RNA–Protein interactions for RNA: ENST00000589577.1

VPS25-204, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 5

Gene VPS25, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-204ENST00000589577 NISCHQ9Y2I1 1504 aa16.24■□□□□ 0.19
VPS25-204ENST00000589577 ABCC9O60706 1549 aa15.33■□□□□ 0.04
VPS25-204ENST00000589577 DNAJC5BQ9UF47 199 aa14.88□□□□□ -0.03
VPS25-204ENST00000589577 CCDC180Q9P1Z9 1646 aa14.86□□□□□ -0.03
VPS25-204ENST00000589577 RB1CC1Q8TDY2 1594 aa14.34□□□□□ -0.11
VPS25-204ENST00000589577 UNC13AQ9UPW8 1703 aa14.17□□□□□ -0.14
VPS25-204ENST00000589577 PABPN1Q86U42 306 aaKnown RBP eCLIP14.13□□□□□ -0.15
VPS25-204ENST00000589577 NACADO15069 1562 aa14.12□□□□□ -0.15
VPS25-204ENST00000589577 BICRAQ9NZM4 1560 aa14.05□□□□□ -0.16
VPS25-204ENST00000589577 DNAJC5Q9H3Z4 198 aa13.99□□□□□ -0.17
VPS25-204ENST00000589577 CC2D2AQ9P2K1 1620 aa13.86□□□□□ -0.19
VPS25-204ENST00000589577 CECR2Q9BXF3 1484 aa13.85□□□□□ -0.19
VPS25-204ENST00000589577 DCAF8L2P0C7V8 631 aa13.77□□□□□ -0.21
VPS25-204ENST00000589577 MYO15BQ96JP2 1530 aa13.75□□□□□ -0.21
VPS25-204ENST00000589577 SHROOM4Q9ULL8 1493 aa13.71□□□□□ -0.21
VPS25-204ENST00000589577 EIF4G1Q04637 1599 aaKnown RBP13.69□□□□□ -0.22
VPS25-204ENST00000589577 SCRIBQ14160 1630 aa13.49□□□□□ -0.25
VPS25-204ENST00000589577 CUX2O14529 1486 aa13.42□□□□□ -0.26
VPS25-204ENST00000589577 DCAF1Q9Y4B6 1507 aa13.39□□□□□ -0.27
VPS25-204ENST00000589577 ZCCHC6Q5VYS8 1495 aaKnown RBP13.37□□□□□ -0.27
VPS25-204ENST00000589577 ERCC6Q03468 1493 aa13.22□□□□□ -0.29
VPS25-204ENST00000589577 TRIM41Q8WV44 630 aa13.11□□□□□ -0.31
VPS25-204ENST00000589577 THOC2Q8NI27 1593 aaKnown RBP13.07□□□□□ -0.32
VPS25-204ENST00000589577 NESP48681 1621 aa13.05□□□□□ -0.32
VPS25-204ENST00000589577 NCAPD3P42695 1498 aa13.04□□□□□ -0.32
VPS25-204ENST00000589577 ATAD2BQ9ULI0 1458 aa12.93□□□□□ -0.34
VPS25-204ENST00000589577 HMGXB3Q12766 1538 aa12.93□□□□□ -0.34
VPS25-204ENST00000589577 KIF21AQ7Z4S6 1674 aa12.91□□□□□ -0.34
VPS25-204ENST00000589577 SMARCA2P51531 1590 aa12.9□□□□□ -0.34
VPS25-204ENST00000589577 LAMC3Q9Y6N6 1575 aa12.85□□□□□ -0.35
VPS25-204ENST00000589577 SMARCA4P51532 1647 aa12.82□□□□□ -0.36
VPS25-204ENST00000589577 BAZ1AQ9NRL2 1556 aaPredicted RBP12.8□□□□□ -0.36
VPS25-204ENST00000589577 BAZ1BQ9UIG0 1483 aaKnown RBP12.75□□□□□ -0.37
VPS25-204ENST00000589577 WDR62O43379 1518 aa12.72□□□□□ -0.37
VPS25-204ENST00000589577 PDS5BQ9NTI5 1447 aa12.71□□□□□ -0.37
VPS25-204ENST00000589577 PEG3Q9GZU2 1588 aa12.71□□□□□ -0.37
VPS25-204ENST00000589577 MRC2Q9UBG0 1479 aa12.69□□□□□ -0.38
VPS25-204ENST00000589577 RIMBP3CA6NJZ7 1639 aa12.67□□□□□ -0.38
VPS25-204ENST00000589577 RIMBP3BA6NNM3 1639 aa12.67□□□□□ -0.38
VPS25-204ENST00000589577 RIMBP3Q9UFD9 1639 aa12.67□□□□□ -0.38
VPS25-204ENST00000589577 OSCARQ8IYS5 282 aa12.62□□□□□ -0.39
VPS25-204ENST00000589577 CADPSQ9ULU8 1353 aa12.57□□□□□ -0.4
VPS25-204ENST00000589577 ARHGEF11O15085 1522 aa12.55□□□□□ -0.4
VPS25-204ENST00000589577 MROH2BQ7Z745 1585 aa12.53□□□□□ -0.4
VPS25-204ENST00000589577 CEP164Q9UPV0 1460 aa12.53□□□□□ -0.4
VPS25-204ENST00000589577 FANCD2Q9BXW9 1451 aa12.46□□□□□ -0.41
VPS25-204ENST00000589577 URB2Q14146 1524 aaKnown RBP12.45□□□□□ -0.42
VPS25-204ENST00000589577 ARAP1Q96P48 1450 aa12.4□□□□□ -0.43
VPS25-204ENST00000589577 TRHP20396 242 aaPredicted RBP12.38□□□□□ -0.43
VPS25-204ENST00000589577 CYB5RLQ6IPT4 315 aa12.38□□□□□ -0.43
VPS25-204ENST00000589577 AEBP2Q6ZN18 517 aaPredicted RBP12.38□□□□□ -0.43
VPS25-204ENST00000589577 WIZO95785 1651 aa12.38□□□□□ -0.43
VPS25-204ENST00000589577 ZNF608Q9ULD9 1512 aaPredicted RBP12.37□□□□□ -0.43
VPS25-204ENST00000589577 CFTRP13569 1480 aa12.36□□□□□ -0.43
VPS25-204ENST00000589577 CHD1O14646 1710 aa12.34□□□□□ -0.43
VPS25-204ENST00000589577 EIF4G3O43432 1585 aaKnown RBP12.3□□□□□ -0.44
VPS25-204ENST00000589577 PRDM2Q13029 1718 aa12.29□□□□□ -0.44
VPS25-204ENST00000589577 IFT140Q96RY7 1462 aa12.28□□□□□ -0.44
VPS25-204ENST00000589577 RSF1Q96T23 1441 aaPredicted RBP12.26□□□□□ -0.45
VPS25-204ENST00000589577 TOPBP1Q92547 1522 aa12.19□□□□□ -0.46
VPS25-204ENST00000589577 TARBP1Q13395 1621 aaKnown RBP12.18□□□□□ -0.46
VPS25-204ENST00000589577 CLASP1Q7Z460 1538 aa12.16□□□□□ -0.46
VPS25-204ENST00000589577 TOP2AP11388 1531 aaKnown RBP12.15□□□□□ -0.46
VPS25-204ENST00000589577 AQRO60306 1485 aaKnown RBP eCLIP12.14□□□□□ -0.472e-9■■■■□ 22.3
VPS25-204ENST00000589577 DNMBPQ6XZF7 1577 aa12.1□□□□□ -0.47
VPS25-204ENST00000589577 FBLN2P98095 1184 aa12.08□□□□□ -0.48
VPS25-204ENST00000589577 ABCC8Q09428 1581 aa12.05□□□□□ -0.48
VPS25-204ENST00000589577 ILDR1Q86SU0 546 aaPredicted RBP12.04□□□□□ -0.48
VPS25-204ENST00000589577 SYNJ1O43426 1573 aa12.04□□□□□ -0.48
VPS25-204ENST00000589577 POLA1P09884 1462 aaPredicted RBP12.03□□□□□ -0.48
VPS25-204ENST00000589577 SNAPC4Q5SXM2 1469 aa12.02□□□□□ -0.48
VPS25-204ENST00000589577 GAPVD1Q14C86 1478 aa12.01□□□□□ -0.49
VPS25-204ENST00000589577 KIF13AQ9H1H9 1805 aa12□□□□□ -0.49
VPS25-204ENST00000589577 CCDC88BA6NC98 1476 aa11.99□□□□□ -0.49
VPS25-204ENST00000589577 RAD54L2Q9Y4B4 1467 aa11.99□□□□□ -0.49
VPS25-204ENST00000589577 TDRD9Q8NDG6 1382 aaKnown RBP11.97□□□□□ -0.49
VPS25-204ENST00000589577 WDR97A6NE52 1622 aa11.97□□□□□ -0.49
VPS25-204ENST00000589577 MAGI1Q96QZ7 1491 aaPredicted RBP11.95□□□□□ -0.5
VPS25-204ENST00000589577 ERCC6L2Q5T890 1561 aa11.95□□□□□ -0.5
VPS25-204ENST00000589577 SYNJ2O15056 1496 aa11.93□□□□□ -0.5
VPS25-204ENST00000589577 SOGA1O94964 1423 aa11.91□□□□□ -0.5
VPS25-204ENST00000589577 CHMP7Q8WUX9 453 aaPredicted RBP11.9□□□□□ -0.5
VPS25-204ENST00000589577 PBRM1Q86U86 1689 aa11.9□□□□□ -0.5
VPS25-204ENST00000589577 GRIN2BQ13224 1484 aa11.89□□□□□ -0.51
VPS25-204ENST00000589577 FGD5Q6ZNL6 1462 aa11.88□□□□□ -0.51
VPS25-204ENST00000589577 KDM4FA0A1W2PPD8 638 aa11.87□□□□□ -0.51
VPS25-204ENST00000589577 CEP170Q5SW79 1584 aa11.84□□□□□ -0.51
VPS25-204ENST00000589577 SHROOM2Q13796 1616 aa11.82□□□□□ -0.52
VPS25-204ENST00000589577 CUX1P39880 1505 aa11.81□□□□□ -0.52
VPS25-204ENST00000589577 ABCA5Q8WWZ7 1642 aa11.8□□□□□ -0.52
VPS25-204ENST00000589577 KDM6BO15054 1643 aa11.78□□□□□ -0.52
VPS25-204ENST00000589577 DIP2BQ9P265 1576 aa11.77□□□□□ -0.53
VPS25-204ENST00000589577 GRIN2AQ12879 1464 aa11.76□□□□□ -0.53
VPS25-204ENST00000589577 ABCC10Q5T3U5 1492 aa11.76□□□□□ -0.53
VPS25-204ENST00000589577 NUP160Q12769 1436 aa11.75□□□□□ -0.53
VPS25-204ENST00000589577 ADAMTS12P58397 1594 aa11.73□□□□□ -0.53
VPS25-204ENST00000589577 MAPKBP1O60336 1514 aa11.72□□□□□ -0.53
VPS25-204ENST00000589577 HECW2Q9P2P5 1572 aa11.71□□□□□ -0.53
VPS25-204ENST00000589577 TSPOAP1O95153 1857 aa11.71□□□□□ -0.53
VPS25-204ENST00000589577 ABCA10Q8WWZ4 1543 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms