RNA–Protein interactions for RNA: ENST00000587904.5

LINC01539-201, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 2 BASIC

Gene LINC01539, Length 2,068 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-201ENST00000587904 NISCHQ9Y2I1 1504 aa21.12■□□□□ 0.97
LINC01539-201ENST00000587904 CCDC180Q9P1Z9 1646 aa18.41■□□□□ 0.54
LINC01539-201ENST00000587904 ZCCHC6Q5VYS8 1495 aaKnown RBP17.81■□□□□ 0.44
LINC01539-201ENST00000587904 DCAF1Q9Y4B6 1507 aa17.54■□□□□ 0.4
LINC01539-201ENST00000587904 MYO15BQ96JP2 1530 aa17.28■□□□□ 0.36
LINC01539-201ENST00000587904 SHROOM4Q9ULL8 1493 aa17.22■□□□□ 0.35
LINC01539-201ENST00000587904 DCAF8L2P0C7V8 631 aa17.22■□□□□ 0.35
LINC01539-201ENST00000587904 ABCC9O60706 1549 aa17.1■□□□□ 0.33
LINC01539-201ENST00000587904 NACADO15069 1562 aa17.07■□□□□ 0.32
LINC01539-201ENST00000587904 RB1CC1Q8TDY2 1594 aa16.87■□□□□ 0.29
LINC01539-201ENST00000587904 SCRIBQ14160 1630 aa16.85■□□□□ 0.29
LINC01539-201ENST00000587904 SUPT5HO00267 1087 aaKnown RBP16.66■□□□□ 0.26
LINC01539-201ENST00000587904 PELP1Q8IZL8 1130 aaKnown RBP16.52■□□□□ 0.23
LINC01539-201ENST00000587904 UNC13AQ9UPW8 1703 aa16.5■□□□□ 0.23
LINC01539-201ENST00000587904 RSF1Q96T23 1441 aaPredicted RBP16.43■□□□□ 0.22
LINC01539-201ENST00000587904 CECR2Q9BXF3 1484 aa16.33■□□□□ 0.2
LINC01539-201ENST00000587904 BAZ1AQ9NRL2 1556 aaPredicted RBP16.33■□□□□ 0.2
LINC01539-201ENST00000587904 BICRAQ9NZM4 1560 aa16.32■□□□□ 0.2
LINC01539-201ENST00000587904 MROH2BQ7Z745 1585 aa16.29■□□□□ 0.2
LINC01539-201ENST00000587904 MYT1Q01538 1121 aa16.23■□□□□ 0.19
LINC01539-201ENST00000587904 SMARCA4P51532 1647 aa16.21■□□□□ 0.19
LINC01539-201ENST00000587904 WIZO95785 1651 aa16.16■□□□□ 0.18
LINC01539-201ENST00000587904 PABPN1Q86U42 306 aaKnown RBP eCLIP16.1■□□□□ 0.17
LINC01539-201ENST00000587904 CHIC1Q5VXU3 224 aa16.09■□□□□ 0.17
LINC01539-201ENST00000587904 TOP2AP11388 1531 aaKnown RBP16.06■□□□□ 0.16
LINC01539-201ENST00000587904 PEG3Q9GZU2 1588 aa16.05■□□□□ 0.16
LINC01539-201ENST00000587904 SMARCA2P51531 1590 aa15.92■□□□□ 0.14
LINC01539-201ENST00000587904 DNAJC5BQ9UF47 199 aa15.91■□□□□ 0.14
LINC01539-201ENST00000587904 ATAD2BQ9ULI0 1458 aa15.87■□□□□ 0.13
LINC01539-201ENST00000587904 EIF4G1Q04637 1599 aaKnown RBP15.87■□□□□ 0.13
LINC01539-201ENST00000587904 CCDC88BA6NC98 1476 aa15.84■□□□□ 0.13
LINC01539-201ENST00000587904 BAZ1BQ9UIG0 1483 aaKnown RBP15.81■□□□□ 0.12
LINC01539-201ENST00000587904 HMGXB3Q12766 1538 aa15.76■□□□□ 0.11
LINC01539-201ENST00000587904 NCAPD3P42695 1498 aa15.73■□□□□ 0.11
LINC01539-201ENST00000587904 TRIM41Q8WV44 630 aa15.71■□□□□ 0.11
LINC01539-201ENST00000587904 HRCP23327 699 aa15.65■□□□□ 0.1
LINC01539-201ENST00000587904 ABCC8Q09428 1581 aa15.55■□□□□ 0.08
LINC01539-201ENST00000587904 TTBK1Q5TCY1 1321 aaPredicted RBP15.54■□□□□ 0.08
LINC01539-201ENST00000587904 CC2D2AQ9P2K1 1620 aa15.52■□□□□ 0.07
LINC01539-201ENST00000587904 AEBP2Q6ZN18 517 aaPredicted RBP15.48■□□□□ 0.07
LINC01539-201ENST00000587904 WRNQ14191 1432 aaPredicted RBP eCLIP15.48■□□□□ 0.07
LINC01539-201ENST00000587904 CFTRP13569 1480 aa15.42■□□□□ 0.06
LINC01539-201ENST00000587904 EEA1Q15075 1411 aa15.42■□□□□ 0.06
LINC01539-201ENST00000587904 PRDM2Q13029 1718 aa15.42■□□□□ 0.06
LINC01539-201ENST00000587904 LOC105371045A0A1W2PR82 267 aa15.41■□□□□ 0.06
LINC01539-201ENST00000587904 SYNJ1O43426 1573 aa15.4■□□□□ 0.06
LINC01539-201ENST00000587904 TOP2BQ02880 1626 aa15.36■□□□□ 0.05
LINC01539-201ENST00000587904 BIVM-ERCC5R4GMW8 1640 aa15.36■□□□□ 0.05
LINC01539-201ENST00000587904 FAM9AQ8IZU1 332 aaPredicted RBP15.35■□□□□ 0.05
LINC01539-201ENST00000587904 CADPSQ9ULU8 1353 aa15.31■□□□□ 0.04
LINC01539-201ENST00000587904 SOGA1O94964 1423 aa15.28■□□□□ 0.04
LINC01539-201ENST00000587904 CUX1P39880 1505 aa15.23■□□□□ 0.03
LINC01539-201ENST00000587904 CSRNP3Q8WYN3 585 aa15.21■□□□□ 0.03
LINC01539-201ENST00000587904 KIF21BO75037 1637 aa15.19■□□□□ 0.02
LINC01539-201ENST00000587904 LAMC3Q9Y6N6 1575 aa15.19■□□□□ 0.02
LINC01539-201ENST00000587904 RUSC2Q8N2Y8 1516 aa15.19■□□□□ 0.02
LINC01539-201ENST00000587904 GOLGA3Q08378 1498 aa15.17■□□□□ 0.02
LINC01539-201ENST00000587904 CEP164Q9UPV0 1460 aa15.16■□□□□ 0.02
LINC01539-201ENST00000587904 FANCD2Q9BXW9 1451 aa15.15■□□□□ 0.02
LINC01539-201ENST00000587904 TNIKQ9UKE5 1360 aa15.14■□□□□ 0.01
LINC01539-201ENST00000587904 SCAF1Q9H7N4 1312 aaKnown RBP15.11■□□□□ 0.01
LINC01539-201ENST00000587904 DNMBPQ6XZF7 1577 aa15.08■□□□□ 0
LINC01539-201ENST00000587904 KIF27Q86VH2 1401 aa15.08■□□□□ 0
LINC01539-201ENST00000587904 ERICH3Q5RHP9 1530 aa15.07■□□□□ 0
LINC01539-201ENST00000587904 EHMT2Q96KQ7 1210 aa15.07■□□□□ 0
LINC01539-201ENST00000587904 CEP162Q5TB80 1403 aa15.06■□□□□ 0
LINC01539-201ENST00000587904 NESP48681 1621 aa15.06■□□□□ 0
LINC01539-201ENST00000587904 FGD5Q6ZNL6 1462 aa15.04■□□□□ -0
LINC01539-201ENST00000587904 PDS5BQ9NTI5 1447 aa15.04■□□□□ -0
LINC01539-201ENST00000587904 PRXQ9BXM0 1461 aa15.03■□□□□ -0
LINC01539-201ENST00000587904 TOPBP1Q92547 1522 aa15.01□□□□□ -0.01
LINC01539-201ENST00000587904 UBTFP17480 764 aaKnown RBP15□□□□□ -0.01
LINC01539-201ENST00000587904 RAPGEF2Q9Y4G8 1499 aa14.99□□□□□ -0.01
LINC01539-201ENST00000587904 PPARGC1BQ86YN6 1023 aaKnown RBP14.97□□□□□ -0.01
LINC01539-201ENST00000587904 CUX2O14529 1486 aa14.97□□□□□ -0.01
LINC01539-201ENST00000587904 TRIM26Q12899 539 aaPredicted RBP14.96□□□□□ -0.01
LINC01539-201ENST00000587904 ABCA10Q8WWZ4 1543 aa14.94□□□□□ -0.02
LINC01539-201ENST00000587904 POLA1P09884 1462 aaPredicted RBP14.94□□□□□ -0.02
LINC01539-201ENST00000587904 KIF21AQ7Z4S6 1674 aa14.94□□□□□ -0.02
LINC01539-201ENST00000587904 URB2Q14146 1524 aaKnown RBP14.93□□□□□ -0.02
LINC01539-201ENST00000587904 PCGF6Q9BYE7 350 aa14.93□□□□□ -0.02
LINC01539-201ENST00000587904 CLIP1P30622 1438 aa14.9□□□□□ -0.02
LINC01539-201ENST00000587904 WDR97A6NE52 1622 aa14.9□□□□□ -0.02
LINC01539-201ENST00000587904 IGF1RP08069 1367 aa14.88□□□□□ -0.03
LINC01539-201ENST00000587904 CUL7Q14999 1698 aa14.85□□□□□ -0.03
LINC01539-201ENST00000587904 RAD54L2Q9Y4B4 1467 aa14.85□□□□□ -0.03
LINC01539-201ENST00000587904 MRC2Q9UBG0 1479 aa14.84□□□□□ -0.03
LINC01539-201ENST00000587904 VPS8Q8N3P4 1428 aa14.83□□□□□ -0.04
LINC01539-201ENST00000587904 CARMIL1Q5VZK9 1371 aa14.82□□□□□ -0.04
LINC01539-201ENST00000587904 ABCA5Q8WWZ7 1642 aa14.82□□□□□ -0.04
LINC01539-201ENST00000587904 TARBP1Q13395 1621 aaKnown RBP14.78□□□□□ -0.04
LINC01539-201ENST00000587904 WDR62O43379 1518 aa14.77□□□□□ -0.05
LINC01539-201ENST00000587904 GAPVD1Q14C86 1478 aa14.74□□□□□ -0.05
LINC01539-201ENST00000587904 ARAP1Q96P48 1450 aa14.73□□□□□ -0.05
LINC01539-201ENST00000587904 PRKCSHP14314 528 aaPredicted RBP14.72□□□□□ -0.05
LINC01539-201ENST00000587904 ARHGAP35Q9NRY4 1499 aa14.7□□□□□ -0.06
LINC01539-201ENST00000587904 IFT140Q96RY7 1462 aa14.69□□□□□ -0.06
LINC01539-201ENST00000587904 CTTNBP2Q8WZ74 1663 aa14.69□□□□□ -0.06
LINC01539-201ENST00000587904 ERCC6Q03468 1493 aa14.68□□□□□ -0.06
LINC01539-201ENST00000587904 TDRD9Q8NDG6 1382 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms