2.75
RETREG3-210ENST00000590541 CLASP1Q7Z460 1538 aa32.22■■■□□ 2.75
RETREG3-210ENST00000590541 FGD5Q6ZNL6 1462 aa32.18■■■□□ 2.74
RETREG3-210ENST00000590541 WDR97A6NE52 1622 aa32.18■■■□□ 2.74
RETREG3-210ENST00000590541 CHMP7Q8WUX9 453 aaPredicted RBP32.13■■■□□ 2.73
RETREG3-210ENST00000590541 SYNJ1O43426 1573 aa32.11■■■□□ 2.73
RETREG3-210ENST00000590541 MAGI1Q96QZ7 1491 aaPredicted RBP32.11■■■□□ 2.73
RETREG3-210ENST00000590541 CUX1P39880 1505 aa32.08■■■□□ 2.73
RETREG3-210ENST00000590541 GRIN2BQ13224 1484 aa32.07■■■□□ 2.72
RETREG3-210ENST00000590541 SYNJ2O15056 1496 aa32.03■■■□□ 2.72
RETREG3-210ENST00000590541 GAPVD1Q14C86 1478 aa31.9■■■□□ 2.7
RETREG3-210ENST00000590541 PBRM1Q86U86 1689 aa31.89■■■□□ 2.7
RETREG3-210ENST00000590541 AEBP2Q6ZN18 517 aaPredicted RBP31.83■■■□□ 2.69
RETREG3-210ENST00000590541 ABCA10Q8WWZ4 1543 aa31.79■■■□□ 2.68
RETREG3-210ENST00000590541 ABCA5Q8WWZ7 1642 aa31.78■■■□□ 2.68
RETREG3-210ENST00000590541 ERCC6L2Q5T890 1561 aa31.7■■■□□ 2.67
RETREG3-210ENST00000590541 GRIN2AQ12879 1464 aa31.66■■■□□ 2.66
RETREG3-210ENST00000590541 NUP160Q12769 1436 aa31.59■■■□□ 2.65
RETREG3-210ENST00000590541 CEP170Q5SW79 1584 aa31.59■■■□□ 2.65
RETREG3-210ENST00000590541 ADAMTS12P58397 1594 aa31.57■■■□□ 2.64
RETREG3-210ENST00000590541 WRNQ14191 1432 aaPredicted RBP eCLIP31.53■■■□□ 2.64
RETREG3-210ENST00000590541 SHROOM2Q13796 1616 aa31.5■■■□□ 2.63
RETREG3-210ENST00000590541 FHAD1B1AJZ9 1412 aa31.47■■■□□ 2.63
RETREG3-210ENST00000590541 BIVM-ERCC5R4GMW8 1640 aa31.42■■■□□ 2.62
RETREG3-210ENST00000590541 TOP2BQ02880 1626 aa31.41■■■□□ 2.62
RETREG3-210ENST00000590541 ERICH3Q5RHP9 1530 aa31.36■■■□□ 2.61
RETREG3-210ENST00000590541 KIF13AQ9H1H9 1805 aa31.35■■■□□ 2.61
RETREG3-210ENST00000590541 SUPT5HO00267 1087 aaKnown RBP31.33■■■□□ 2.61
RETREG3-210ENST00000590541 PRG4Q92954 1404 aaPredicted RBP31.32■■■□□ 2.6
RETREG3-210ENST00000590541 JPH4Q96JJ6 628 aa31.25■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms