RNA–Protein interactions for RNA: ENST00000588274.1

CLPTM1-208, Transcript of CLPTM1, transmembrane protein, humanhuman

TSL 2

Gene CLPTM1, Length 805 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1-208ENST00000588274 NISCHQ9Y2I1 1504 aa35.41■■■■□ 3.26
CLPTM1-208ENST00000588274 ABCC9O60706 1549 aa31.99■■■□□ 2.71
CLPTM1-208ENST00000588274 CCDC180Q9P1Z9 1646 aa31.89■■■□□ 2.7
CLPTM1-208ENST00000588274 RB1CC1Q8TDY2 1594 aa30.37■■■□□ 2.45
CLPTM1-208ENST00000588274 DNAJC5BQ9UF47 199 aa30.22■■■□□ 2.43
CLPTM1-208ENST00000588274 NACADO15069 1562 aa30.14■■■□□ 2.42
CLPTM1-208ENST00000588274 UNC13AQ9UPW8 1703 aa29.79■■■□□ 2.36
CLPTM1-208ENST00000588274 MYO15BQ96JP2 1530 aa29.75■■■□□ 2.35
CLPTM1-208ENST00000588274 PABPN1Q86U42 306 aaKnown RBP eCLIP29.68■■■□□ 2.34
CLPTM1-208ENST00000588274 BICRAQ9NZM4 1560 aa29.64■■■□□ 2.33
CLPTM1-208ENST00000588274 DCAF8L2P0C7V8 631 aa29.63■■■□□ 2.33
CLPTM1-208ENST00000588274 ZCCHC6Q5VYS8 1495 aaKnown RBP29.36■■■□□ 2.29
CLPTM1-208ENST00000588274 DCAF1Q9Y4B6 1507 aa29.29■■■□□ 2.28
CLPTM1-208ENST00000588274 SHROOM4Q9ULL8 1493 aa29.17■■■□□ 2.26
CLPTM1-208ENST00000588274 SCRIBQ14160 1630 aa28.99■■■□□ 2.23
CLPTM1-208ENST00000588274 CC2D2AQ9P2K1 1620 aa28.94■■■□□ 2.22
CLPTM1-208ENST00000588274 EIF4G1Q04637 1599 aaKnown RBP28.85■■■□□ 2.21
CLPTM1-208ENST00000588274 CECR2Q9BXF3 1484 aa28.84■■■□□ 2.21
CLPTM1-208ENST00000588274 NCAPD3P42695 1498 aa27.85■■■□□ 2.05
CLPTM1-208ENST00000588274 DNAJC5Q9H3Z4 198 aa27.81■■■□□ 2.04
CLPTM1-208ENST00000588274 ATAD2BQ9ULI0 1458 aa27.74■■■□□ 2.03
CLPTM1-208ENST00000588274 SMARCA4P51532 1647 aa27.68■■■□□ 2.02
CLPTM1-208ENST00000588274 CUX2O14529 1486 aa27.68■■■□□ 2.02
CLPTM1-208ENST00000588274 HMGXB3Q12766 1538 aa27.66■■■□□ 2.02
CLPTM1-208ENST00000588274 SMARCA2P51531 1590 aa27.6■■■□□ 2.01
CLPTM1-208ENST00000588274 ERCC6Q03468 1493 aa27.55■■■□□ 2
CLPTM1-208ENST00000588274 NESP48681 1621 aa27.49■■□□□ 1.99
CLPTM1-208ENST00000588274 PEG3Q9GZU2 1588 aa27.48■■□□□ 1.99
CLPTM1-208ENST00000588274 BAZ1AQ9NRL2 1556 aaPredicted RBP27.48■■□□□ 1.99
CLPTM1-208ENST00000588274 BAZ1BQ9UIG0 1483 aaKnown RBP27.4■■□□□ 1.98
CLPTM1-208ENST00000588274 THOC2Q8NI27 1593 aaKnown RBP27.32■■□□□ 1.96
CLPTM1-208ENST00000588274 MROH2BQ7Z745 1585 aa27.31■■□□□ 1.96
CLPTM1-208ENST00000588274 LAMC3Q9Y6N6 1575 aa27.23■■□□□ 1.95
CLPTM1-208ENST00000588274 KIF21AQ7Z4S6 1674 aa27.12■■□□□ 1.93
CLPTM1-208ENST00000588274 PDS5BQ9NTI5 1447 aa26.99■■□□□ 1.91
CLPTM1-208ENST00000588274 WIZO95785 1651 aa26.94■■□□□ 1.9
CLPTM1-208ENST00000588274 CADPSQ9ULU8 1353 aa26.94■■□□□ 1.9
CLPTM1-208ENST00000588274 WDR62O43379 1518 aa26.86■■□□□ 1.89
CLPTM1-208ENST00000588274 MRC2Q9UBG0 1479 aa26.86■■□□□ 1.89
CLPTM1-208ENST00000588274 CEP164Q9UPV0 1460 aa26.68■■□□□ 1.86
CLPTM1-208ENST00000588274 CFTRP13569 1480 aa26.66■■□□□ 1.86
CLPTM1-208ENST00000588274 FANCD2Q9BXW9 1451 aa26.65■■□□□ 1.86
CLPTM1-208ENST00000588274 RSF1Q96T23 1441 aaPredicted RBP26.65■■□□□ 1.86
CLPTM1-208ENST00000588274 TOP2AP11388 1531 aaKnown RBP26.6■■□□□ 1.85
CLPTM1-208ENST00000588274 URB2Q14146 1524 aaKnown RBP26.51■■□□□ 1.83
CLPTM1-208ENST00000588274 TRIM41Q8WV44 630 aa26.38■■□□□ 1.81
CLPTM1-208ENST00000588274 PRDM2Q13029 1718 aa26.37■■□□□ 1.81
CLPTM1-208ENST00000588274 CCDC88BA6NC98 1476 aa26.26■■□□□ 1.79
CLPTM1-208ENST00000588274 OSCARQ8IYS5 282 aa26.22■■□□□ 1.79
CLPTM1-208ENST00000588274 ZNF608Q9ULD9 1512 aaPredicted RBP26.2■■□□□ 1.79
CLPTM1-208ENST00000588274 IFT140Q96RY7 1462 aa26.17■■□□□ 1.78
CLPTM1-208ENST00000588274 TOPBP1Q92547 1522 aa26.15■■□□□ 1.78
CLPTM1-208ENST00000588274 RIMBP3CA6NJZ7 1639 aa26.08■■□□□ 1.77
CLPTM1-208ENST00000588274 RIMBP3BA6NNM3 1639 aa26.08■■□□□ 1.77
CLPTM1-208ENST00000588274 RIMBP3Q9UFD9 1639 aa26.08■■□□□ 1.77
CLPTM1-208ENST00000588274 EIF4G3O43432 1585 aaKnown RBP26.06■■□□□ 1.76
CLPTM1-208ENST00000588274 DNMBPQ6XZF7 1577 aa26.04■■□□□ 1.76
CLPTM1-208ENST00000588274 TARBP1Q13395 1621 aaKnown RBP25.99■■□□□ 1.75
CLPTM1-208ENST00000588274 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
CLPTM1-208ENST00000588274 ARHGEF11O15085 1522 aa25.98■■□□□ 1.75
CLPTM1-208ENST00000588274 POLA1P09884 1462 aaPredicted RBP25.89■■□□□ 1.73
CLPTM1-208ENST00000588274 AQRO60306 1485 aaKnown RBP eCLIP25.87■■□□□ 1.733e-6■■■■□ 24.7
CLPTM1-208ENST00000588274 CHD1O14646 1710 aa25.87■■□□□ 1.73
CLPTM1-208ENST00000588274 RAD54L2Q9Y4B4 1467 aa25.76■■□□□ 1.71
CLPTM1-208ENST00000588274 ARAP1Q96P48 1450 aa25.74■■□□□ 1.71
CLPTM1-208ENST00000588274 WDR97A6NE52 1622 aa25.68■■□□□ 1.7
CLPTM1-208ENST00000588274 FGD5Q6ZNL6 1462 aa25.67■■□□□ 1.7
CLPTM1-208ENST00000588274 CUX1P39880 1505 aa25.67■■□□□ 1.7
CLPTM1-208ENST00000588274 TDRD9Q8NDG6 1382 aaKnown RBP25.66■■□□□ 1.7
CLPTM1-208ENST00000588274 SOGA1O94964 1423 aa25.65■■□□□ 1.7
CLPTM1-208ENST00000588274 CLASP1Q7Z460 1538 aa25.64■■□□□ 1.7
CLPTM1-208ENST00000588274 SNAPC4Q5SXM2 1469 aa25.63■■□□□ 1.69
CLPTM1-208ENST00000588274 CYB5RLQ6IPT4 315 aa25.61■■□□□ 1.69
CLPTM1-208ENST00000588274 MAGI1Q96QZ7 1491 aaPredicted RBP25.55■■□□□ 1.68
CLPTM1-208ENST00000588274 FBLN2P98095 1184 aa25.54■■□□□ 1.68
CLPTM1-208ENST00000588274 GRIN2BQ13224 1484 aa25.5■■□□□ 1.67
CLPTM1-208ENST00000588274 SYNJ1O43426 1573 aa25.48■■□□□ 1.67
CLPTM1-208ENST00000588274 SYNJ2O15056 1496 aa25.47■■□□□ 1.67
CLPTM1-208ENST00000588274 PBRM1Q86U86 1689 aa25.44■■□□□ 1.66
CLPTM1-208ENST00000588274 ABCA5Q8WWZ7 1642 aa25.43■■□□□ 1.66
CLPTM1-208ENST00000588274 ABCA10Q8WWZ4 1543 aa25.39■■□□□ 1.66
CLPTM1-208ENST00000588274 GAPVD1Q14C86 1478 aa25.38■■□□□ 1.65
CLPTM1-208ENST00000588274 CHMP7Q8WUX9 453 aaPredicted RBP25.36■■□□□ 1.65
CLPTM1-208ENST00000588274 TRHP20396 242 aaPredicted RBP25.31■■□□□ 1.64
CLPTM1-208ENST00000588274 ADAMTS12P58397 1594 aa25.23■■□□□ 1.63
CLPTM1-208ENST00000588274 ERCC6L2Q5T890 1561 aa25.22■■□□□ 1.63
CLPTM1-208ENST00000588274 GRIN2AQ12879 1464 aa25.21■■□□□ 1.63
CLPTM1-208ENST00000588274 BIVM-ERCC5R4GMW8 1640 aa25.21■■□□□ 1.63
CLPTM1-208ENST00000588274 TOP2BQ02880 1626 aa25.19■■□□□ 1.62
CLPTM1-208ENST00000588274 CEP170Q5SW79 1584 aa25.18■■□□□ 1.62
CLPTM1-208ENST00000588274 NUP160Q12769 1436 aa25.18■■□□□ 1.62
CLPTM1-208ENST00000588274 WRNQ14191 1432 aaPredicted RBP eCLIP25.16■■□□□ 1.62
CLPTM1-208ENST00000588274 SHROOM2Q13796 1616 aa25.13■■□□□ 1.61
CLPTM1-208ENST00000588274 SUPT5HO00267 1087 aaKnown RBP25.08■■□□□ 1.61
CLPTM1-208ENST00000588274 ERICH3Q5RHP9 1530 aa25.06■■□□□ 1.6
CLPTM1-208ENST00000588274 FHAD1B1AJZ9 1412 aa25.05■■□□□ 1.6
CLPTM1-208ENST00000588274 RUSC2Q8N2Y8 1516 aa24.9■■□□□ 1.58
CLPTM1-208ENST00000588274 KIF13AQ9H1H9 1805 aa24.85■■□□□ 1.57
CLPTM1-208ENST00000588274 PRG4Q92954 1404 aaPredicted RBP24.85■■□□□ 1.57
CLPTM1-208ENST00000588274 JPH4Q96JJ6 628 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms