RNA–Protein interactions for RNA: ENST00000588300.1

ERCC1-206, Transcript of ERCC excision repair 1, endonuclease non-catalytic subunit, humanhuman

TSL 2

Gene ERCC1, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC1-206ENST00000588300 NISCHQ9Y2I1 1504 aa39.9■■■■□ 3.98
ERCC1-206ENST00000588300 CCDC180Q9P1Z9 1646 aa35.85■■■■□ 3.33
ERCC1-206ENST00000588300 ABCC9O60706 1549 aa35.72■■■■□ 3.31
ERCC1-206ENST00000588300 RB1CC1Q8TDY2 1594 aa34.07■■■■□ 3.05
ERCC1-206ENST00000588300 NACADO15069 1562 aa33.85■■■■□ 3.01
ERCC1-206ENST00000588300 DCAF8L2P0C7V8 631 aa33.6■■■□□ 2.97
ERCC1-206ENST00000588300 MYO15BQ96JP2 1530 aa33.39■■■□□ 2.94
ERCC1-206ENST00000588300 DNAJC5BQ9UF47 199 aa33.39■■■□□ 2.94
ERCC1-206ENST00000588300 UNC13AQ9UPW8 1703 aa33.31■■■□□ 2.92
ERCC1-206ENST00000588300 PABPN1Q86U42 306 aaKnown RBP eCLIP33.22■■■□□ 2.91
ERCC1-206ENST00000588300 ZCCHC6Q5VYS8 1495 aaKnown RBP33.09■■■□□ 2.89
ERCC1-206ENST00000588300 BICRAQ9NZM4 1560 aa33.04■■■□□ 2.88
ERCC1-206ENST00000588300 DCAF1Q9Y4B6 1507 aa32.98■■■□□ 2.87
ERCC1-206ENST00000588300 SHROOM4Q9ULL8 1493 aa32.66■■■□□ 2.82
ERCC1-206ENST00000588300 SCRIBQ14160 1630 aa32.62■■■□□ 2.81
ERCC1-206ENST00000588300 CC2D2AQ9P2K1 1620 aa32.29■■■□□ 2.76
ERCC1-206ENST00000588300 EIF4G1Q04637 1599 aaKnown RBP32.24■■■□□ 2.75
ERCC1-206ENST00000588300 CECR2Q9BXF3 1484 aa32.18■■■□□ 2.74
ERCC1-206ENST00000588300 NCAPD3P42695 1498 aa31.21■■■□□ 2.59
ERCC1-206ENST00000588300 SMARCA4P51532 1647 aa31.14■■■□□ 2.58
ERCC1-206ENST00000588300 ATAD2BQ9ULI0 1458 aa31.12■■■□□ 2.57
ERCC1-206ENST00000588300 SMARCA2P51531 1590 aa31.08■■■□□ 2.57
ERCC1-206ENST00000588300 HMGXB3Q12766 1538 aa31.03■■■□□ 2.56
ERCC1-206ENST00000588300 BAZ1AQ9NRL2 1556 aaPredicted RBP30.99■■■□□ 2.55
ERCC1-206ENST00000588300 ERCC6Q03468 1493 aa30.87■■■□□ 2.53
ERCC1-206ENST00000588300 BAZ1BQ9UIG0 1483 aaKnown RBP30.85■■■□□ 2.53
ERCC1-206ENST00000588300 PEG3Q9GZU2 1588 aa30.83■■■□□ 2.53
ERCC1-206ENST00000588300 CUX2O14529 1486 aa30.81■■■□□ 2.52
ERCC1-206ENST00000588300 MROH2BQ7Z745 1585 aa30.73■■■□□ 2.51
ERCC1-206ENST00000588300 NESP48681 1621 aa30.69■■■□□ 2.5
ERCC1-206ENST00000588300 DNAJC5Q9H3Z4 198 aa30.67■■■□□ 2.5
ERCC1-206ENST00000588300 LAMC3Q9Y6N6 1575 aa30.54■■■□□ 2.48
ERCC1-206ENST00000588300 THOC2Q8NI27 1593 aaKnown RBP30.42■■■□□ 2.46
ERCC1-206ENST00000588300 WIZO95785 1651 aa30.38■■■□□ 2.45
ERCC1-206ENST00000588300 KIF21AQ7Z4S6 1674 aa30.36■■■□□ 2.45
ERCC1-206ENST00000588300 PDS5BQ9NTI5 1447 aa30.34■■■□□ 2.45
ERCC1-206ENST00000588300 CADPSQ9ULU8 1353 aa30.26■■■□□ 2.43
ERCC1-206ENST00000588300 RSF1Q96T23 1441 aaPredicted RBP30.1■■■□□ 2.41
ERCC1-206ENST00000588300 MRC2Q9UBG0 1479 aa30.08■■■□□ 2.41
ERCC1-206ENST00000588300 WDR62O43379 1518 aa30.01■■■□□ 2.4
ERCC1-206ENST00000588300 TOP2AP11388 1531 aaKnown RBP30.01■■■□□ 2.4
ERCC1-206ENST00000588300 CEP164Q9UPV0 1460 aa29.98■■■□□ 2.39
ERCC1-206ENST00000588300 CFTRP13569 1480 aa29.93■■■□□ 2.38
ERCC1-206ENST00000588300 FANCD2Q9BXW9 1451 aa29.93■■■□□ 2.38
ERCC1-206ENST00000588300 PRDM2Q13029 1718 aa29.73■■■□□ 2.35
ERCC1-206ENST00000588300 URB2Q14146 1524 aaKnown RBP29.67■■■□□ 2.34
ERCC1-206ENST00000588300 CCDC88BA6NC98 1476 aa29.64■■■□□ 2.34
ERCC1-206ENST00000588300 TOPBP1Q92547 1522 aa29.37■■■□□ 2.29
ERCC1-206ENST00000588300 IFT140Q96RY7 1462 aa29.36■■■□□ 2.29
ERCC1-206ENST00000588300 OSCARQ8IYS5 282 aa29.36■■■□□ 2.29
ERCC1-206ENST00000588300 TRIM41Q8WV44 630 aa29.35■■■□□ 2.29
ERCC1-206ENST00000588300 ABCC8Q09428 1581 aa29.34■■■□□ 2.29
ERCC1-206ENST00000588300 DNMBPQ6XZF7 1577 aa29.29■■■□□ 2.28
ERCC1-206ENST00000588300 ZNF608Q9ULD9 1512 aaPredicted RBP29.29■■■□□ 2.28
ERCC1-206ENST00000588300 EIF4G3O43432 1585 aaKnown RBP29.18■■■□□ 2.26
ERCC1-206ENST00000588300 TARBP1Q13395 1621 aaKnown RBP29.12■■■□□ 2.25
ERCC1-206ENST00000588300 POLA1P09884 1462 aaPredicted RBP29.07■■■□□ 2.24
ERCC1-206ENST00000588300 AQRO60306 1485 aaKnown RBP eCLIP29.02■■■□□ 2.244e-7■■■■□ 26.3
ERCC1-206ENST00000588300 RIMBP3CA6NJZ7 1639 aa29.02■■■□□ 2.24
ERCC1-206ENST00000588300 RIMBP3BA6NNM3 1639 aa29.02■■■□□ 2.24
ERCC1-206ENST00000588300 RIMBP3Q9UFD9 1639 aa29.02■■■□□ 2.24
ERCC1-206ENST00000588300 CHD1O14646 1710 aa28.97■■■□□ 2.23
ERCC1-206ENST00000588300 RAD54L2Q9Y4B4 1467 aa28.94■■■□□ 2.22
ERCC1-206ENST00000588300 SOGA1O94964 1423 aa28.93■■■□□ 2.22
ERCC1-206ENST00000588300 ARHGEF11O15085 1522 aa28.92■■■□□ 2.22
ERCC1-206ENST00000588300 FGD5Q6ZNL6 1462 aa28.9■■■□□ 2.22
ERCC1-206ENST00000588300 CUX1P39880 1505 aa28.88■■■□□ 2.21
ERCC1-206ENST00000588300 WDR97A6NE52 1622 aa28.87■■■□□ 2.21
ERCC1-206ENST00000588300 TDRD9Q8NDG6 1382 aaKnown RBP28.85■■■□□ 2.21
ERCC1-206ENST00000588300 FBLN2P98095 1184 aa28.82■■■□□ 2.2
ERCC1-206ENST00000588300 SUPT5HO00267 1087 aaKnown RBP28.78■■■□□ 2.2
ERCC1-206ENST00000588300 SNAPC4Q5SXM2 1469 aa28.76■■■□□ 2.19
ERCC1-206ENST00000588300 MAGI1Q96QZ7 1491 aaPredicted RBP28.7■■■□□ 2.18
ERCC1-206ENST00000588300 GRIN2BQ13224 1484 aa28.69■■■□□ 2.18
ERCC1-206ENST00000588300 CYB5RLQ6IPT4 315 aa28.65■■■□□ 2.18
ERCC1-206ENST00000588300 CHMP7Q8WUX9 453 aaPredicted RBP28.63■■■□□ 2.17
ERCC1-206ENST00000588300 ARAP1Q96P48 1450 aa28.63■■■□□ 2.17
ERCC1-206ENST00000588300 PBRM1Q86U86 1689 aa28.63■■■□□ 2.17
ERCC1-206ENST00000588300 SYNJ1O43426 1573 aa28.62■■■□□ 2.17
ERCC1-206ENST00000588300 CLASP1Q7Z460 1538 aa28.61■■■□□ 2.17
ERCC1-206ENST00000588300 SYNJ2O15056 1496 aa28.59■■■□□ 2.17
ERCC1-206ENST00000588300 GAPVD1Q14C86 1478 aa28.59■■■□□ 2.17
ERCC1-206ENST00000588300 ABCA10Q8WWZ4 1543 aa28.58■■■□□ 2.17
ERCC1-206ENST00000588300 ABCA5Q8WWZ7 1642 aa28.55■■■□□ 2.16
ERCC1-206ENST00000588300 BIVM-ERCC5R4GMW8 1640 aa28.47■■■□□ 2.15
ERCC1-206ENST00000588300 WRNQ14191 1432 aaPredicted RBP eCLIP28.47■■■□□ 2.15
ERCC1-206ENST00000588300 TOP2BQ02880 1626 aa28.45■■■□□ 2.14
ERCC1-206ENST00000588300 TRHP20396 242 aaPredicted RBP28.34■■■□□ 2.13
ERCC1-206ENST00000588300 ADAMTS12P58397 1594 aa28.33■■■□□ 2.13
ERCC1-206ENST00000588300 GRIN2AQ12879 1464 aa28.33■■■□□ 2.13
ERCC1-206ENST00000588300 ERICH3Q5RHP9 1530 aa28.24■■■□□ 2.11
ERCC1-206ENST00000588300 FHAD1B1AJZ9 1412 aa28.23■■■□□ 2.11
ERCC1-206ENST00000588300 NUP160Q12769 1436 aa28.22■■■□□ 2.11
ERCC1-206ENST00000588300 CEP170Q5SW79 1584 aa28.22■■■□□ 2.11
ERCC1-206ENST00000588300 ERCC6L2Q5T890 1561 aa28.14■■■□□ 2.1
ERCC1-206ENST00000588300 SHROOM2Q13796 1616 aa28.11■■■□□ 2.09
ERCC1-206ENST00000588300 RUSC2Q8N2Y8 1516 aa27.94■■■□□ 2.06
ERCC1-206ENST00000588300 PRG4Q92954 1404 aaPredicted RBP27.93■■■□□ 2.06
ERCC1-206ENST00000588300 JPH4Q96JJ6 628 aa27.9■■■□□ 2.06
ERCC1-206ENST00000588300 KIF27Q86VH2 1401 aa27.88■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 188.7 ms