RNA–Protein interactions for RNA: ENST00000589949.1

H3F3B-209, Transcript of H3 histone family member 3B, humanhuman

TSL 2

Gene H3F3B, Length 842 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3B-209ENST00000589949 NISCHQ9Y2I1 1504 aa45.1■■■■■ 4.81
H3F3B-209ENST00000589949 CCDC180Q9P1Z9 1646 aa40.31■■■■■ 4.04
H3F3B-209ENST00000589949 ABCC9O60706 1549 aa40.26■■■■■ 4.03
H3F3B-209ENST00000589949 RB1CC1Q8TDY2 1594 aa38.29■■■■□ 3.72
H3F3B-209ENST00000589949 NACADO15069 1562 aa38.08■■■■□ 3.69
H3F3B-209ENST00000589949 DCAF8L2P0C7V8 631 aa37.99■■■■□ 3.67
H3F3B-209ENST00000589949 DNAJC5BQ9UF47 199 aa37.74■■■■□ 3.63
H3F3B-209ENST00000589949 MYO15BQ96JP2 1530 aa37.61■■■■□ 3.61
H3F3B-209ENST00000589949 PABPN1Q86U42 306 aaKnown RBP eCLIP37.55■■■■□ 3.6
H3F3B-209ENST00000589949 UNC13AQ9UPW8 1703 aa37.5■■■■□ 3.59
H3F3B-209ENST00000589949 ZCCHC6Q5VYS8 1495 aaKnown RBP37.41■■■■□ 3.58
H3F3B-209ENST00000589949 BICRAQ9NZM4 1560 aa37.29■■■■□ 3.56
H3F3B-209ENST00000589949 DCAF1Q9Y4B6 1507 aa37.21■■■■□ 3.55
H3F3B-209ENST00000589949 SCRIBQ14160 1630 aa36.82■■■■□ 3.49
H3F3B-209ENST00000589949 SHROOM4Q9ULL8 1493 aa36.65■■■■□ 3.46
H3F3B-209ENST00000589949 CC2D2AQ9P2K1 1620 aa36.34■■■■□ 3.41
H3F3B-209ENST00000589949 EIF4G1Q04637 1599 aaKnown RBP36.31■■■■□ 3.4
H3F3B-209ENST00000589949 CECR2Q9BXF3 1484 aa36.21■■■■□ 3.39
H3F3B-209ENST00000589949 NCAPD3P42695 1498 aa35.22■■■■□ 3.23
H3F3B-209ENST00000589949 ATAD2BQ9ULI0 1458 aa35.15■■■■□ 3.22
H3F3B-209ENST00000589949 SMARCA4P51532 1647 aa35.13■■■■□ 3.21
H3F3B-209ENST00000589949 SMARCA2P51531 1590 aa34.97■■■■□ 3.19
H3F3B-209ENST00000589949 BAZ1AQ9NRL2 1556 aaPredicted RBP34.94■■■■□ 3.18
H3F3B-209ENST00000589949 HMGXB3Q12766 1538 aa34.92■■■■□ 3.18
H3F3B-209ENST00000589949 MROH2BQ7Z745 1585 aa34.8■■■■□ 3.16
H3F3B-209ENST00000589949 PEG3Q9GZU2 1588 aa34.78■■■■□ 3.16
H3F3B-209ENST00000589949 BAZ1BQ9UIG0 1483 aaKnown RBP34.77■■■■□ 3.16
H3F3B-209ENST00000589949 NESP48681 1621 aa34.67■■■■□ 3.14
H3F3B-209ENST00000589949 ERCC6Q03468 1493 aa34.65■■■■□ 3.14
H3F3B-209ENST00000589949 CUX2O14529 1486 aa34.53■■■■□ 3.12
H3F3B-209ENST00000589949 DNAJC5Q9H3Z4 198 aa34.4■■■■□ 3.1
H3F3B-209ENST00000589949 WIZO95785 1651 aa34.37■■■■□ 3.09
H3F3B-209ENST00000589949 LAMC3Q9Y6N6 1575 aa34.33■■■■□ 3.09
H3F3B-209ENST00000589949 THOC2Q8NI27 1593 aaKnown RBP34.22■■■■□ 3.07
H3F3B-209ENST00000589949 KIF21AQ7Z4S6 1674 aa34.15■■■■□ 3.06
H3F3B-209ENST00000589949 CADPSQ9ULU8 1353 aa34.15■■■■□ 3.06
H3F3B-209ENST00000589949 RSF1Q96T23 1441 aaPredicted RBP34.14■■■■□ 3.06
H3F3B-209ENST00000589949 PDS5BQ9NTI5 1447 aa34.13■■■■□ 3.05
H3F3B-209ENST00000589949 TOP2AP11388 1531 aaKnown RBP33.9■■■■□ 3.02
H3F3B-209ENST00000589949 MRC2Q9UBG0 1479 aa33.85■■■■□ 3.01
H3F3B-209ENST00000589949 CFTRP13569 1480 aa33.8■■■■□ 3
H3F3B-209ENST00000589949 WDR62O43379 1518 aa33.78■■■■□ 3
H3F3B-209ENST00000589949 FANCD2Q9BXW9 1451 aa33.76■■■■□ 3
H3F3B-209ENST00000589949 CEP164Q9UPV0 1460 aa33.74■■■□□ 2.99
H3F3B-209ENST00000589949 CCDC88BA6NC98 1476 aa33.57■■■□□ 2.97
H3F3B-209ENST00000589949 URB2Q14146 1524 aaKnown RBP33.52■■■□□ 2.96
H3F3B-209ENST00000589949 PRDM2Q13029 1718 aa33.38■■■□□ 2.93
H3F3B-209ENST00000589949 TOPBP1Q92547 1522 aa33.15■■■□□ 2.9
H3F3B-209ENST00000589949 ZNF608Q9ULD9 1512 aaPredicted RBP33.09■■■□□ 2.89
H3F3B-209ENST00000589949 IFT140Q96RY7 1462 aa33.06■■■□□ 2.88
H3F3B-209ENST00000589949 OSCARQ8IYS5 282 aa33.02■■■□□ 2.88
H3F3B-209ENST00000589949 DNMBPQ6XZF7 1577 aa33■■■□□ 2.87
H3F3B-209ENST00000589949 ABCC8Q09428 1581 aa32.99■■■□□ 2.87
H3F3B-209ENST00000589949 TRIM41Q8WV44 630 aa32.96■■■□□ 2.87
H3F3B-209ENST00000589949 TARBP1Q13395 1621 aaKnown RBP32.85■■■□□ 2.85
H3F3B-209ENST00000589949 EIF4G3O43432 1585 aaKnown RBP32.84■■■□□ 2.85
H3F3B-209ENST00000589949 POLA1P09884 1462 aaPredicted RBP32.82■■■□□ 2.84
H3F3B-209ENST00000589949 AQRO60306 1485 aaKnown RBP eCLIP32.8■■■□□ 2.842e-9■■■■□ 20.2
H3F3B-209ENST00000589949 RAD54L2Q9Y4B4 1467 aa32.74■■■□□ 2.83
H3F3B-209ENST00000589949 SUPT5HO00267 1087 aaKnown RBP32.74■■■□□ 2.83
H3F3B-209ENST00000589949 CUX1P39880 1505 aa32.67■■■□□ 2.82
H3F3B-209ENST00000589949 SOGA1O94964 1423 aa32.67■■■□□ 2.82
H3F3B-209ENST00000589949 FGD5Q6ZNL6 1462 aa32.64■■■□□ 2.82
H3F3B-209ENST00000589949 TDRD9Q8NDG6 1382 aaKnown RBP32.63■■■□□ 2.81
H3F3B-209ENST00000589949 RIMBP3CA6NJZ7 1639 aa32.59■■■□□ 2.81
H3F3B-209ENST00000589949 RIMBP3BA6NNM3 1639 aa32.59■■■□□ 2.81
H3F3B-209ENST00000589949 RIMBP3Q9UFD9 1639 aa32.59■■■□□ 2.81
H3F3B-209ENST00000589949 CHD1O14646 1710 aa32.56■■■□□ 2.8
H3F3B-209ENST00000589949 ARHGEF11O15085 1522 aa32.51■■■□□ 2.8
H3F3B-209ENST00000589949 FBLN2P98095 1184 aa32.49■■■□□ 2.79
H3F3B-209ENST00000589949 SNAPC4Q5SXM2 1469 aa32.43■■■□□ 2.78
H3F3B-209ENST00000589949 WDR97A6NE52 1622 aa32.4■■■□□ 2.78
H3F3B-209ENST00000589949 GRIN2BQ13224 1484 aa32.34■■■□□ 2.77
H3F3B-209ENST00000589949 MAGI1Q96QZ7 1491 aaPredicted RBP32.3■■■□□ 2.76
H3F3B-209ENST00000589949 CYB5RLQ6IPT4 315 aa32.28■■■□□ 2.76
H3F3B-209ENST00000589949 ABCA10Q8WWZ4 1543 aa32.27■■■□□ 2.76
H3F3B-209ENST00000589949 CHMP7Q8WUX9 453 aaPredicted RBP32.26■■■□□ 2.75
H3F3B-209ENST00000589949 GAPVD1Q14C86 1478 aa32.26■■■□□ 2.75
H3F3B-209ENST00000589949 ARAP1Q96P48 1450 aa32.23■■■□□ 2.75
H3F3B-209ENST00000589949 CLASP1Q7Z460 1538 aa32.23■■■□□ 2.75
H3F3B-209ENST00000589949 ABCA5Q8WWZ7 1642 aa32.21■■■□□ 2.75
H3F3B-209ENST00000589949 SYNJ2O15056 1496 aa32.21■■■□□ 2.75
H3F3B-209ENST00000589949 PBRM1Q86U86 1689 aa32.21■■■□□ 2.75
H3F3B-209ENST00000589949 SYNJ1O43426 1573 aa32.15■■■□□ 2.74
H3F3B-209ENST00000589949 WRNQ14191 1432 aaPredicted RBP eCLIP32.15■■■□□ 2.747e-8■□□□□ 11.3
H3F3B-209ENST00000589949 TOP2BQ02880 1626 aa32.14■■■□□ 2.74
H3F3B-209ENST00000589949 BIVM-ERCC5R4GMW8 1640 aa32.13■■■□□ 2.73
H3F3B-209ENST00000589949 ADAMTS12P58397 1594 aa31.94■■■□□ 2.7
H3F3B-209ENST00000589949 GRIN2AQ12879 1464 aa31.94■■■□□ 2.7
H3F3B-209ENST00000589949 CEP170Q5SW79 1584 aa31.85■■■□□ 2.69
H3F3B-209ENST00000589949 FHAD1B1AJZ9 1412 aa31.85■■■□□ 2.69
H3F3B-209ENST00000589949 NUP160Q12769 1436 aa31.84■■■□□ 2.69
H3F3B-209ENST00000589949 ERICH3Q5RHP9 1530 aa31.83■■■□□ 2.69
H3F3B-209ENST00000589949 TRHP20396 242 aaPredicted RBP31.81■■■□□ 2.68
H3F3B-209ENST00000589949 ERCC6L2Q5T890 1561 aa31.81■■■□□ 2.68
H3F3B-209ENST00000589949 SHROOM2Q13796 1616 aa31.67■■■□□ 2.66
H3F3B-209ENST00000589949 IGF1RP08069 1367 aa31.56■■■□□ 2.64
H3F3B-209ENST00000589949 PRG4Q92954 1404 aaPredicted RBP31.52■■■□□ 2.64
H3F3B-209ENST00000589949 JPH4Q96JJ6 628 aa31.52■■■□□ 2.64
H3F3B-209ENST00000589949 KIF27Q86VH2 1401 aa31.49■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms