RNA–Protein interactions for RNA: ENST00000589758.1

MBD1-220, Transcript of methyl-CpG binding domain protein 1, humanhuman

TSL 1 (best)

Gene MBD1, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD1-220ENST00000589758 NISCHQ9Y2I1 1504 aa35.64■■■■□ 3.3
MBD1-220ENST00000589758 CCDC180Q9P1Z9 1646 aa31.92■■■□□ 2.7
MBD1-220ENST00000589758 ABCC9O60706 1549 aa31.69■■■□□ 2.66
MBD1-220ENST00000589758 RB1CC1Q8TDY2 1594 aa30.3■■■□□ 2.44
MBD1-220ENST00000589758 NACADO15069 1562 aa30.15■■■□□ 2.42
MBD1-220ENST00000589758 DCAF8L2P0C7V8 631 aa30■■■□□ 2.39
MBD1-220ENST00000589758 MYO15BQ96JP2 1530 aa29.81■■■□□ 2.36
MBD1-220ENST00000589758 ZCCHC6Q5VYS8 1495 aaKnown RBP29.57■■■□□ 2.32
MBD1-220ENST00000589758 UNC13AQ9UPW8 1703 aa29.56■■■□□ 2.32
MBD1-220ENST00000589758 DNAJC5BQ9UF47 199 aa29.54■■■□□ 2.32
MBD1-220ENST00000589758 PABPN1Q86U42 306 aaKnown RBP eCLIP29.53■■■□□ 2.32
MBD1-220ENST00000589758 DCAF1Q9Y4B6 1507 aa29.49■■■□□ 2.31
MBD1-220ENST00000589758 BICRAQ9NZM4 1560 aa29.35■■■□□ 2.29
MBD1-220ENST00000589758 SHROOM4Q9ULL8 1493 aa29.07■■■□□ 2.24
MBD1-220ENST00000589758 SCRIBQ14160 1630 aa29.04■■■□□ 2.24
MBD1-220ENST00000589758 CC2D2AQ9P2K1 1620 aa28.65■■■□□ 2.18
MBD1-220ENST00000589758 EIF4G1Q04637 1599 aaKnown RBP28.64■■■□□ 2.18
MBD1-220ENST00000589758 CECR2Q9BXF3 1484 aa28.55■■■□□ 2.16
MBD1-220ENST00000589758 NCAPD3P42695 1498 aa27.83■■■□□ 2.04
MBD1-220ENST00000589758 SMARCA4P51532 1647 aa27.75■■■□□ 2.03
MBD1-220ENST00000589758 ATAD2BQ9ULI0 1458 aa27.74■■■□□ 2.03
MBD1-220ENST00000589758 SMARCA2P51531 1590 aa27.7■■■□□ 2.03
MBD1-220ENST00000589758 BAZ1AQ9NRL2 1556 aaPredicted RBP27.68■■■□□ 2.02
MBD1-220ENST00000589758 HMGXB3Q12766 1538 aa27.62■■■□□ 2.01
MBD1-220ENST00000589758 PEG3Q9GZU2 1588 aa27.51■■□□□ 1.99
MBD1-220ENST00000589758 BAZ1BQ9UIG0 1483 aaKnown RBP27.49■■□□□ 1.99
MBD1-220ENST00000589758 MROH2BQ7Z745 1585 aa27.43■■□□□ 1.98
MBD1-220ENST00000589758 DNAJC5Q9H3Z4 198 aa27.41■■□□□ 1.98
MBD1-220ENST00000589758 ERCC6Q03468 1493 aa27.38■■□□□ 1.97
MBD1-220ENST00000589758 CUX2O14529 1486 aa27.29■■□□□ 1.96
MBD1-220ENST00000589758 NESP48681 1621 aa27.26■■□□□ 1.95
MBD1-220ENST00000589758 LAMC3Q9Y6N6 1575 aa27.17■■□□□ 1.94
MBD1-220ENST00000589758 WIZO95785 1651 aa27.11■■□□□ 1.93
MBD1-220ENST00000589758 PDS5BQ9NTI5 1447 aa27.02■■□□□ 1.92
MBD1-220ENST00000589758 CADPSQ9ULU8 1353 aa26.98■■□□□ 1.91
MBD1-220ENST00000589758 THOC2Q8NI27 1593 aaKnown RBP26.97■■□□□ 1.91
MBD1-220ENST00000589758 RSF1Q96T23 1441 aaPredicted RBP26.95■■□□□ 1.9
MBD1-220ENST00000589758 KIF21AQ7Z4S6 1674 aa26.93■■□□□ 1.9
MBD1-220ENST00000589758 TOP2AP11388 1531 aaKnown RBP26.82■■□□□ 1.88
MBD1-220ENST00000589758 MRC2Q9UBG0 1479 aa26.74■■□□□ 1.87
MBD1-220ENST00000589758 CFTRP13569 1480 aa26.7■■□□□ 1.87
MBD1-220ENST00000589758 CEP164Q9UPV0 1460 aa26.68■■□□□ 1.86
MBD1-220ENST00000589758 WDR62O43379 1518 aa26.66■■□□□ 1.86
MBD1-220ENST00000589758 FANCD2Q9BXW9 1451 aa26.66■■□□□ 1.86
MBD1-220ENST00000589758 CCDC88BA6NC98 1476 aa26.5■■□□□ 1.83
MBD1-220ENST00000589758 PRDM2Q13029 1718 aa26.46■■□□□ 1.83
MBD1-220ENST00000589758 URB2Q14146 1524 aaKnown RBP26.4■■□□□ 1.82
MBD1-220ENST00000589758 ABCC8Q09428 1581 aa26.2■■□□□ 1.78
MBD1-220ENST00000589758 TOPBP1Q92547 1522 aa26.17■■□□□ 1.78
MBD1-220ENST00000589758 IFT140Q96RY7 1462 aa26.15■■□□□ 1.78
MBD1-220ENST00000589758 DNMBPQ6XZF7 1577 aa26.1■■□□□ 1.77
MBD1-220ENST00000589758 OSCARQ8IYS5 282 aa26.08■■□□□ 1.77
MBD1-220ENST00000589758 ZNF608Q9ULD9 1512 aaPredicted RBP26.03■■□□□ 1.76
MBD1-220ENST00000589758 TRIM41Q8WV44 630 aa25.92■■□□□ 1.74
MBD1-220ENST00000589758 TARBP1Q13395 1621 aaKnown RBP25.92■■□□□ 1.74
MBD1-220ENST00000589758 EIF4G3O43432 1585 aaKnown RBP25.91■■□□□ 1.74
MBD1-220ENST00000589758 POLA1P09884 1462 aaPredicted RBP25.91■■□□□ 1.74
MBD1-220ENST00000589758 SUPT5HO00267 1087 aaKnown RBP25.89■■□□□ 1.74
MBD1-220ENST00000589758 AQRO60306 1485 aaKnown RBP eCLIP25.84■■□□□ 1.73
MBD1-220ENST00000589758 SOGA1O94964 1423 aa25.82■■□□□ 1.72
MBD1-220ENST00000589758 RAD54L2Q9Y4B4 1467 aa25.79■■□□□ 1.72
MBD1-220ENST00000589758 FGD5Q6ZNL6 1462 aa25.78■■□□□ 1.72
MBD1-220ENST00000589758 CUX1P39880 1505 aa25.76■■□□□ 1.71
MBD1-220ENST00000589758 WDR97A6NE52 1622 aa25.73■■□□□ 1.71
MBD1-220ENST00000589758 TDRD9Q8NDG6 1382 aaKnown RBP25.71■■□□□ 1.71
MBD1-220ENST00000589758 CHD1O14646 1710 aa25.68■■□□□ 1.7
MBD1-220ENST00000589758 RIMBP3CA6NJZ7 1639 aa25.67■■□□□ 1.7
MBD1-220ENST00000589758 RIMBP3BA6NNM3 1639 aa25.67■■□□□ 1.7
MBD1-220ENST00000589758 RIMBP3Q9UFD9 1639 aa25.67■■□□□ 1.7
MBD1-220ENST00000589758 FBLN2P98095 1184 aa25.65■■□□□ 1.7
MBD1-220ENST00000589758 ARHGEF11O15085 1522 aa25.62■■□□□ 1.69
MBD1-220ENST00000589758 SNAPC4Q5SXM2 1469 aa25.59■■□□□ 1.69
MBD1-220ENST00000589758 GRIN2BQ13224 1484 aa25.58■■□□□ 1.69
MBD1-220ENST00000589758 MAGI1Q96QZ7 1491 aaPredicted RBP25.56■■□□□ 1.68
MBD1-220ENST00000589758 CHMP7Q8WUX9 453 aaPredicted RBP25.52■■□□□ 1.68
MBD1-220ENST00000589758 ABCA10Q8WWZ4 1543 aa25.51■■□□□ 1.67
MBD1-220ENST00000589758 GAPVD1Q14C86 1478 aa25.5■■□□□ 1.67
MBD1-220ENST00000589758 SYNJ2O15056 1496 aa25.47■■□□□ 1.67
MBD1-220ENST00000589758 WRNQ14191 1432 aaPredicted RBP eCLIP25.46■■□□□ 1.67
MBD1-220ENST00000589758 PBRM1Q86U86 1689 aa25.46■■□□□ 1.67
MBD1-220ENST00000589758 SYNJ1O43426 1573 aa25.44■■□□□ 1.66
MBD1-220ENST00000589758 CYB5RLQ6IPT4 315 aa25.44■■□□□ 1.66
MBD1-220ENST00000589758 ABCA5Q8WWZ7 1642 aa25.44■■□□□ 1.66
MBD1-220ENST00000589758 TOP2BQ02880 1626 aa25.43■■□□□ 1.66
MBD1-220ENST00000589758 BIVM-ERCC5R4GMW8 1640 aa25.43■■□□□ 1.66
MBD1-220ENST00000589758 CLASP1Q7Z460 1538 aa25.41■■□□□ 1.66
MBD1-220ENST00000589758 ARAP1Q96P48 1450 aa25.36■■□□□ 1.65
MBD1-220ENST00000589758 GRIN2AQ12879 1464 aa25.24■■□□□ 1.63
MBD1-220ENST00000589758 ADAMTS12P58397 1594 aa25.22■■□□□ 1.63
MBD1-220ENST00000589758 ERICH3Q5RHP9 1530 aa25.21■■□□□ 1.63
MBD1-220ENST00000589758 FHAD1B1AJZ9 1412 aa25.2■■□□□ 1.62
MBD1-220ENST00000589758 NUP160Q12769 1436 aa25.14■■□□□ 1.62
MBD1-220ENST00000589758 CEP170Q5SW79 1584 aa25.11■■□□□ 1.61
MBD1-220ENST00000589758 TRHP20396 242 aaPredicted RBP25.11■■□□□ 1.61
MBD1-220ENST00000589758 SHROOM2Q13796 1616 aa25.01■■□□□ 1.59
MBD1-220ENST00000589758 ERCC6L2Q5T890 1561 aa24.98■■□□□ 1.59
MBD1-220ENST00000589758 KIF27Q86VH2 1401 aa24.96■■□□□ 1.59
MBD1-220ENST00000589758 IGF1RP08069 1367 aa24.92■■□□□ 1.58
MBD1-220ENST00000589758 JPH4Q96JJ6 628 aa24.91■■□□□ 1.58
MBD1-220ENST00000589758 PRG4Q92954 1404 aaPredicted RBP24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms