RNA–Protein interactions for RNA: ENST00000589007.5

RETREG3-207, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 3

Gene RETREG3, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-207ENST00000589007 NISCHQ9Y2I1 1504 aa22.46■■□□□ 1.19
RETREG3-207ENST00000589007 ABCC9O60706 1549 aa20.85■□□□□ 0.93
RETREG3-207ENST00000589007 CCDC180Q9P1Z9 1646 aa20.53■□□□□ 0.88
RETREG3-207ENST00000589007 DNAJC5BQ9UF47 199 aa20.1■□□□□ 0.81
RETREG3-207ENST00000589007 RB1CC1Q8TDY2 1594 aa19.64■□□□□ 0.73
RETREG3-207ENST00000589007 UNC13AQ9UPW8 1703 aa19.51■□□□□ 0.71
RETREG3-207ENST00000589007 NACADO15069 1562 aa19.39■□□□□ 0.69
RETREG3-207ENST00000589007 BICRAQ9NZM4 1560 aa19.32■□□□□ 0.68
RETREG3-207ENST00000589007 PABPN1Q86U42 306 aaKnown RBP eCLIP19.18■□□□□ 0.66
RETREG3-207ENST00000589007 MYO15BQ96JP2 1530 aa19.02■□□□□ 0.64
RETREG3-207ENST00000589007 CC2D2AQ9P2K1 1620 aa18.92■□□□□ 0.62
RETREG3-207ENST00000589007 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
RETREG3-207ENST00000589007 CECR2Q9BXF3 1484 aa18.83■□□□□ 0.6
RETREG3-207ENST00000589007 EIF4G1Q04637 1599 aaKnown RBP18.76■□□□□ 0.59
RETREG3-207ENST00000589007 DNAJC5Q9H3Z4 198 aa18.72■□□□□ 0.59
RETREG3-207ENST00000589007 DCAF8L2P0C7V8 631 aa18.68■□□□□ 0.58
RETREG3-207ENST00000589007 DCAF1Q9Y4B6 1507 aa18.58■□□□□ 0.56
RETREG3-207ENST00000589007 ZCCHC6Q5VYS8 1495 aaKnown RBP18.57■□□□□ 0.56
RETREG3-207ENST00000589007 SCRIBQ14160 1630 aa18.56■□□□□ 0.56
RETREG3-207ENST00000589007 CUX2O14529 1486 aa18.23■□□□□ 0.51
RETREG3-207ENST00000589007 THOC2Q8NI27 1593 aaKnown RBP17.93■□□□□ 0.46
RETREG3-207ENST00000589007 ERCC6Q03468 1493 aa17.91■□□□□ 0.46
RETREG3-207ENST00000589007 NCAPD3P42695 1498 aa17.89■□□□□ 0.45
RETREG3-207ENST00000589007 NESP48681 1621 aa17.84■□□□□ 0.45
RETREG3-207ENST00000589007 HMGXB3Q12766 1538 aa17.8■□□□□ 0.44
RETREG3-207ENST00000589007 ATAD2BQ9ULI0 1458 aa17.78■□□□□ 0.44
RETREG3-207ENST00000589007 KIF21AQ7Z4S6 1674 aa17.71■□□□□ 0.43
RETREG3-207ENST00000589007 SMARCA4P51532 1647 aa17.71■□□□□ 0.43
RETREG3-207ENST00000589007 SMARCA2P51531 1590 aa17.66■□□□□ 0.42
RETREG3-207ENST00000589007 LAMC3Q9Y6N6 1575 aa17.61■□□□□ 0.41
RETREG3-207ENST00000589007 PEG3Q9GZU2 1588 aa17.6■□□□□ 0.41
RETREG3-207ENST00000589007 TRIM41Q8WV44 630 aa17.5■□□□□ 0.39
RETREG3-207ENST00000589007 BAZ1BQ9UIG0 1483 aaKnown RBP17.5■□□□□ 0.39
RETREG3-207ENST00000589007 WDR62O43379 1518 aa17.46■□□□□ 0.39
RETREG3-207ENST00000589007 BAZ1AQ9NRL2 1556 aaPredicted RBP17.45■□□□□ 0.38
RETREG3-207ENST00000589007 MRC2Q9UBG0 1479 aa17.37■□□□□ 0.37
RETREG3-207ENST00000589007 PDS5BQ9NTI5 1447 aa17.34■□□□□ 0.37
RETREG3-207ENST00000589007 MROH2BQ7Z745 1585 aa17.33■□□□□ 0.37
RETREG3-207ENST00000589007 RIMBP3CA6NJZ7 1639 aa17.25■□□□□ 0.35
RETREG3-207ENST00000589007 RIMBP3BA6NNM3 1639 aa17.25■□□□□ 0.35
RETREG3-207ENST00000589007 RIMBP3Q9UFD9 1639 aa17.25■□□□□ 0.35
RETREG3-207ENST00000589007 CADPSQ9ULU8 1353 aa17.23■□□□□ 0.35
RETREG3-207ENST00000589007 CEP164Q9UPV0 1460 aa17.14■□□□□ 0.33
RETREG3-207ENST00000589007 WIZO95785 1651 aa17.13■□□□□ 0.33
RETREG3-207ENST00000589007 URB2Q14146 1524 aaKnown RBP17.1■□□□□ 0.33
RETREG3-207ENST00000589007 FANCD2Q9BXW9 1451 aa17.09■□□□□ 0.33
RETREG3-207ENST00000589007 ARHGEF11O15085 1522 aa17.07■□□□□ 0.32
RETREG3-207ENST00000589007 OSCARQ8IYS5 282 aa17.03■□□□□ 0.32
RETREG3-207ENST00000589007 CFTRP13569 1480 aa17.02■□□□□ 0.32
RETREG3-207ENST00000589007 PRDM2Q13029 1718 aa17.01■□□□□ 0.31
RETREG3-207ENST00000589007 ZNF608Q9ULD9 1512 aaPredicted RBP16.95■□□□□ 0.3
RETREG3-207ENST00000589007 CHD1O14646 1710 aa16.91■□□□□ 0.3
RETREG3-207ENST00000589007 EIF4G3O43432 1585 aaKnown RBP16.9■□□□□ 0.3
RETREG3-207ENST00000589007 ARAP1Q96P48 1450 aa16.9■□□□□ 0.3
RETREG3-207ENST00000589007 TOP2AP11388 1531 aaKnown RBP16.83■□□□□ 0.28
RETREG3-207ENST00000589007 IFT140Q96RY7 1462 aa16.81■□□□□ 0.28
RETREG3-207ENST00000589007 TARBP1Q13395 1621 aaKnown RBP16.78■□□□□ 0.28
RETREG3-207ENST00000589007 TOPBP1Q92547 1522 aa16.76■□□□□ 0.27
RETREG3-207ENST00000589007 RSF1Q96T23 1441 aaPredicted RBP16.71■□□□□ 0.27
RETREG3-207ENST00000589007 CLASP1Q7Z460 1538 aa16.7■□□□□ 0.26
RETREG3-207ENST00000589007 CYB5RLQ6IPT4 315 aa16.68■□□□□ 0.26
RETREG3-207ENST00000589007 DNMBPQ6XZF7 1577 aa16.68■□□□□ 0.26
RETREG3-207ENST00000589007 AQRO60306 1485 aaKnown RBP eCLIP16.61■□□□□ 0.256e-6■■■■□ 23.2
RETREG3-207ENST00000589007 CCDC88BA6NC98 1476 aa16.58■□□□□ 0.24
RETREG3-207ENST00000589007 POLA1P09884 1462 aaPredicted RBP16.56■□□□□ 0.24
RETREG3-207ENST00000589007 TRHP20396 242 aaPredicted RBP16.55■□□□□ 0.24
RETREG3-207ENST00000589007 ABCC8Q09428 1581 aa16.54■□□□□ 0.24
RETREG3-207ENST00000589007 WDR97A6NE52 1622 aa16.51■□□□□ 0.23
RETREG3-207ENST00000589007 SNAPC4Q5SXM2 1469 aa16.48■□□□□ 0.23
RETREG3-207ENST00000589007 RAD54L2Q9Y4B4 1467 aa16.47■□□□□ 0.23
RETREG3-207ENST00000589007 SYNJ1O43426 1573 aa16.46■□□□□ 0.23
RETREG3-207ENST00000589007 PBRM1Q86U86 1689 aa16.41■□□□□ 0.22
RETREG3-207ENST00000589007 KIF13AQ9H1H9 1805 aa16.41■□□□□ 0.22
RETREG3-207ENST00000589007 ERCC6L2Q5T890 1561 aa16.4■□□□□ 0.22
RETREG3-207ENST00000589007 AEBP2Q6ZN18 517 aaPredicted RBP16.4■□□□□ 0.22
RETREG3-207ENST00000589007 MAGI1Q96QZ7 1491 aaPredicted RBP16.4■□□□□ 0.22
RETREG3-207ENST00000589007 GAPVD1Q14C86 1478 aa16.37■□□□□ 0.21
RETREG3-207ENST00000589007 TDRD9Q8NDG6 1382 aaKnown RBP16.36■□□□□ 0.21
RETREG3-207ENST00000589007 SYNJ2O15056 1496 aa16.35■□□□□ 0.21
RETREG3-207ENST00000589007 FGD5Q6ZNL6 1462 aa16.35■□□□□ 0.21
RETREG3-207ENST00000589007 CUX1P39880 1505 aa16.32■□□□□ 0.2
RETREG3-207ENST00000589007 ABCA5Q8WWZ7 1642 aa16.32■□□□□ 0.2
RETREG3-207ENST00000589007 FBLN2P98095 1184 aa16.31■□□□□ 0.2
RETREG3-207ENST00000589007 SOGA1O94964 1423 aa16.3■□□□□ 0.2
RETREG3-207ENST00000589007 GRIN2BQ13224 1484 aa16.29■□□□□ 0.2
RETREG3-207ENST00000589007 SHROOM2Q13796 1616 aa16.28■□□□□ 0.2
RETREG3-207ENST00000589007 CEP170Q5SW79 1584 aa16.24■□□□□ 0.19
RETREG3-207ENST00000589007 ADAMTS12P58397 1594 aa16.2■□□□□ 0.18
RETREG3-207ENST00000589007 NUP160Q12769 1436 aa16.17■□□□□ 0.18
RETREG3-207ENST00000589007 GRIN2AQ12879 1464 aa16.16■□□□□ 0.18
RETREG3-207ENST00000589007 ABCA10Q8WWZ4 1543 aa16.15■□□□□ 0.18
RETREG3-207ENST00000589007 CHMP7Q8WUX9 453 aaPredicted RBP16.15■□□□□ 0.18
RETREG3-207ENST00000589007 DIP2BQ9P265 1576 aa16.11■□□□□ 0.17
RETREG3-207ENST00000589007 MAPKBP1O60336 1514 aa16.04■□□□□ 0.16
RETREG3-207ENST00000589007 ABCC10Q5T3U5 1492 aa16.03■□□□□ 0.16
RETREG3-207ENST00000589007 ADCY10Q96PN6 1610 aa16.02■□□□□ 0.16
RETREG3-207ENST00000589007 KDM4FA0A1W2PPD8 638 aa16.02■□□□□ 0.16
RETREG3-207ENST00000589007 ILDR1Q86SU0 546 aaPredicted RBP16.02■□□□□ 0.16
RETREG3-207ENST00000589007 RUSC2Q8N2Y8 1516 aa16.01■□□□□ 0.15
RETREG3-207ENST00000589007 KDM6BO15054 1643 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms