RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 NISCHQ9Y2I1 1504 aa25.93■■□□□ 1.74
LIG3-212ENST00000590181 ABCC9O60706 1549 aa23.69■■□□□ 1.38
LIG3-212ENST00000590181 CCDC180Q9P1Z9 1646 aa23.57■■□□□ 1.36
LIG3-212ENST00000590181 RB1CC1Q8TDY2 1594 aa22.49■■□□□ 1.19
LIG3-212ENST00000590181 DNAJC5BQ9UF47 199 aa22.29■■□□□ 1.16
LIG3-212ENST00000590181 NACADO15069 1562 aa22.22■■□□□ 1.15
LIG3-212ENST00000590181 UNC13AQ9UPW8 1703 aa22.1■■□□□ 1.13
LIG3-212ENST00000590181 PABPN1Q86U42 306 aaKnown RBP eCLIP21.88■■□□□ 1.09
LIG3-212ENST00000590181 BICRAQ9NZM4 1560 aa21.83■■□□□ 1.09
LIG3-212ENST00000590181 DCAF8L2P0C7V8 631 aa21.83■■□□□ 1.09
LIG3-212ENST00000590181 MYO15BQ96JP2 1530 aa21.8■■□□□ 1.08
LIG3-212ENST00000590181 SHROOM4Q9ULL8 1493 aa21.52■■□□□ 1.04
LIG3-212ENST00000590181 ZCCHC6Q5VYS8 1495 aaKnown RBP21.49■■□□□ 1.03
LIG3-212ENST00000590181 CC2D2AQ9P2K1 1620 aa21.44■■□□□ 1.02
LIG3-212ENST00000590181 DCAF1Q9Y4B6 1507 aa21.43■■□□□ 1.02
LIG3-212ENST00000590181 SCRIBQ14160 1630 aa21.42■■□□□ 1.02
LIG3-212ENST00000590181 CECR2Q9BXF3 1484 aa21.36■■□□□ 1.01
LIG3-212ENST00000590181 EIF4G1Q04637 1599 aaKnown RBP21.32■■□□□ 1
LIG3-212ENST00000590181 DNAJC5Q9H3Z4 198 aa20.68■□□□□ 0.9
LIG3-212ENST00000590181 CUX2O14529 1486 aa20.56■□□□□ 0.88
LIG3-212ENST00000590181 ERCC6Q03468 1493 aa20.49■□□□□ 0.87
LIG3-212ENST00000590181 NCAPD3P42695 1498 aa20.43■□□□□ 0.86
LIG3-212ENST00000590181 SMARCA4P51532 1647 aa20.39■□□□□ 0.86
LIG3-212ENST00000590181 HMGXB3Q12766 1538 aa20.39■□□□□ 0.85
LIG3-212ENST00000590181 ATAD2BQ9ULI0 1458 aa20.37■□□□□ 0.85
LIG3-212ENST00000590181 SMARCA2P51531 1590 aa20.36■□□□□ 0.85
LIG3-212ENST00000590181 NESP48681 1621 aa20.27■□□□□ 0.83
LIG3-212ENST00000590181 THOC2Q8NI27 1593 aaKnown RBP20.25■□□□□ 0.83
LIG3-212ENST00000590181 BAZ1BQ9UIG0 1483 aaKnown RBP20.21■□□□□ 0.83
LIG3-212ENST00000590181 BAZ1AQ9NRL2 1556 aaPredicted RBP20.21■□□□□ 0.83
LIG3-212ENST00000590181 PEG3Q9GZU2 1588 aa20.16■□□□□ 0.82
LIG3-212ENST00000590181 KIF21AQ7Z4S6 1674 aa20.15■□□□□ 0.82
LIG3-212ENST00000590181 LAMC3Q9Y6N6 1575 aa20.13■□□□□ 0.81
LIG3-212ENST00000590181 MROH2BQ7Z745 1585 aa19.99■□□□□ 0.79
LIG3-212ENST00000590181 PDS5BQ9NTI5 1447 aa19.93■□□□□ 0.78
LIG3-212ENST00000590181 MRC2Q9UBG0 1479 aa19.86■□□□□ 0.77
LIG3-212ENST00000590181 WDR62O43379 1518 aa19.85■□□□□ 0.77
LIG3-212ENST00000590181 WIZO95785 1651 aa19.8■□□□□ 0.76
LIG3-212ENST00000590181 CADPSQ9ULU8 1353 aa19.78■□□□□ 0.76
LIG3-212ENST00000590181 TRIM41Q8WV44 630 aa19.72■□□□□ 0.75
LIG3-212ENST00000590181 CEP164Q9UPV0 1460 aa19.72■□□□□ 0.75
LIG3-212ENST00000590181 FANCD2Q9BXW9 1451 aa19.63■□□□□ 0.73
LIG3-212ENST00000590181 PRDM2Q13029 1718 aa19.59■□□□□ 0.73
LIG3-212ENST00000590181 CFTRP13569 1480 aa19.54■□□□□ 0.72
LIG3-212ENST00000590181 TOP2AP11388 1531 aaKnown RBP19.53■□□□□ 0.72
LIG3-212ENST00000590181 URB2Q14146 1524 aaKnown RBP19.51■□□□□ 0.71
LIG3-212ENST00000590181 RSF1Q96T23 1441 aaPredicted RBP19.43■□□□□ 0.7
LIG3-212ENST00000590181 RIMBP3CA6NJZ7 1639 aa19.4■□□□□ 0.7
LIG3-212ENST00000590181 RIMBP3BA6NNM3 1639 aa19.4■□□□□ 0.7
LIG3-212ENST00000590181 RIMBP3Q9UFD9 1639 aa19.4■□□□□ 0.7
LIG3-212ENST00000590181 OSCARQ8IYS5 282 aa19.38■□□□□ 0.69
LIG3-212ENST00000590181 EIF4G3O43432 1585 aaKnown RBP19.31■□□□□ 0.68
LIG3-212ENST00000590181 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
LIG3-212ENST00000590181 IFT140Q96RY7 1462 aa19.29■□□□□ 0.68
LIG3-212ENST00000590181 ARHGEF11O15085 1522 aa19.27■□□□□ 0.68
LIG3-212ENST00000590181 CHD1O14646 1710 aa19.25■□□□□ 0.67
LIG3-212ENST00000590181 TOPBP1Q92547 1522 aa19.25■□□□□ 0.67
LIG3-212ENST00000590181 DNMBPQ6XZF7 1577 aa19.21■□□□□ 0.67
LIG3-212ENST00000590181 CCDC88BA6NC98 1476 aa19.21■□□□□ 0.67
LIG3-212ENST00000590181 TARBP1Q13395 1621 aaKnown RBP19.15■□□□□ 0.66
LIG3-212ENST00000590181 ABCC8Q09428 1581 aa19.14■□□□□ 0.65
LIG3-212ENST00000590181 ARAP1Q96P48 1450 aa19.05■□□□□ 0.64
LIG3-212ENST00000590181 AQRO60306 1485 aaKnown RBP eCLIP19.03■□□□□ 0.64
LIG3-212ENST00000590181 POLA1P09884 1462 aaPredicted RBP19.03■□□□□ 0.64
LIG3-212ENST00000590181 WDR97A6NE52 1622 aa18.97■□□□□ 0.63
LIG3-212ENST00000590181 CYB5RLQ6IPT4 315 aa18.96■□□□□ 0.63
LIG3-212ENST00000590181 CLASP1Q7Z460 1538 aa18.94■□□□□ 0.62
LIG3-212ENST00000590181 RAD54L2Q9Y4B4 1467 aa18.92■□□□□ 0.62
LIG3-212ENST00000590181 SNAPC4Q5SXM2 1469 aa18.91■□□□□ 0.62
LIG3-212ENST00000590181 FBLN2P98095 1184 aa18.9■□□□□ 0.62
LIG3-212ENST00000590181 SYNJ1O43426 1573 aa18.89■□□□□ 0.62
LIG3-212ENST00000590181 FGD5Q6ZNL6 1462 aa18.88■□□□□ 0.61
LIG3-212ENST00000590181 PBRM1Q86U86 1689 aa18.88■□□□□ 0.61
LIG3-212ENST00000590181 TRHP20396 242 aaPredicted RBP18.87■□□□□ 0.61
LIG3-212ENST00000590181 MAGI1Q96QZ7 1491 aaPredicted RBP18.84■□□□□ 0.61
LIG3-212ENST00000590181 SOGA1O94964 1423 aa18.84■□□□□ 0.61
LIG3-212ENST00000590181 TDRD9Q8NDG6 1382 aaKnown RBP18.83■□□□□ 0.61
LIG3-212ENST00000590181 CUX1P39880 1505 aa18.82■□□□□ 0.6
LIG3-212ENST00000590181 GRIN2BQ13224 1484 aa18.78■□□□□ 0.6
LIG3-212ENST00000590181 SYNJ2O15056 1496 aa18.77■□□□□ 0.6
LIG3-212ENST00000590181 ABCA5Q8WWZ7 1642 aa18.74■□□□□ 0.59
LIG3-212ENST00000590181 SUPT5HO00267 1087 aaKnown RBP18.72■□□□□ 0.59
LIG3-212ENST00000590181 CHMP7Q8WUX9 453 aaPredicted RBP18.7■□□□□ 0.58
LIG3-212ENST00000590181 GAPVD1Q14C86 1478 aa18.68■□□□□ 0.58
LIG3-212ENST00000590181 ABCA10Q8WWZ4 1543 aa18.63■□□□□ 0.57
LIG3-212ENST00000590181 ADAMTS12P58397 1594 aa18.63■□□□□ 0.57
LIG3-212ENST00000590181 ERCC6L2Q5T890 1561 aa18.59■□□□□ 0.57
LIG3-212ENST00000590181 GRIN2AQ12879 1464 aa18.57■□□□□ 0.56
LIG3-212ENST00000590181 CEP170Q5SW79 1584 aa18.56■□□□□ 0.56
LIG3-212ENST00000590181 SHROOM2Q13796 1616 aa18.54■□□□□ 0.56
LIG3-212ENST00000590181 AEBP2Q6ZN18 517 aaPredicted RBP18.54■□□□□ 0.56
LIG3-212ENST00000590181 BIVM-ERCC5R4GMW8 1640 aa18.53■□□□□ 0.56
LIG3-212ENST00000590181 NUP160Q12769 1436 aa18.49■□□□□ 0.55
LIG3-212ENST00000590181 KIF13AQ9H1H9 1805 aa18.49■□□□□ 0.55
LIG3-212ENST00000590181 TOP2BQ02880 1626 aa18.48■□□□□ 0.55
LIG3-212ENST00000590181 WRNQ14191 1432 aaPredicted RBP eCLIP18.45■□□□□ 0.54
LIG3-212ENST00000590181 ERICH3Q5RHP9 1530 aa18.42■□□□□ 0.54
LIG3-212ENST00000590181 FHAD1B1AJZ9 1412 aa18.41■□□□□ 0.54
LIG3-212ENST00000590181 RUSC2Q8N2Y8 1516 aa18.39■□□□□ 0.53
LIG3-212ENST00000590181 PRG4Q92954 1404 aaPredicted RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms