RNA–Protein interactions for RNA: ENST00000589675.5

DDX39A-210, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 829 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-210ENST00000589675 NISCHQ9Y2I1 1504 aa27.83■■■□□ 2.05
DDX39A-210ENST00000589675 CCDC180Q9P1Z9 1646 aa24.96■■□□□ 1.59
DDX39A-210ENST00000589675 ABCC9O60706 1549 aa24.71■■□□□ 1.55
DDX39A-210ENST00000589675 RB1CC1Q8TDY2 1594 aa23.67■■□□□ 1.38
DDX39A-210ENST00000589675 NACADO15069 1562 aa23.56■■□□□ 1.36
DDX39A-210ENST00000589675 MYO15BQ96JP2 1530 aa23.33■■□□□ 1.32
DDX39A-210ENST00000589675 DCAF8L2P0C7V8 631 aa23.32■■□□□ 1.32
DDX39A-210ENST00000589675 UNC13AQ9UPW8 1703 aa23.14■■□□□ 1.3
DDX39A-210ENST00000589675 DNAJC5BQ9UF47 199 aa23.09■■□□□ 1.29
DDX39A-210ENST00000589675 ZCCHC6Q5VYS8 1495 aaKnown RBP23.09■■□□□ 1.29
DDX39A-210ENST00000589675 DCAF1Q9Y4B6 1507 aa23.06■■□□□ 1.28
DDX39A-210ENST00000589675 PABPN1Q86U42 306 aaKnown RBP eCLIP23.02■■□□□ 1.28
DDX39A-210ENST00000589675 BICRAQ9NZM4 1560 aa22.97■■□□□ 1.27
DDX39A-210ENST00000589675 SHROOM4Q9ULL8 1493 aa22.74■■□□□ 1.23
DDX39A-210ENST00000589675 SCRIBQ14160 1630 aa22.64■■□□□ 1.22
DDX39A-210ENST00000589675 CC2D2AQ9P2K1 1620 aa22.39■■□□□ 1.17
DDX39A-210ENST00000589675 EIF4G1Q04637 1599 aaKnown RBP22.38■■□□□ 1.17
DDX39A-210ENST00000589675 CECR2Q9BXF3 1484 aa22.28■■□□□ 1.16
DDX39A-210ENST00000589675 NCAPD3P42695 1498 aa21.75■■□□□ 1.07
DDX39A-210ENST00000589675 SMARCA4P51532 1647 aa21.68■■□□□ 1.06
DDX39A-210ENST00000589675 ATAD2BQ9ULI0 1458 aa21.66■■□□□ 1.06
DDX39A-210ENST00000589675 SMARCA2P51531 1590 aa21.63■■□□□ 1.05
DDX39A-210ENST00000589675 BAZ1AQ9NRL2 1556 aaPredicted RBP21.61■■□□□ 1.05
DDX39A-210ENST00000589675 HMGXB3Q12766 1538 aa21.59■■□□□ 1.05
DDX39A-210ENST00000589675 PEG3Q9GZU2 1588 aa21.52■■□□□ 1.04
DDX39A-210ENST00000589675 BAZ1BQ9UIG0 1483 aaKnown RBP21.45■■□□□ 1.02
DDX39A-210ENST00000589675 MROH2BQ7Z745 1585 aa21.41■■□□□ 1.02
DDX39A-210ENST00000589675 ERCC6Q03468 1493 aa21.34■■□□□ 1.01
DDX39A-210ENST00000589675 CUX2O14529 1486 aa21.33■■□□□ 1.01
DDX39A-210ENST00000589675 NESP48681 1621 aa21.28■■□□□ 1
DDX39A-210ENST00000589675 LAMC3Q9Y6N6 1575 aa21.23■□□□□ 0.99
DDX39A-210ENST00000589675 WIZO95785 1651 aa21.16■□□□□ 0.98
DDX39A-210ENST00000589675 DNAJC5Q9H3Z4 198 aa21.16■□□□□ 0.98
DDX39A-210ENST00000589675 PDS5BQ9NTI5 1447 aa21.09■□□□□ 0.97
DDX39A-210ENST00000589675 THOC2Q8NI27 1593 aaKnown RBP21.08■□□□□ 0.97
DDX39A-210ENST00000589675 CADPSQ9ULU8 1353 aa21.07■□□□□ 0.96
DDX39A-210ENST00000589675 KIF21AQ7Z4S6 1674 aa21.05■□□□□ 0.96
DDX39A-210ENST00000589675 RSF1Q96T23 1441 aaPredicted RBP21.04■□□□□ 0.96
DDX39A-210ENST00000589675 TOP2AP11388 1531 aaKnown RBP20.93■□□□□ 0.94
DDX39A-210ENST00000589675 MRC2Q9UBG0 1479 aa20.88■□□□□ 0.93
DDX39A-210ENST00000589675 CFTRP13569 1480 aa20.87■□□□□ 0.93
DDX39A-210ENST00000589675 WDR62O43379 1518 aa20.83■□□□□ 0.93
DDX39A-210ENST00000589675 CEP164Q9UPV0 1460 aa20.81■□□□□ 0.92
DDX39A-210ENST00000589675 FANCD2Q9BXW9 1451 aa20.81■□□□□ 0.92
DDX39A-210ENST00000589675 PRDM2Q13029 1718 aa20.7■□□□□ 0.9
DDX39A-210ENST00000589675 CCDC88BA6NC98 1476 aa20.68■□□□□ 0.9
DDX39A-210ENST00000589675 URB2Q14146 1524 aaKnown RBP20.62■□□□□ 0.89
DDX39A-210ENST00000589675 ABCC8Q09428 1581 aa20.46■□□□□ 0.87
DDX39A-210ENST00000589675 TOPBP1Q92547 1522 aa20.43■□□□□ 0.86
DDX39A-210ENST00000589675 IFT140Q96RY7 1462 aa20.41■□□□□ 0.86
DDX39A-210ENST00000589675 DNMBPQ6XZF7 1577 aa20.38■□□□□ 0.85
DDX39A-210ENST00000589675 OSCARQ8IYS5 282 aa20.36■□□□□ 0.85
DDX39A-210ENST00000589675 ZNF608Q9ULD9 1512 aaPredicted RBP20.32■□□□□ 0.84
DDX39A-210ENST00000589675 TARBP1Q13395 1621 aaKnown RBP20.26■□□□□ 0.83
DDX39A-210ENST00000589675 EIF4G3O43432 1585 aaKnown RBP20.24■□□□□ 0.83
DDX39A-210ENST00000589675 POLA1P09884 1462 aaPredicted RBP20.23■□□□□ 0.83
DDX39A-210ENST00000589675 TRIM41Q8WV44 630 aa20.18■□□□□ 0.82
DDX39A-210ENST00000589675 AQRO60306 1485 aaKnown RBP eCLIP20.16■□□□□ 0.821e-7■■■■■ 33.7
DDX39A-210ENST00000589675 SOGA1O94964 1423 aa20.14■□□□□ 0.81
DDX39A-210ENST00000589675 WDR97A6NE52 1622 aa20.12■□□□□ 0.81
DDX39A-210ENST00000589675 CUX1P39880 1505 aa20.12■□□□□ 0.81
DDX39A-210ENST00000589675 RAD54L2Q9Y4B4 1467 aa20.11■□□□□ 0.81
DDX39A-210ENST00000589675 SUPT5HO00267 1087 aaKnown RBP20.11■□□□□ 0.81
DDX39A-210ENST00000589675 FGD5Q6ZNL6 1462 aa20.1■□□□□ 0.81
DDX39A-210ENST00000589675 CHD1O14646 1710 aa20.07■□□□□ 0.8
DDX39A-210ENST00000589675 RIMBP3CA6NJZ7 1639 aa20.06■□□□□ 0.8
DDX39A-210ENST00000589675 RIMBP3BA6NNM3 1639 aa20.06■□□□□ 0.8
DDX39A-210ENST00000589675 RIMBP3Q9UFD9 1639 aa20.06■□□□□ 0.8
DDX39A-210ENST00000589675 TDRD9Q8NDG6 1382 aaKnown RBP20.05■□□□□ 0.8
DDX39A-210ENST00000589675 ARHGEF11O15085 1522 aa20.02■□□□□ 0.79
DDX39A-210ENST00000589675 FBLN2P98095 1184 aa19.96■□□□□ 0.79
DDX39A-210ENST00000589675 GRIN2BQ13224 1484 aa19.96■□□□□ 0.79
DDX39A-210ENST00000589675 SNAPC4Q5SXM2 1469 aa19.96■□□□□ 0.79
DDX39A-210ENST00000589675 MAGI1Q96QZ7 1491 aaPredicted RBP19.96■□□□□ 0.79
DDX39A-210ENST00000589675 ABCA10Q8WWZ4 1543 aa19.92■□□□□ 0.78
DDX39A-210ENST00000589675 GAPVD1Q14C86 1478 aa19.9■□□□□ 0.78
DDX39A-210ENST00000589675 PBRM1Q86U86 1689 aa19.89■□□□□ 0.77
DDX39A-210ENST00000589675 CHMP7Q8WUX9 453 aaPredicted RBP19.89■□□□□ 0.77
DDX39A-210ENST00000589675 SYNJ2O15056 1496 aa19.88■□□□□ 0.77
DDX39A-210ENST00000589675 ABCA5Q8WWZ7 1642 aa19.87■□□□□ 0.77
DDX39A-210ENST00000589675 BIVM-ERCC5R4GMW8 1640 aa19.87■□□□□ 0.77
DDX39A-210ENST00000589675 WRNQ14191 1432 aaPredicted RBP eCLIP19.86■□□□□ 0.771e-9■■■■■ 51
DDX39A-210ENST00000589675 TOP2BQ02880 1626 aa19.86■□□□□ 0.77
DDX39A-210ENST00000589675 SYNJ1O43426 1573 aa19.86■□□□□ 0.77
DDX39A-210ENST00000589675 CLASP1Q7Z460 1538 aa19.86■□□□□ 0.77
DDX39A-210ENST00000589675 CYB5RLQ6IPT4 315 aa19.83■□□□□ 0.77
DDX39A-210ENST00000589675 ARAP1Q96P48 1450 aa19.81■□□□□ 0.76
DDX39A-210ENST00000589675 ADAMTS12P58397 1594 aa19.7■□□□□ 0.74
DDX39A-210ENST00000589675 GRIN2AQ12879 1464 aa19.69■□□□□ 0.74
DDX39A-210ENST00000589675 ERICH3Q5RHP9 1530 aa19.69■□□□□ 0.74
DDX39A-210ENST00000589675 FHAD1B1AJZ9 1412 aa19.67■□□□□ 0.74
DDX39A-210ENST00000589675 NUP160Q12769 1436 aa19.64■□□□□ 0.73
DDX39A-210ENST00000589675 CEP170Q5SW79 1584 aa19.61■□□□□ 0.73
DDX39A-210ENST00000589675 SHROOM2Q13796 1616 aa19.56■□□□□ 0.72
DDX39A-210ENST00000589675 TRHP20396 242 aaPredicted RBP19.54■□□□□ 0.72
DDX39A-210ENST00000589675 ERCC6L2Q5T890 1561 aa19.51■□□□□ 0.71
DDX39A-210ENST00000589675 KIF27Q86VH2 1401 aa19.46■□□□□ 0.71
DDX39A-210ENST00000589675 IGF1RP08069 1367 aa19.44■□□□□ 0.7
DDX39A-210ENST00000589675 JPH4Q96JJ6 628 aa19.43■□□□□ 0.7
DDX39A-210ENST00000589675 CUL7Q14999 1698 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms