RNA–Protein interactions for RNA: ENST00000589239.5

RFX1-205, Transcript of regulatory factor X1, humanhuman

TSL 2

Gene RFX1, Length 2,122 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1-205ENST00000589239 NISCHQ9Y2I1 1504 aa57.67■■■■■ 6.82
RFX1-205ENST00000589239 CCDC180Q9P1Z9 1646 aa50.59■■■■■ 5.69
RFX1-205ENST00000589239 ABCC9O60706 1549 aa48.58■■■■■ 5.37
RFX1-205ENST00000589239 ZCCHC6Q5VYS8 1495 aaKnown RBP48.3■■■■■ 5.32
RFX1-205ENST00000589239 DCAF8L2P0C7V8 631 aa47.92■■■■■ 5.26
RFX1-205ENST00000589239 DCAF1Q9Y4B6 1507 aa47.66■■■■■ 5.22
RFX1-205ENST00000589239 MYO15BQ96JP2 1530 aa47.37■■■■■ 5.17
RFX1-205ENST00000589239 NACADO15069 1562 aa47.32■■■■■ 5.17
RFX1-205ENST00000589239 RB1CC1Q8TDY2 1594 aa47.1■■■■■ 5.13
RFX1-205ENST00000589239 SHROOM4Q9ULL8 1493 aa46.55■■■■■ 5.04
RFX1-205ENST00000589239 SCRIBQ14160 1630 aa46.47■■■■■ 5.03
RFX1-205ENST00000589239 UNC13AQ9UPW8 1703 aa46.1■■■■■ 4.97
RFX1-205ENST00000589239 BICRAQ9NZM4 1560 aa45.7■■■■■ 4.91
RFX1-205ENST00000589239 PABPN1Q86U42 306 aaKnown RBP eCLIP45.69■■■■■ 4.9
RFX1-205ENST00000589239 CECR2Q9BXF3 1484 aa44.89■■■■■ 4.78
RFX1-205ENST00000589239 BAZ1AQ9NRL2 1556 aaPredicted RBP44.58■■■■■ 4.73
RFX1-205ENST00000589239 MROH2BQ7Z745 1585 aa44.54■■■■■ 4.72
RFX1-205ENST00000589239 SMARCA4P51532 1647 aa44.48■■■■■ 4.71
RFX1-205ENST00000589239 RSF1Q96T23 1441 aaPredicted RBP44.46■■■■■ 4.71
RFX1-205ENST00000589239 SUPT5HO00267 1087 aaKnown RBP44.41■■■■■ 4.7
RFX1-205ENST00000589239 EIF4G1Q04637 1599 aaKnown RBP44.4■■■■■ 4.7
RFX1-205ENST00000589239 WIZO95785 1651 aa44.11■■■■■ 4.65
RFX1-205ENST00000589239 PEG3Q9GZU2 1588 aa43.96■■■■■ 4.63
RFX1-205ENST00000589239 ATAD2BQ9ULI0 1458 aa43.96■■■■■ 4.63
RFX1-205ENST00000589239 CC2D2AQ9P2K1 1620 aa43.93■■■■■ 4.62
RFX1-205ENST00000589239 SMARCA2P51531 1590 aa43.89■■■■■ 4.62
RFX1-205ENST00000589239 NCAPD3P42695 1498 aa43.7■■■■■ 4.59
RFX1-205ENST00000589239 BAZ1BQ9UIG0 1483 aaKnown RBP43.66■■■■■ 4.58
RFX1-205ENST00000589239 TOP2AP11388 1531 aaKnown RBP43.63■■■■■ 4.58
RFX1-205ENST00000589239 HMGXB3Q12766 1538 aa43.56■■■■■ 4.56
RFX1-205ENST00000589239 DNAJC5BQ9UF47 199 aa43.55■■■■■ 4.56
RFX1-205ENST00000589239 CCDC88BA6NC98 1476 aa43.19■■■■■ 4.5
RFX1-205ENST00000589239 CADPSQ9ULU8 1353 aa42.54■■■■■ 4.4
RFX1-205ENST00000589239 CFTRP13569 1480 aa42.53■■■■■ 4.4
RFX1-205ENST00000589239 NESP48681 1621 aa42.42■■■■■ 4.38
RFX1-205ENST00000589239 LAMC3Q9Y6N6 1575 aa42.33■■■■■ 4.37
RFX1-205ENST00000589239 PRDM2Q13029 1718 aa42.19■■■■■ 4.34
RFX1-205ENST00000589239 CHIC1Q5VXU3 224 aa42.1■■■■■ 4.33
RFX1-205ENST00000589239 FANCD2Q9BXW9 1451 aa42.07■■■■■ 4.32
RFX1-205ENST00000589239 ABCC8Q09428 1581 aa42.05■■■■■ 4.32
RFX1-205ENST00000589239 PDS5BQ9NTI5 1447 aa42.04■■■■■ 4.32
RFX1-205ENST00000589239 WRNQ14191 1432 aaPredicted RBP eCLIP41.87■■■■■ 4.29
RFX1-205ENST00000589239 CEP164Q9UPV0 1460 aa41.87■■■■■ 4.29
RFX1-205ENST00000589239 KIF21AQ7Z4S6 1674 aa41.86■■■■■ 4.29
RFX1-205ENST00000589239 TRIM41Q8WV44 630 aa41.81■■■■■ 4.28
RFX1-205ENST00000589239 ERCC6Q03468 1493 aa41.73■■■■■ 4.27
RFX1-205ENST00000589239 SYNJ1O43426 1573 aa41.72■■■■■ 4.27
RFX1-205ENST00000589239 CUX1P39880 1505 aa41.69■■■■■ 4.26
RFX1-205ENST00000589239 TOP2BQ02880 1626 aa41.6■■■■■ 4.25
RFX1-205ENST00000589239 URB2Q14146 1524 aaKnown RBP41.58■■■■■ 4.25
RFX1-205ENST00000589239 BIVM-ERCC5R4GMW8 1640 aa41.55■■■■■ 4.24
RFX1-205ENST00000589239 MRC2Q9UBG0 1479 aa41.54■■■■■ 4.24
RFX1-205ENST00000589239 DNMBPQ6XZF7 1577 aa41.53■■■■■ 4.24
RFX1-205ENST00000589239 TOPBP1Q92547 1522 aa41.52■■■■■ 4.24
RFX1-205ENST00000589239 THOC2Q8NI27 1593 aaKnown RBP41.39■■■■■ 4.22
RFX1-205ENST00000589239 FGD5Q6ZNL6 1462 aa41.36■■■■■ 4.21
RFX1-205ENST00000589239 WDR62O43379 1518 aa41.35■■■■■ 4.21
RFX1-205ENST00000589239 POLA1P09884 1462 aaPredicted RBP41.27■■■■■ 4.2
RFX1-205ENST00000589239 RAD54L2Q9Y4B4 1467 aa41.14■■■■■ 4.18
RFX1-205ENST00000589239 SOGA1O94964 1423 aa41.12■■■■■ 4.17
RFX1-205ENST00000589239 CUX2O14529 1486 aa41.06■■■■■ 4.16
RFX1-205ENST00000589239 FAM9AQ8IZU1 332 aaPredicted RBP41.04■■■■■ 4.16
RFX1-205ENST00000589239 RUSC2Q8N2Y8 1516 aa41.01■■■■■ 4.16
RFX1-205ENST00000589239 ABCA10Q8WWZ4 1543 aa40.96■■■■■ 4.15
RFX1-205ENST00000589239 TARBP1Q13395 1621 aaKnown RBP40.95■■■■■ 4.15
RFX1-205ENST00000589239 IFT140Q96RY7 1462 aa40.91■■■■■ 4.14
RFX1-205ENST00000589239 KIF27Q86VH2 1401 aa40.88■■■■■ 4.13
RFX1-205ENST00000589239 WDR97A6NE52 1622 aa40.86■■■■■ 4.13
RFX1-205ENST00000589239 EEA1Q15075 1411 aa40.83■■■■■ 4.13
RFX1-205ENST00000589239 TDRD9Q8NDG6 1382 aaKnown RBP40.81■■■■■ 4.12
RFX1-205ENST00000589239 ZNF608Q9ULD9 1512 aaPredicted RBP40.74■■■■■ 4.11
RFX1-205ENST00000589239 CSRNP3Q8WYN3 585 aa40.73■■■■■ 4.11
RFX1-205ENST00000589239 AQRO60306 1485 aaKnown RBP eCLIP40.68■■■■■ 4.11e-6■■■■■ 36.5
RFX1-205ENST00000589239 ABCA5Q8WWZ7 1642 aa40.67■■■■■ 4.1
RFX1-205ENST00000589239 GAPVD1Q14C86 1478 aa40.66■■■■■ 4.1
RFX1-205ENST00000589239 IGF1RP08069 1367 aa40.6■■■■■ 4.09
RFX1-205ENST00000589239 EIF4G3O43432 1585 aaKnown RBP40.56■■■■■ 4.08
RFX1-205ENST00000589239 EHMT2Q96KQ7 1210 aa40.51■■■■■ 4.07
RFX1-205ENST00000589239 LOC105371045A0A1W2PR82 267 aa40.48■■■■■ 4.07
RFX1-205ENST00000589239 ERICH3Q5RHP9 1530 aa40.46■■■■■ 4.07
RFX1-205ENST00000589239 GRIN2BQ13224 1484 aa40.45■■■■■ 4.07
RFX1-205ENST00000589239 PBRM1Q86U86 1689 aa40.44■■■■■ 4.06
RFX1-205ENST00000589239 PRXQ9BXM0 1461 aa40.41■■■■■ 4.06
RFX1-205ENST00000589239 CARMIL1Q5VZK9 1371 aa40.38■■■■■ 4.05
RFX1-205ENST00000589239 KIF21BO75037 1637 aa40.34■■■■■ 4.05
RFX1-205ENST00000589239 RAPGEF2Q9Y4G8 1499 aa40.31■■■■■ 4.04
RFX1-205ENST00000589239 CUL7Q14999 1698 aa40.31■■■■■ 4.04
RFX1-205ENST00000589239 SNAPC4Q5SXM2 1469 aa40.28■■■■■ 4.04
RFX1-205ENST00000589239 GOLGA3Q08378 1498 aa40.26■■■■■ 4.04
RFX1-205ENST00000589239 ADAMTS12P58397 1594 aa40.21■■■■■ 4.03
RFX1-205ENST00000589239 FHAD1B1AJZ9 1412 aa40.2■■■■■ 4.03
RFX1-205ENST00000589239 MAGI1Q96QZ7 1491 aaPredicted RBP40.18■■■■■ 4.02
RFX1-205ENST00000589239 UBTFP17480 764 aaKnown RBP40.15■■■■■ 4.02
RFX1-205ENST00000589239 SYNJ2O15056 1496 aa40.04■■■■■ 4
RFX1-205ENST00000589239 FBLN2P98095 1184 aa40.01■■■■■ 4
RFX1-205ENST00000589239 CHMP7Q8WUX9 453 aaPredicted RBP40.01■■■■■ 4
RFX1-205ENST00000589239 TNIKQ9UKE5 1360 aa39.98■■■■□ 3.99
RFX1-205ENST00000589239 GRIN2AQ12879 1464 aa39.96■■■■□ 3.99
RFX1-205ENST00000589239 CHD1O14646 1710 aa39.8■■■■□ 3.96
RFX1-205ENST00000589239 RANGAP1P46060 587 aaPredicted RBP39.76■■■■□ 3.96
Retrieved 100 of 20,778 RNA–protein pairs in 182.3 ms