RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 NISCHQ9Y2I1 1504 aa35.63■■■■□ 3.29
VMP1-206ENST00000587945 ABCC9O60706 1549 aa31.83■■■□□ 2.69
VMP1-206ENST00000587945 CCDC180Q9P1Z9 1646 aa31.75■■■□□ 2.67
VMP1-206ENST00000587945 RB1CC1Q8TDY2 1594 aa30.24■■■□□ 2.43
VMP1-206ENST00000587945 DCAF8L2P0C7V8 631 aa30.18■■■□□ 2.42
VMP1-206ENST00000587945 NACADO15069 1562 aa30.08■■■□□ 2.41
VMP1-206ENST00000587945 DNAJC5BQ9UF47 199 aa29.81■■■□□ 2.36
VMP1-206ENST00000587945 PABPN1Q86U42 306 aaKnown RBP eCLIP29.75■■■□□ 2.35
VMP1-206ENST00000587945 MYO15BQ96JP2 1530 aa29.69■■■□□ 2.34
VMP1-206ENST00000587945 ZCCHC6Q5VYS8 1495 aaKnown RBP29.55■■■□□ 2.32
VMP1-206ENST00000587945 UNC13AQ9UPW8 1703 aa29.45■■■□□ 2.3
VMP1-206ENST00000587945 BICRAQ9NZM4 1560 aa29.39■■■□□ 2.3
VMP1-206ENST00000587945 DCAF1Q9Y4B6 1507 aa29.38■■■□□ 2.29
VMP1-206ENST00000587945 SCRIBQ14160 1630 aa29.09■■■□□ 2.25
VMP1-206ENST00000587945 SHROOM4Q9ULL8 1493 aa28.94■■■□□ 2.22
VMP1-206ENST00000587945 CC2D2AQ9P2K1 1620 aa28.67■■■□□ 2.18
VMP1-206ENST00000587945 EIF4G1Q04637 1599 aaKnown RBP28.65■■■□□ 2.18
VMP1-206ENST00000587945 CECR2Q9BXF3 1484 aa28.63■■■□□ 2.17
VMP1-206ENST00000587945 NCAPD3P42695 1498 aa27.83■■■□□ 2.04
VMP1-206ENST00000587945 ATAD2BQ9ULI0 1458 aa27.78■■■□□ 2.04
VMP1-206ENST00000587945 SMARCA4P51532 1647 aa27.72■■■□□ 2.03
VMP1-206ENST00000587945 SMARCA2P51531 1590 aa27.65■■■□□ 2.02
VMP1-206ENST00000587945 BAZ1AQ9NRL2 1556 aaPredicted RBP27.61■■■□□ 2.01
VMP1-206ENST00000587945 HMGXB3Q12766 1538 aa27.57■■■□□ 2
VMP1-206ENST00000587945 BAZ1BQ9UIG0 1483 aaKnown RBP27.5■■□□□ 1.99
VMP1-206ENST00000587945 MROH2BQ7Z745 1585 aa27.49■■□□□ 1.99
VMP1-206ENST00000587945 ERCC6Q03468 1493 aa27.44■■□□□ 1.98
VMP1-206ENST00000587945 PEG3Q9GZU2 1588 aa27.43■■□□□ 1.98
VMP1-206ENST00000587945 NESP48681 1621 aa27.38■■□□□ 1.97
VMP1-206ENST00000587945 CUX2O14529 1486 aa27.29■■□□□ 1.96
VMP1-206ENST00000587945 DNAJC5Q9H3Z4 198 aa27.19■■□□□ 1.94
VMP1-206ENST00000587945 WIZO95785 1651 aa27.11■■□□□ 1.93
VMP1-206ENST00000587945 LAMC3Q9Y6N6 1575 aa27.09■■□□□ 1.93
VMP1-206ENST00000587945 PDS5BQ9NTI5 1447 aa27.02■■□□□ 1.92
VMP1-206ENST00000587945 CADPSQ9ULU8 1353 aa27.02■■□□□ 1.92
VMP1-206ENST00000587945 RSF1Q96T23 1441 aaPredicted RBP27■■□□□ 1.91
VMP1-206ENST00000587945 THOC2Q8NI27 1593 aaKnown RBP26.97■■□□□ 1.91
VMP1-206ENST00000587945 KIF21AQ7Z4S6 1674 aa26.89■■□□□ 1.9
VMP1-206ENST00000587945 TOP2AP11388 1531 aaKnown RBP26.79■■□□□ 1.88
VMP1-206ENST00000587945 MRC2Q9UBG0 1479 aa26.76■■□□□ 1.87
VMP1-206ENST00000587945 CFTRP13569 1480 aa26.72■■□□□ 1.87
VMP1-206ENST00000587945 FANCD2Q9BXW9 1451 aa26.7■■□□□ 1.87
VMP1-206ENST00000587945 CEP164Q9UPV0 1460 aa26.68■■□□□ 1.86
VMP1-206ENST00000587945 WDR62O43379 1518 aa26.66■■□□□ 1.86
VMP1-206ENST00000587945 CCDC88BA6NC98 1476 aa26.55■■□□□ 1.84
VMP1-206ENST00000587945 URB2Q14146 1524 aaKnown RBP26.47■■□□□ 1.83
VMP1-206ENST00000587945 PRDM2Q13029 1718 aa26.23■■□□□ 1.79
VMP1-206ENST00000587945 TOPBP1Q92547 1522 aa26.19■■□□□ 1.78
VMP1-206ENST00000587945 OSCARQ8IYS5 282 aa26.16■■□□□ 1.78
VMP1-206ENST00000587945 IFT140Q96RY7 1462 aa26.16■■□□□ 1.78
VMP1-206ENST00000587945 ZNF608Q9ULD9 1512 aaPredicted RBP26.14■■□□□ 1.78
VMP1-206ENST00000587945 TRIM41Q8WV44 630 aa26.13■■□□□ 1.77
VMP1-206ENST00000587945 ABCC8Q09428 1581 aa26.1■■□□□ 1.77
VMP1-206ENST00000587945 DNMBPQ6XZF7 1577 aa26.07■■□□□ 1.76
VMP1-206ENST00000587945 SUPT5HO00267 1087 aaKnown RBP26.02■■□□□ 1.76
VMP1-206ENST00000587945 AQRO60306 1485 aaKnown RBP eCLIP25.95■■□□□ 1.74
VMP1-206ENST00000587945 POLA1P09884 1462 aaPredicted RBP25.95■■□□□ 1.74
VMP1-206ENST00000587945 RAD54L2Q9Y4B4 1467 aa25.91■■□□□ 1.74
VMP1-206ENST00000587945 EIF4G3O43432 1585 aaKnown RBP25.9■■□□□ 1.74
VMP1-206ENST00000587945 TARBP1Q13395 1621 aaKnown RBP25.9■■□□□ 1.74
VMP1-206ENST00000587945 SOGA1O94964 1423 aa25.87■■□□□ 1.73
VMP1-206ENST00000587945 TDRD9Q8NDG6 1382 aaKnown RBP25.83■■□□□ 1.73
VMP1-206ENST00000587945 FGD5Q6ZNL6 1462 aa25.81■■□□□ 1.72
VMP1-206ENST00000587945 CUX1P39880 1505 aa25.81■■□□□ 1.72
VMP1-206ENST00000587945 FBLN2P98095 1184 aa25.8■■□□□ 1.72
VMP1-206ENST00000587945 RIMBP3CA6NJZ7 1639 aa25.7■■□□□ 1.7
VMP1-206ENST00000587945 RIMBP3BA6NNM3 1639 aa25.7■■□□□ 1.7
VMP1-206ENST00000587945 RIMBP3Q9UFD9 1639 aa25.7■■□□□ 1.7
VMP1-206ENST00000587945 ARHGEF11O15085 1522 aa25.68■■□□□ 1.7
VMP1-206ENST00000587945 SNAPC4Q5SXM2 1469 aa25.66■■□□□ 1.7
VMP1-206ENST00000587945 CHD1O14646 1710 aa25.63■■□□□ 1.69
VMP1-206ENST00000587945 CHMP7Q8WUX9 453 aaPredicted RBP25.6■■□□□ 1.69
VMP1-206ENST00000587945 CYB5RLQ6IPT4 315 aa25.59■■□□□ 1.69
VMP1-206ENST00000587945 GRIN2BQ13224 1484 aa25.59■■□□□ 1.69
VMP1-206ENST00000587945 WDR97A6NE52 1622 aa25.57■■□□□ 1.68
VMP1-206ENST00000587945 MAGI1Q96QZ7 1491 aaPredicted RBP25.54■■□□□ 1.68
VMP1-206ENST00000587945 GAPVD1Q14C86 1478 aa25.53■■□□□ 1.68
VMP1-206ENST00000587945 ABCA10Q8WWZ4 1543 aa25.5■■□□□ 1.67
VMP1-206ENST00000587945 SYNJ2O15056 1496 aa25.47■■□□□ 1.67
VMP1-206ENST00000587945 WRNQ14191 1432 aaPredicted RBP eCLIP25.46■■□□□ 1.67
VMP1-206ENST00000587945 ARAP1Q96P48 1450 aa25.46■■□□□ 1.67
VMP1-206ENST00000587945 CLASP1Q7Z460 1538 aa25.42■■□□□ 1.66
VMP1-206ENST00000587945 ABCA5Q8WWZ7 1642 aa25.4■■□□□ 1.66
VMP1-206ENST00000587945 SYNJ1O43426 1573 aa25.39■■□□□ 1.66
VMP1-206ENST00000587945 TOP2BQ02880 1626 aa25.37■■□□□ 1.65
VMP1-206ENST00000587945 PBRM1Q86U86 1689 aa25.37■■□□□ 1.65
VMP1-206ENST00000587945 BIVM-ERCC5R4GMW8 1640 aa25.34■■□□□ 1.65
VMP1-206ENST00000587945 TRHP20396 242 aaPredicted RBP25.25■■□□□ 1.63
VMP1-206ENST00000587945 GRIN2AQ12879 1464 aa25.25■■□□□ 1.63
VMP1-206ENST00000587945 FHAD1B1AJZ9 1412 aa25.21■■□□□ 1.63
VMP1-206ENST00000587945 ADAMTS12P58397 1594 aa25.21■■□□□ 1.63
VMP1-206ENST00000587945 NUP160Q12769 1436 aa25.17■■□□□ 1.62
VMP1-206ENST00000587945 ERICH3Q5RHP9 1530 aa25.16■■□□□ 1.62
VMP1-206ENST00000587945 CEP170Q5SW79 1584 aa25.14■■□□□ 1.62
VMP1-206ENST00000587945 ERCC6L2Q5T890 1561 aa25.1■■□□□ 1.61
VMP1-206ENST00000587945 IGF1RP08069 1367 aa24.98■■□□□ 1.59
VMP1-206ENST00000587945 JPH4Q96JJ6 628 aa24.98■■□□□ 1.59
VMP1-206ENST00000587945 KIF27Q86VH2 1401 aa24.96■■□□□ 1.59
VMP1-206ENST00000587945 PRG4Q92954 1404 aaPredicted RBP24.95■■□□□ 1.59
VMP1-206ENST00000587945 SHROOM2Q13796 1616 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms