RNA–Protein interactions for RNA: ENST00000589538.5

DNMT1-221, Transcript of DNA methyltransferase 1, humanhuman

TSL 5

Gene DNMT1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-221ENST00000589538 NISCHQ9Y2I1 1504 aa39.91■■■■□ 3.98
DNMT1-221ENST00000589538 CCDC180Q9P1Z9 1646 aa35.57■■■■□ 3.29
DNMT1-221ENST00000589538 ABCC9O60706 1549 aa34.74■■■■□ 3.15
DNMT1-221ENST00000589538 RB1CC1Q8TDY2 1594 aa33.5■■■□□ 2.95
DNMT1-221ENST00000589538 NACADO15069 1562 aa33.45■■■□□ 2.95
DNMT1-221ENST00000589538 DCAF8L2P0C7V8 631 aa33.32■■■□□ 2.92
DNMT1-221ENST00000589538 MYO15BQ96JP2 1530 aa33.26■■■□□ 2.91
DNMT1-221ENST00000589538 ZCCHC6Q5VYS8 1495 aaKnown RBP33.24■■■□□ 2.91
DNMT1-221ENST00000589538 DCAF1Q9Y4B6 1507 aa33.08■■■□□ 2.89
DNMT1-221ENST00000589538 UNC13AQ9UPW8 1703 aa32.67■■■□□ 2.82
DNMT1-221ENST00000589538 PABPN1Q86U42 306 aaKnown RBP eCLIP32.41■■■□□ 2.78
DNMT1-221ENST00000589538 BICRAQ9NZM4 1560 aa32.4■■■□□ 2.78
DNMT1-221ENST00000589538 SCRIBQ14160 1630 aa32.36■■■□□ 2.77
DNMT1-221ENST00000589538 SHROOM4Q9ULL8 1493 aa32.2■■■□□ 2.75
DNMT1-221ENST00000589538 DNAJC5BQ9UF47 199 aa31.85■■■□□ 2.69
DNMT1-221ENST00000589538 EIF4G1Q04637 1599 aaKnown RBP31.58■■■□□ 2.65
DNMT1-221ENST00000589538 CC2D2AQ9P2K1 1620 aa31.46■■■□□ 2.63
DNMT1-221ENST00000589538 CECR2Q9BXF3 1484 aa31.25■■■□□ 2.59
DNMT1-221ENST00000589538 BAZ1AQ9NRL2 1556 aaPredicted RBP30.98■■■□□ 2.55
DNMT1-221ENST00000589538 SMARCA4P51532 1647 aa30.98■■■□□ 2.55
DNMT1-221ENST00000589538 SMARCA2P51531 1590 aa30.84■■■□□ 2.53
DNMT1-221ENST00000589538 NCAPD3P42695 1498 aa30.83■■■□□ 2.53
DNMT1-221ENST00000589538 ATAD2BQ9ULI0 1458 aa30.82■■■□□ 2.52
DNMT1-221ENST00000589538 MROH2BQ7Z745 1585 aa30.71■■■□□ 2.51
DNMT1-221ENST00000589538 PEG3Q9GZU2 1588 aa30.71■■■□□ 2.51
DNMT1-221ENST00000589538 HMGXB3Q12766 1538 aa30.7■■■□□ 2.51
DNMT1-221ENST00000589538 BAZ1BQ9UIG0 1483 aaKnown RBP30.58■■■□□ 2.49
DNMT1-221ENST00000589538 WIZO95785 1651 aa30.39■■■□□ 2.45
DNMT1-221ENST00000589538 RSF1Q96T23 1441 aaPredicted RBP30.36■■■□□ 2.45
DNMT1-221ENST00000589538 TOP2AP11388 1531 aaKnown RBP30.11■■■□□ 2.41
DNMT1-221ENST00000589538 LAMC3Q9Y6N6 1575 aa30.06■■■□□ 2.4
DNMT1-221ENST00000589538 NESP48681 1621 aa30.02■■■□□ 2.4
DNMT1-221ENST00000589538 ERCC6Q03468 1493 aa30.01■■■□□ 2.4
DNMT1-221ENST00000589538 CADPSQ9ULU8 1353 aa29.92■■■□□ 2.38
DNMT1-221ENST00000589538 PDS5BQ9NTI5 1447 aa29.87■■■□□ 2.37
DNMT1-221ENST00000589538 CUX2O14529 1486 aa29.74■■■□□ 2.35
DNMT1-221ENST00000589538 CFTRP13569 1480 aa29.74■■■□□ 2.35
DNMT1-221ENST00000589538 CCDC88BA6NC98 1476 aa29.72■■■□□ 2.35
DNMT1-221ENST00000589538 KIF21AQ7Z4S6 1674 aa29.72■■■□□ 2.35
DNMT1-221ENST00000589538 THOC2Q8NI27 1593 aaKnown RBP29.64■■■□□ 2.33
DNMT1-221ENST00000589538 FANCD2Q9BXW9 1451 aa29.57■■■□□ 2.32
DNMT1-221ENST00000589538 CEP164Q9UPV0 1460 aa29.57■■■□□ 2.32
DNMT1-221ENST00000589538 PRDM2Q13029 1718 aa29.56■■■□□ 2.32
DNMT1-221ENST00000589538 MRC2Q9UBG0 1479 aa29.53■■■□□ 2.32
DNMT1-221ENST00000589538 SUPT5HO00267 1087 aaKnown RBP29.52■■■□□ 2.32
DNMT1-221ENST00000589538 WDR62O43379 1518 aa29.42■■■□□ 2.3
DNMT1-221ENST00000589538 URB2Q14146 1524 aaKnown RBP29.25■■■□□ 2.27
DNMT1-221ENST00000589538 ABCC8Q09428 1581 aa29.18■■■□□ 2.26
DNMT1-221ENST00000589538 TOPBP1Q92547 1522 aa29.09■■■□□ 2.25
DNMT1-221ENST00000589538 DNMBPQ6XZF7 1577 aa29.08■■■□□ 2.25
DNMT1-221ENST00000589538 IFT140Q96RY7 1462 aa28.95■■■□□ 2.22
DNMT1-221ENST00000589538 DNAJC5Q9H3Z4 198 aa28.84■■■□□ 2.21
DNMT1-221ENST00000589538 CUX1P39880 1505 aa28.84■■■□□ 2.21
DNMT1-221ENST00000589538 POLA1P09884 1462 aaPredicted RBP28.83■■■□□ 2.21
DNMT1-221ENST00000589538 TARBP1Q13395 1621 aaKnown RBP28.77■■■□□ 2.2
DNMT1-221ENST00000589538 FGD5Q6ZNL6 1462 aa28.75■■■□□ 2.19
DNMT1-221ENST00000589538 ZNF608Q9ULD9 1512 aaPredicted RBP28.74■■■□□ 2.19
DNMT1-221ENST00000589538 SOGA1O94964 1423 aa28.73■■■□□ 2.19
DNMT1-221ENST00000589538 EIF4G3O43432 1585 aaKnown RBP28.68■■■□□ 2.18
DNMT1-221ENST00000589538 RAD54L2Q9Y4B4 1467 aa28.66■■■□□ 2.18
DNMT1-221ENST00000589538 WRNQ14191 1432 aaPredicted RBP eCLIP28.66■■■□□ 2.18
DNMT1-221ENST00000589538 WDR97A6NE52 1622 aa28.65■■■□□ 2.18
DNMT1-221ENST00000589538 TOP2BQ02880 1626 aa28.61■■■□□ 2.17
DNMT1-221ENST00000589538 BIVM-ERCC5R4GMW8 1640 aa28.61■■■□□ 2.17
DNMT1-221ENST00000589538 AQRO60306 1485 aaKnown RBP eCLIP28.59■■■□□ 2.179e-11■■■■■ 29.6
DNMT1-221ENST00000589538 SYNJ1O43426 1573 aa28.54■■■□□ 2.16
DNMT1-221ENST00000589538 TDRD9Q8NDG6 1382 aaKnown RBP28.53■■■□□ 2.16
DNMT1-221ENST00000589538 ABCA10Q8WWZ4 1543 aa28.51■■■□□ 2.15
DNMT1-221ENST00000589538 OSCARQ8IYS5 282 aa28.48■■■□□ 2.15
DNMT1-221ENST00000589538 GRIN2BQ13224 1484 aa28.42■■■□□ 2.14
DNMT1-221ENST00000589538 GAPVD1Q14C86 1478 aa28.4■■■□□ 2.14
DNMT1-221ENST00000589538 ABCA5Q8WWZ7 1642 aa28.38■■■□□ 2.13
DNMT1-221ENST00000589538 MAGI1Q96QZ7 1491 aaPredicted RBP28.37■■■□□ 2.13
DNMT1-221ENST00000589538 PBRM1Q86U86 1689 aa28.35■■■□□ 2.13
DNMT1-221ENST00000589538 SNAPC4Q5SXM2 1469 aa28.35■■■□□ 2.13
DNMT1-221ENST00000589538 CHD1O14646 1710 aa28.32■■■□□ 2.12
DNMT1-221ENST00000589538 FBLN2P98095 1184 aa28.28■■■□□ 2.12
DNMT1-221ENST00000589538 SYNJ2O15056 1496 aa28.24■■■□□ 2.11
DNMT1-221ENST00000589538 CHMP7Q8WUX9 453 aaPredicted RBP28.23■■■□□ 2.11
DNMT1-221ENST00000589538 ERICH3Q5RHP9 1530 aa28.19■■■□□ 2.1
DNMT1-221ENST00000589538 ADAMTS12P58397 1594 aa28.11■■■□□ 2.09
DNMT1-221ENST00000589538 FHAD1B1AJZ9 1412 aa28.09■■■□□ 2.09
DNMT1-221ENST00000589538 KIF27Q86VH2 1401 aa28.09■■■□□ 2.09
DNMT1-221ENST00000589538 GRIN2AQ12879 1464 aa28.03■■■□□ 2.08
DNMT1-221ENST00000589538 CLASP1Q7Z460 1538 aa28.02■■■□□ 2.08
DNMT1-221ENST00000589538 RIMBP3CA6NJZ7 1639 aa28■■■□□ 2.07
DNMT1-221ENST00000589538 RIMBP3BA6NNM3 1639 aa28■■■□□ 2.07
DNMT1-221ENST00000589538 RIMBP3Q9UFD9 1639 aa28■■■□□ 2.07
DNMT1-221ENST00000589538 ARHGEF11O15085 1522 aa27.99■■■□□ 2.07
DNMT1-221ENST00000589538 TRIM41Q8WV44 630 aa27.95■■■□□ 2.06
DNMT1-221ENST00000589538 IGF1RP08069 1367 aa27.94■■■□□ 2.06
DNMT1-221ENST00000589538 CUL7Q14999 1698 aa27.94■■■□□ 2.06
DNMT1-221ENST00000589538 NUP160Q12769 1436 aa27.92■■■□□ 2.06
DNMT1-221ENST00000589538 CEP170Q5SW79 1584 aa27.86■■■□□ 2.05
DNMT1-221ENST00000589538 CARMIL1Q5VZK9 1371 aa27.8■■■□□ 2.04
DNMT1-221ENST00000589538 ARAP1Q96P48 1450 aa27.75■■■□□ 2.03
DNMT1-221ENST00000589538 SHROOM2Q13796 1616 aa27.71■■■□□ 2.03
DNMT1-221ENST00000589538 CYB5RLQ6IPT4 315 aa27.71■■■□□ 2.03
DNMT1-221ENST00000589538 RUSC2Q8N2Y8 1516 aa27.7■■■□□ 2.02
DNMT1-221ENST00000589538 KIAA0586Q9BVV6 1533 aa27.66■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms