RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 NISCHQ9Y2I1 1504 aa28.36■■■□□ 2.13
VPS4B-202ENST00000588059 ABCC9O60706 1549 aa25.91■■□□□ 1.74
VPS4B-202ENST00000588059 CCDC180Q9P1Z9 1646 aa25.65■■□□□ 1.7
VPS4B-202ENST00000588059 DNAJC5BQ9UF47 199 aa24.58■■□□□ 1.53
VPS4B-202ENST00000588059 RB1CC1Q8TDY2 1594 aa24.53■■□□□ 1.52
VPS4B-202ENST00000588059 NACADO15069 1562 aa24.28■■□□□ 1.48
VPS4B-202ENST00000588059 UNC13AQ9UPW8 1703 aa24.05■■□□□ 1.44
VPS4B-202ENST00000588059 PABPN1Q86U42 306 aaKnown RBP eCLIP24.02■■□□□ 1.44
VPS4B-202ENST00000588059 DCAF8L2P0C7V8 631 aa23.96■■□□□ 1.43
VPS4B-202ENST00000588059 BICRAQ9NZM4 1560 aa23.86■■□□□ 1.41
VPS4B-202ENST00000588059 MYO15BQ96JP2 1530 aa23.84■■□□□ 1.41
VPS4B-202ENST00000588059 SHROOM4Q9ULL8 1493 aa23.49■■□□□ 1.35
VPS4B-202ENST00000588059 ZCCHC6Q5VYS8 1495 aaKnown RBP23.45■■□□□ 1.34
VPS4B-202ENST00000588059 CC2D2AQ9P2K1 1620 aa23.42■■□□□ 1.34
VPS4B-202ENST00000588059 DCAF1Q9Y4B6 1507 aa23.41■■□□□ 1.34
VPS4B-202ENST00000588059 CECR2Q9BXF3 1484 aa23.37■■□□□ 1.33
VPS4B-202ENST00000588059 SCRIBQ14160 1630 aa23.32■■□□□ 1.32
VPS4B-202ENST00000588059 EIF4G1Q04637 1599 aaKnown RBP23.28■■□□□ 1.32
VPS4B-202ENST00000588059 DNAJC5Q9H3Z4 198 aa22.8■■□□□ 1.24
VPS4B-202ENST00000588059 CUX2O14529 1486 aa22.48■■□□□ 1.19
VPS4B-202ENST00000588059 NCAPD3P42695 1498 aa22.41■■□□□ 1.18
VPS4B-202ENST00000588059 ERCC6Q03468 1493 aa22.38■■□□□ 1.17
VPS4B-202ENST00000588059 ATAD2BQ9ULI0 1458 aa22.29■■□□□ 1.16
VPS4B-202ENST00000588059 HMGXB3Q12766 1538 aa22.24■■□□□ 1.15
VPS4B-202ENST00000588059 SMARCA2P51531 1590 aa22.22■■□□□ 1.15
VPS4B-202ENST00000588059 SMARCA4P51532 1647 aa22.22■■□□□ 1.15
VPS4B-202ENST00000588059 NESP48681 1621 aa22.17■■□□□ 1.14
VPS4B-202ENST00000588059 THOC2Q8NI27 1593 aaKnown RBP22.07■■□□□ 1.12
VPS4B-202ENST00000588059 BAZ1BQ9UIG0 1483 aaKnown RBP22.06■■□□□ 1.12
VPS4B-202ENST00000588059 BAZ1AQ9NRL2 1556 aaPredicted RBP22.04■■□□□ 1.12
VPS4B-202ENST00000588059 PEG3Q9GZU2 1588 aa22.01■■□□□ 1.11
VPS4B-202ENST00000588059 LAMC3Q9Y6N6 1575 aa21.98■■□□□ 1.11
VPS4B-202ENST00000588059 KIF21AQ7Z4S6 1674 aa21.92■■□□□ 1.1
VPS4B-202ENST00000588059 MROH2BQ7Z745 1585 aa21.85■■□□□ 1.09
VPS4B-202ENST00000588059 PDS5BQ9NTI5 1447 aa21.81■■□□□ 1.08
VPS4B-202ENST00000588059 CADPSQ9ULU8 1353 aa21.69■■□□□ 1.06
VPS4B-202ENST00000588059 MRC2Q9UBG0 1479 aa21.68■■□□□ 1.06
VPS4B-202ENST00000588059 WDR62O43379 1518 aa21.66■■□□□ 1.06
VPS4B-202ENST00000588059 TRIM41Q8WV44 630 aa21.64■■□□□ 1.05
VPS4B-202ENST00000588059 WIZO95785 1651 aa21.59■■□□□ 1.05
VPS4B-202ENST00000588059 CEP164Q9UPV0 1460 aa21.52■■□□□ 1.04
VPS4B-202ENST00000588059 FANCD2Q9BXW9 1451 aa21.46■■□□□ 1.03
VPS4B-202ENST00000588059 CFTRP13569 1480 aa21.39■■□□□ 1.02
VPS4B-202ENST00000588059 URB2Q14146 1524 aaKnown RBP21.33■■□□□ 1
VPS4B-202ENST00000588059 OSCARQ8IYS5 282 aa21.32■■□□□ 1
VPS4B-202ENST00000588059 TOP2AP11388 1531 aaKnown RBP21.29■■□□□ 1
VPS4B-202ENST00000588059 RSF1Q96T23 1441 aaPredicted RBP21.25■□□□□ 0.99
VPS4B-202ENST00000588059 PRDM2Q13029 1718 aa21.24■□□□□ 0.99
VPS4B-202ENST00000588059 RIMBP3CA6NJZ7 1639 aa21.18■□□□□ 0.98
VPS4B-202ENST00000588059 RIMBP3BA6NNM3 1639 aa21.18■□□□□ 0.98
VPS4B-202ENST00000588059 RIMBP3Q9UFD9 1639 aa21.18■□□□□ 0.98
VPS4B-202ENST00000588059 ZNF608Q9ULD9 1512 aaPredicted RBP21.11■□□□□ 0.97
VPS4B-202ENST00000588059 IFT140Q96RY7 1462 aa21.1■□□□□ 0.97
VPS4B-202ENST00000588059 ARHGEF11O15085 1522 aa21.07■□□□□ 0.96
VPS4B-202ENST00000588059 TOPBP1Q92547 1522 aa21.04■□□□□ 0.96
VPS4B-202ENST00000588059 EIF4G3O43432 1585 aaKnown RBP21.02■□□□□ 0.95
VPS4B-202ENST00000588059 CCDC88BA6NC98 1476 aa21.01■□□□□ 0.95
VPS4B-202ENST00000588059 ABCC8Q09428 1581 aa20.93■□□□□ 0.94
VPS4B-202ENST00000588059 DNMBPQ6XZF7 1577 aa20.93■□□□□ 0.94
VPS4B-202ENST00000588059 CHD1O14646 1710 aa20.93■□□□□ 0.94
VPS4B-202ENST00000588059 TARBP1Q13395 1621 aaKnown RBP20.89■□□□□ 0.94
VPS4B-202ENST00000588059 CYB5RLQ6IPT4 315 aa20.85■□□□□ 0.93
VPS4B-202ENST00000588059 AQRO60306 1485 aaKnown RBP eCLIP20.85■□□□□ 0.93
VPS4B-202ENST00000588059 ARAP1Q96P48 1450 aa20.85■□□□□ 0.93
VPS4B-202ENST00000588059 POLA1P09884 1462 aaPredicted RBP20.8■□□□□ 0.92
VPS4B-202ENST00000588059 TRHP20396 242 aaPredicted RBP20.72■□□□□ 0.91
VPS4B-202ENST00000588059 FBLN2P98095 1184 aa20.72■□□□□ 0.91
VPS4B-202ENST00000588059 RAD54L2Q9Y4B4 1467 aa20.71■□□□□ 0.91
VPS4B-202ENST00000588059 CLASP1Q7Z460 1538 aa20.67■□□□□ 0.9
VPS4B-202ENST00000588059 TDRD9Q8NDG6 1382 aaKnown RBP20.66■□□□□ 0.9
VPS4B-202ENST00000588059 SNAPC4Q5SXM2 1469 aa20.66■□□□□ 0.9
VPS4B-202ENST00000588059 WDR97A6NE52 1622 aa20.66■□□□□ 0.9
VPS4B-202ENST00000588059 SOGA1O94964 1423 aa20.65■□□□□ 0.9
VPS4B-202ENST00000588059 FGD5Q6ZNL6 1462 aa20.62■□□□□ 0.89
VPS4B-202ENST00000588059 SYNJ1O43426 1573 aa20.6■□□□□ 0.89
VPS4B-202ENST00000588059 MAGI1Q96QZ7 1491 aaPredicted RBP20.59■□□□□ 0.89
VPS4B-202ENST00000588059 CUX1P39880 1505 aa20.56■□□□□ 0.88
VPS4B-202ENST00000588059 GRIN2BQ13224 1484 aa20.54■□□□□ 0.88
VPS4B-202ENST00000588059 SYNJ2O15056 1496 aa20.52■□□□□ 0.88
VPS4B-202ENST00000588059 CHMP7Q8WUX9 453 aaPredicted RBP20.52■□□□□ 0.88
VPS4B-202ENST00000588059 PBRM1Q86U86 1689 aa20.49■□□□□ 0.87
VPS4B-202ENST00000588059 GAPVD1Q14C86 1478 aa20.43■□□□□ 0.86
VPS4B-202ENST00000588059 ABCA5Q8WWZ7 1642 aa20.4■□□□□ 0.86
VPS4B-202ENST00000588059 ABCA10Q8WWZ4 1543 aa20.37■□□□□ 0.85
VPS4B-202ENST00000588059 AEBP2Q6ZN18 517 aaPredicted RBP20.34■□□□□ 0.85
VPS4B-202ENST00000588059 ERCC6L2Q5T890 1561 aa20.32■□□□□ 0.84
VPS4B-202ENST00000588059 GRIN2AQ12879 1464 aa20.29■□□□□ 0.84
VPS4B-202ENST00000588059 ADAMTS12P58397 1594 aa20.27■□□□□ 0.84
VPS4B-202ENST00000588059 CEP170Q5SW79 1584 aa20.25■□□□□ 0.83
VPS4B-202ENST00000588059 NUP160Q12769 1436 aa20.24■□□□□ 0.83
VPS4B-202ENST00000588059 SHROOM2Q13796 1616 aa20.22■□□□□ 0.83
VPS4B-202ENST00000588059 WRNQ14191 1432 aaPredicted RBP eCLIP20.18■□□□□ 0.82
VPS4B-202ENST00000588059 BIVM-ERCC5R4GMW8 1640 aa20.16■□□□□ 0.82
VPS4B-202ENST00000588059 KIF13AQ9H1H9 1805 aa20.15■□□□□ 0.82
VPS4B-202ENST00000588059 TOP2BQ02880 1626 aa20.14■□□□□ 0.81
VPS4B-202ENST00000588059 FHAD1B1AJZ9 1412 aa20.14■□□□□ 0.81
VPS4B-202ENST00000588059 ERICH3Q5RHP9 1530 aa20.1■□□□□ 0.81
VPS4B-202ENST00000588059 PRG4Q92954 1404 aaPredicted RBP20.03■□□□□ 0.8
VPS4B-202ENST00000588059 RUSC2Q8N2Y8 1516 aa20■□□□□ 0.79
VPS4B-202ENST00000588059 SUPT5HO00267 1087 aaKnown RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms