RNA–Protein interactions for RNA: ENST00000590445.5

GCDH-210, Transcript of glutaryl-CoA dehydrogenase, humanhuman

TSL 4

Gene GCDH, Length 496 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCDH-210ENST00000590445 NISCHQ9Y2I1 1504 aa39.19■■■■□ 3.86
GCDH-210ENST00000590445 CCDC180Q9P1Z9 1646 aa34.95■■■■□ 3.19
GCDH-210ENST00000590445 ABCC9O60706 1549 aa34.4■■■■□ 3.1
GCDH-210ENST00000590445 RB1CC1Q8TDY2 1594 aa33.02■■■□□ 2.88
GCDH-210ENST00000590445 NACADO15069 1562 aa32.93■■■□□ 2.86
GCDH-210ENST00000590445 DCAF8L2P0C7V8 631 aa32.84■■■□□ 2.85
GCDH-210ENST00000590445 MYO15BQ96JP2 1530 aa32.67■■■□□ 2.82
GCDH-210ENST00000590445 ZCCHC6Q5VYS8 1495 aaKnown RBP32.6■■■□□ 2.81
GCDH-210ENST00000590445 DCAF1Q9Y4B6 1507 aa32.44■■■□□ 2.78
GCDH-210ENST00000590445 UNC13AQ9UPW8 1703 aa32.2■■■□□ 2.75
GCDH-210ENST00000590445 PABPN1Q86U42 306 aaKnown RBP eCLIP32.11■■■□□ 2.73
GCDH-210ENST00000590445 BICRAQ9NZM4 1560 aa31.98■■■□□ 2.71
GCDH-210ENST00000590445 SCRIBQ14160 1630 aa31.85■■■□□ 2.69
GCDH-210ENST00000590445 DNAJC5BQ9UF47 199 aa31.76■■■□□ 2.67
GCDH-210ENST00000590445 SHROOM4Q9ULL8 1493 aa31.71■■■□□ 2.67
GCDH-210ENST00000590445 EIF4G1Q04637 1599 aaKnown RBP31.18■■■□□ 2.58
GCDH-210ENST00000590445 CC2D2AQ9P2K1 1620 aa31.1■■■□□ 2.57
GCDH-210ENST00000590445 CECR2Q9BXF3 1484 aa30.95■■■□□ 2.55
GCDH-210ENST00000590445 SMARCA4P51532 1647 aa30.45■■■□□ 2.47
GCDH-210ENST00000590445 BAZ1AQ9NRL2 1556 aaPredicted RBP30.41■■■□□ 2.46
GCDH-210ENST00000590445 NCAPD3P42695 1498 aa30.38■■■□□ 2.45
GCDH-210ENST00000590445 ATAD2BQ9ULI0 1458 aa30.36■■■□□ 2.45
GCDH-210ENST00000590445 SMARCA2P51531 1590 aa30.32■■■□□ 2.45
GCDH-210ENST00000590445 HMGXB3Q12766 1538 aa30.22■■■□□ 2.43
GCDH-210ENST00000590445 MROH2BQ7Z745 1585 aa30.18■■■□□ 2.42
GCDH-210ENST00000590445 PEG3Q9GZU2 1588 aa30.17■■■□□ 2.42
GCDH-210ENST00000590445 BAZ1BQ9UIG0 1483 aaKnown RBP30.11■■■□□ 2.41
GCDH-210ENST00000590445 WIZO95785 1651 aa29.83■■■□□ 2.37
GCDH-210ENST00000590445 RSF1Q96T23 1441 aaPredicted RBP29.77■■■□□ 2.36
GCDH-210ENST00000590445 ERCC6Q03468 1493 aa29.7■■■□□ 2.35
GCDH-210ENST00000590445 NESP48681 1621 aa29.68■■■□□ 2.34
GCDH-210ENST00000590445 LAMC3Q9Y6N6 1575 aa29.62■■■□□ 2.33
GCDH-210ENST00000590445 TOP2AP11388 1531 aaKnown RBP29.54■■■□□ 2.32
GCDH-210ENST00000590445 CADPSQ9ULU8 1353 aa29.49■■■□□ 2.31
GCDH-210ENST00000590445 CUX2O14529 1486 aa29.48■■■□□ 2.31
GCDH-210ENST00000590445 PDS5BQ9NTI5 1447 aa29.45■■■□□ 2.3
GCDH-210ENST00000590445 KIF21AQ7Z4S6 1674 aa29.32■■■□□ 2.28
GCDH-210ENST00000590445 THOC2Q8NI27 1593 aaKnown RBP29.29■■■□□ 2.28
GCDH-210ENST00000590445 CFTRP13569 1480 aa29.26■■■□□ 2.27
GCDH-210ENST00000590445 CCDC88BA6NC98 1476 aa29.18■■■□□ 2.26
GCDH-210ENST00000590445 FANCD2Q9BXW9 1451 aa29.14■■■□□ 2.26
GCDH-210ENST00000590445 MRC2Q9UBG0 1479 aa29.14■■■□□ 2.26
GCDH-210ENST00000590445 CEP164Q9UPV0 1460 aa29.14■■■□□ 2.26
GCDH-210ENST00000590445 WDR62O43379 1518 aa29.04■■■□□ 2.24
GCDH-210ENST00000590445 PRDM2Q13029 1718 aa29■■■□□ 2.23
GCDH-210ENST00000590445 URB2Q14146 1524 aaKnown RBP28.84■■■□□ 2.21
GCDH-210ENST00000590445 SUPT5HO00267 1087 aaKnown RBP28.84■■■□□ 2.21
GCDH-210ENST00000590445 DNAJC5Q9H3Z4 198 aa28.83■■■□□ 2.21
GCDH-210ENST00000590445 ABCC8Q09428 1581 aa28.68■■■□□ 2.18
GCDH-210ENST00000590445 TOPBP1Q92547 1522 aa28.65■■■□□ 2.18
GCDH-210ENST00000590445 DNMBPQ6XZF7 1577 aa28.6■■■□□ 2.17
GCDH-210ENST00000590445 IFT140Q96RY7 1462 aa28.55■■■□□ 2.16
GCDH-210ENST00000590445 ZNF608Q9ULD9 1512 aaPredicted RBP28.39■■■□□ 2.14
GCDH-210ENST00000590445 POLA1P09884 1462 aaPredicted RBP28.38■■■□□ 2.13
GCDH-210ENST00000590445 CUX1P39880 1505 aa28.33■■■□□ 2.13
GCDH-210ENST00000590445 TARBP1Q13395 1621 aaKnown RBP28.33■■■□□ 2.13
GCDH-210ENST00000590445 FGD5Q6ZNL6 1462 aa28.28■■■□□ 2.12
GCDH-210ENST00000590445 SOGA1O94964 1423 aa28.28■■■□□ 2.12
GCDH-210ENST00000590445 EIF4G3O43432 1585 aaKnown RBP28.28■■■□□ 2.12
GCDH-210ENST00000590445 RAD54L2Q9Y4B4 1467 aa28.25■■■□□ 2.11
GCDH-210ENST00000590445 OSCARQ8IYS5 282 aa28.22■■■□□ 2.11
GCDH-210ENST00000590445 AQRO60306 1485 aaKnown RBP eCLIP28.21■■■□□ 2.11
GCDH-210ENST00000590445 WDR97A6NE52 1622 aa28.14■■■□□ 2.1
GCDH-210ENST00000590445 TDRD9Q8NDG6 1382 aaKnown RBP28.13■■■□□ 2.09
GCDH-210ENST00000590445 WRNQ14191 1432 aaPredicted RBP eCLIP28.09■■■□□ 2.09
GCDH-210ENST00000590445 TOP2BQ02880 1626 aa28.04■■■□□ 2.08
GCDH-210ENST00000590445 BIVM-ERCC5R4GMW8 1640 aa28.03■■■□□ 2.08
GCDH-210ENST00000590445 ABCA10Q8WWZ4 1543 aa28.02■■■□□ 2.08
GCDH-210ENST00000590445 SYNJ1O43426 1573 aa28■■■□□ 2.07
GCDH-210ENST00000590445 GRIN2BQ13224 1484 aa27.98■■■□□ 2.07
GCDH-210ENST00000590445 SNAPC4Q5SXM2 1469 aa27.95■■■□□ 2.07
GCDH-210ENST00000590445 CHD1O14646 1710 aa27.95■■■□□ 2.07
GCDH-210ENST00000590445 GAPVD1Q14C86 1478 aa27.95■■■□□ 2.06
GCDH-210ENST00000590445 FBLN2P98095 1184 aa27.94■■■□□ 2.06
GCDH-210ENST00000590445 MAGI1Q96QZ7 1491 aaPredicted RBP27.94■■■□□ 2.06
GCDH-210ENST00000590445 ABCA5Q8WWZ7 1642 aa27.9■■■□□ 2.06
GCDH-210ENST00000590445 PBRM1Q86U86 1689 aa27.87■■■□□ 2.05
GCDH-210ENST00000590445 CHMP7Q8WUX9 453 aaPredicted RBP27.85■■■□□ 2.05
GCDH-210ENST00000590445 SYNJ2O15056 1496 aa27.83■■■□□ 2.04
GCDH-210ENST00000590445 TRIM41Q8WV44 630 aa27.77■■■□□ 2.04
GCDH-210ENST00000590445 RIMBP3CA6NJZ7 1639 aa27.74■■■□□ 2.03
GCDH-210ENST00000590445 RIMBP3BA6NNM3 1639 aa27.74■■■□□ 2.03
GCDH-210ENST00000590445 RIMBP3Q9UFD9 1639 aa27.74■■■□□ 2.03
GCDH-210ENST00000590445 ARHGEF11O15085 1522 aa27.72■■■□□ 2.03
GCDH-210ENST00000590445 ERICH3Q5RHP9 1530 aa27.68■■■□□ 2.02
GCDH-210ENST00000590445 CLASP1Q7Z460 1538 aa27.67■■■□□ 2.02
GCDH-210ENST00000590445 ADAMTS12P58397 1594 aa27.65■■■□□ 2.02
GCDH-210ENST00000590445 FHAD1B1AJZ9 1412 aa27.63■■■□□ 2.01
GCDH-210ENST00000590445 GRIN2AQ12879 1464 aa27.61■■■□□ 2.01
GCDH-210ENST00000590445 KIF27Q86VH2 1401 aa27.54■■■□□ 2
GCDH-210ENST00000590445 NUP160Q12769 1436 aa27.5■■□□□ 1.99
GCDH-210ENST00000590445 CYB5RLQ6IPT4 315 aa27.5■■□□□ 1.99
GCDH-210ENST00000590445 ARAP1Q96P48 1450 aa27.48■■□□□ 1.99
GCDH-210ENST00000590445 CEP170Q5SW79 1584 aa27.46■■□□□ 1.99
GCDH-210ENST00000590445 IGF1RP08069 1367 aa27.44■■□□□ 1.98
GCDH-210ENST00000590445 CUL7Q14999 1698 aa27.38■■□□□ 1.97
GCDH-210ENST00000590445 SHROOM2Q13796 1616 aa27.3■■□□□ 1.96
GCDH-210ENST00000590445 CARMIL1Q5VZK9 1371 aa27.28■■□□□ 1.96
GCDH-210ENST00000590445 RUSC2Q8N2Y8 1516 aa27.25■■□□□ 1.95
GCDH-210ENST00000590445 ERCC6L2Q5T890 1561 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms