RNA–Protein interactions for RNA: ENST00000589897.1

TPM4-211, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-211ENST00000589897 NISCHQ9Y2I1 1504 aa20.3■□□□□ 0.84
TPM4-211ENST00000589897 ABCC9O60706 1549 aa18.73■□□□□ 0.59
TPM4-211ENST00000589897 DNAJC5BQ9UF47 199 aa18.17■□□□□ 0.5
TPM4-211ENST00000589897 CCDC180Q9P1Z9 1646 aa18.16■□□□□ 0.5
TPM4-211ENST00000589897 RB1CC1Q8TDY2 1594 aa17.56■□□□□ 0.4
TPM4-211ENST00000589897 PABPN1Q86U42 306 aaKnown RBP eCLIP17.47■□□□□ 0.39
TPM4-211ENST00000589897 DCAF8L2P0C7V8 631 aa17.34■□□□□ 0.37
TPM4-211ENST00000589897 NACADO15069 1562 aa17.33■□□□□ 0.37
TPM4-211ENST00000589897 DNAJC5Q9H3Z4 198 aa17.21■□□□□ 0.35
TPM4-211ENST00000589897 CECR2Q9BXF3 1484 aa16.98■□□□□ 0.31
TPM4-211ENST00000589897 BICRAQ9NZM4 1560 aa16.96■□□□□ 0.31
TPM4-211ENST00000589897 MYO15BQ96JP2 1530 aa16.94■□□□□ 0.3
TPM4-211ENST00000589897 UNC13AQ9UPW8 1703 aa16.86■□□□□ 0.29
TPM4-211ENST00000589897 ZCCHC6Q5VYS8 1495 aaKnown RBP16.84■□□□□ 0.29
TPM4-211ENST00000589897 SHROOM4Q9ULL8 1493 aa16.83■□□□□ 0.28
TPM4-211ENST00000589897 CC2D2AQ9P2K1 1620 aa16.81■□□□□ 0.28
TPM4-211ENST00000589897 DCAF1Q9Y4B6 1507 aa16.75■□□□□ 0.27
TPM4-211ENST00000589897 EIF4G1Q04637 1599 aaKnown RBP16.65■□□□□ 0.26
TPM4-211ENST00000589897 SCRIBQ14160 1630 aa16.58■□□□□ 0.24
TPM4-211ENST00000589897 CUX2O14529 1486 aa16.43■□□□□ 0.22
TPM4-211ENST00000589897 ERCC6Q03468 1493 aa16.29■□□□□ 0.2
TPM4-211ENST00000589897 TRIM41Q8WV44 630 aa16.18■□□□□ 0.18
TPM4-211ENST00000589897 NCAPD3P42695 1498 aa16.08■□□□□ 0.16
TPM4-211ENST00000589897 ATAD2BQ9ULI0 1458 aa15.9■□□□□ 0.14
TPM4-211ENST00000589897 NESP48681 1621 aa15.87■□□□□ 0.13
TPM4-211ENST00000589897 SMARCA4P51532 1647 aa15.8■□□□□ 0.12
TPM4-211ENST00000589897 SMARCA2P51531 1590 aa15.8■□□□□ 0.12
TPM4-211ENST00000589897 PDS5BQ9NTI5 1447 aa15.78■□□□□ 0.12
TPM4-211ENST00000589897 BAZ1AQ9NRL2 1556 aaPredicted RBP15.78■□□□□ 0.12
TPM4-211ENST00000589897 HMGXB3Q12766 1538 aa15.78■□□□□ 0.12
TPM4-211ENST00000589897 OSCARQ8IYS5 282 aa15.77■□□□□ 0.12
TPM4-211ENST00000589897 THOC2Q8NI27 1593 aaKnown RBP15.72■□□□□ 0.11
TPM4-211ENST00000589897 BAZ1BQ9UIG0 1483 aaKnown RBP15.7■□□□□ 0.1
TPM4-211ENST00000589897 LAMC3Q9Y6N6 1575 aa15.7■□□□□ 0.1
TPM4-211ENST00000589897 MROH2BQ7Z745 1585 aa15.63■□□□□ 0.09
TPM4-211ENST00000589897 PEG3Q9GZU2 1588 aa15.62■□□□□ 0.09
TPM4-211ENST00000589897 CADPSQ9ULU8 1353 aa15.6■□□□□ 0.09
TPM4-211ENST00000589897 MRC2Q9UBG0 1479 aa15.57■□□□□ 0.08
TPM4-211ENST00000589897 WIZO95785 1651 aa15.48■□□□□ 0.07
TPM4-211ENST00000589897 KIF21AQ7Z4S6 1674 aa15.48■□□□□ 0.07
TPM4-211ENST00000589897 WDR62O43379 1518 aa15.48■□□□□ 0.07
TPM4-211ENST00000589897 AEBP2Q6ZN18 517 aaPredicted RBP15.46■□□□□ 0.07
TPM4-211ENST00000589897 TRHP20396 242 aaPredicted RBP15.44■□□□□ 0.06
TPM4-211ENST00000589897 CYB5RLQ6IPT4 315 aa15.4■□□□□ 0.06
TPM4-211ENST00000589897 CEP164Q9UPV0 1460 aa15.4■□□□□ 0.06
TPM4-211ENST00000589897 RSF1Q96T23 1441 aaPredicted RBP15.38■□□□□ 0.05
TPM4-211ENST00000589897 FANCD2Q9BXW9 1451 aa15.34■□□□□ 0.05
TPM4-211ENST00000589897 RIMBP3CA6NJZ7 1639 aa15.29■□□□□ 0.04
TPM4-211ENST00000589897 RIMBP3BA6NNM3 1639 aa15.29■□□□□ 0.04
TPM4-211ENST00000589897 RIMBP3Q9UFD9 1639 aa15.29■□□□□ 0.04
TPM4-211ENST00000589897 TOP2AP11388 1531 aaKnown RBP15.29■□□□□ 0.04
TPM4-211ENST00000589897 ARHGEF11O15085 1522 aa15.27■□□□□ 0.03
TPM4-211ENST00000589897 CFTRP13569 1480 aa15.23■□□□□ 0.03
TPM4-211ENST00000589897 URB2Q14146 1524 aaKnown RBP15.18■□□□□ 0.02
TPM4-211ENST00000589897 IFT140Q96RY7 1462 aa15.14■□□□□ 0.01
TPM4-211ENST00000589897 FBLN2P98095 1184 aa15.12■□□□□ 0.01
TPM4-211ENST00000589897 CCDC88BA6NC98 1476 aa15.12■□□□□ 0.01
TPM4-211ENST00000589897 ZNF608Q9ULD9 1512 aaPredicted RBP15.1■□□□□ 0.01
TPM4-211ENST00000589897 PRDM2Q13029 1718 aa15.09■□□□□ 0.01
TPM4-211ENST00000589897 ARAP1Q96P48 1450 aa15.08■□□□□ 0
TPM4-211ENST00000589897 ABCC8Q09428 1581 aa14.99□□□□□ -0.01
TPM4-211ENST00000589897 AQRO60306 1485 aaKnown RBP eCLIP14.96□□□□□ -0.01
TPM4-211ENST00000589897 SUPT5HO00267 1087 aaKnown RBP14.95□□□□□ -0.02
TPM4-211ENST00000589897 TOPBP1Q92547 1522 aa14.95□□□□□ -0.02
TPM4-211ENST00000589897 CHMP7Q8WUX9 453 aaPredicted RBP14.94□□□□□ -0.02
TPM4-211ENST00000589897 EIF4G3O43432 1585 aaKnown RBP14.87□□□□□ -0.03
TPM4-211ENST00000589897 DNMBPQ6XZF7 1577 aa14.86□□□□□ -0.03
TPM4-211ENST00000589897 TDRD9Q8NDG6 1382 aaKnown RBP14.83□□□□□ -0.04
TPM4-211ENST00000589897 SOGA1O94964 1423 aa14.8□□□□□ -0.04
TPM4-211ENST00000589897 CHD1O14646 1710 aa14.8□□□□□ -0.04
TPM4-211ENST00000589897 ILDR1Q86SU0 546 aaPredicted RBP14.76□□□□□ -0.05
TPM4-211ENST00000589897 TARBP1Q13395 1621 aaKnown RBP14.76□□□□□ -0.05
TPM4-211ENST00000589897 POLA1P09884 1462 aaPredicted RBP14.76□□□□□ -0.05
TPM4-211ENST00000589897 SYNJ1O43426 1573 aa14.75□□□□□ -0.05
TPM4-211ENST00000589897 GAPVD1Q14C86 1478 aa14.75□□□□□ -0.05
TPM4-211ENST00000589897 CLASP1Q7Z460 1538 aa14.74□□□□□ -0.05
TPM4-211ENST00000589897 SNAPC4Q5SXM2 1469 aa14.74□□□□□ -0.05
TPM4-211ENST00000589897 MAGI1Q96QZ7 1491 aaPredicted RBP14.72□□□□□ -0.05
TPM4-211ENST00000589897 RAD54L2Q9Y4B4 1467 aa14.72□□□□□ -0.05
TPM4-211ENST00000589897 FGD5Q6ZNL6 1462 aa14.69□□□□□ -0.06
TPM4-211ENST00000589897 SYNJ2O15056 1496 aa14.69□□□□□ -0.06
TPM4-211ENST00000589897 GRIN2BQ13224 1484 aa14.69□□□□□ -0.06
TPM4-211ENST00000589897 CUX1P39880 1505 aa14.68□□□□□ -0.06
TPM4-211ENST00000589897 WDR97A6NE52 1622 aa14.64□□□□□ -0.07
TPM4-211ENST00000589897 KDM4FA0A1W2PPD8 638 aa14.6□□□□□ -0.07
TPM4-211ENST00000589897 NPM1P06748 294 aaKnown RBP eCLIP14.59□□□□□ -0.07
TPM4-211ENST00000589897 FAM69CQ0P6D2 419 aa14.59□□□□□ -0.07
TPM4-211ENST00000589897 WRNQ14191 1432 aaPredicted RBP eCLIP14.55□□□□□ -0.08
TPM4-211ENST00000589897 PBRM1Q86U86 1689 aa14.52□□□□□ -0.08
TPM4-211ENST00000589897 ABCA10Q8WWZ4 1543 aa14.52□□□□□ -0.08
TPM4-211ENST00000589897 TOP2BQ02880 1626 aa14.52□□□□□ -0.09
TPM4-211ENST00000589897 BIVM-ERCC5R4GMW8 1640 aa14.51□□□□□ -0.09
TPM4-211ENST00000589897 JPH4Q96JJ6 628 aa14.47□□□□□ -0.09
TPM4-211ENST00000589897 ABCA5Q8WWZ7 1642 aa14.47□□□□□ -0.09
TPM4-211ENST00000589897 GRIN2AQ12879 1464 aa14.44□□□□□ -0.1
TPM4-211ENST00000589897 ABCC10Q5T3U5 1492 aa14.44□□□□□ -0.1
TPM4-211ENST00000589897 NUP160Q12769 1436 aa14.44□□□□□ -0.1
TPM4-211ENST00000589897 ERCC6L2Q5T890 1561 aa14.43□□□□□ -0.1
TPM4-211ENST00000589897 CEP170Q5SW79 1584 aa14.42□□□□□ -0.1
TPM4-211ENST00000589897 PRG4Q92954 1404 aaPredicted RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms