RNA–Protein interactions for RNA: ENST00000587888.5

ERCC1-205, Transcript of ERCC excision repair 1, endonuclease non-catalytic subunit, humanhuman

TSL 5

Gene ERCC1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC1-205ENST00000587888 NISCHQ9Y2I1 1504 aa35.35■■■■□ 3.25
ERCC1-205ENST00000587888 ABCC9O60706 1549 aa31.85■■■□□ 2.69
ERCC1-205ENST00000587888 CCDC180Q9P1Z9 1646 aa31.65■■■□□ 2.66
ERCC1-205ENST00000587888 RB1CC1Q8TDY2 1594 aa30.21■■■□□ 2.43
ERCC1-205ENST00000587888 DCAF8L2P0C7V8 631 aa30.11■■■□□ 2.41
ERCC1-205ENST00000587888 NACADO15069 1562 aa29.98■■■□□ 2.39
ERCC1-205ENST00000587888 DNAJC5BQ9UF47 199 aa29.97■■■□□ 2.39
ERCC1-205ENST00000587888 PABPN1Q86U42 306 aaKnown RBP eCLIP29.74■■■□□ 2.35
ERCC1-205ENST00000587888 UNC13AQ9UPW8 1703 aa29.52■■■□□ 2.32
ERCC1-205ENST00000587888 MYO15BQ96JP2 1530 aa29.5■■■□□ 2.31
ERCC1-205ENST00000587888 BICRAQ9NZM4 1560 aa29.33■■■□□ 2.29
ERCC1-205ENST00000587888 ZCCHC6Q5VYS8 1495 aaKnown RBP29.24■■■□□ 2.27
ERCC1-205ENST00000587888 DCAF1Q9Y4B6 1507 aa29.12■■■□□ 2.25
ERCC1-205ENST00000587888 SCRIBQ14160 1630 aa28.95■■■□□ 2.23
ERCC1-205ENST00000587888 SHROOM4Q9ULL8 1493 aa28.84■■■□□ 2.21
ERCC1-205ENST00000587888 CC2D2AQ9P2K1 1620 aa28.71■■■□□ 2.19
ERCC1-205ENST00000587888 CECR2Q9BXF3 1484 aa28.66■■■□□ 2.18
ERCC1-205ENST00000587888 EIF4G1Q04637 1599 aaKnown RBP28.62■■■□□ 2.17
ERCC1-205ENST00000587888 NCAPD3P42695 1498 aa27.7■■■□□ 2.03
ERCC1-205ENST00000587888 ATAD2BQ9ULI0 1458 aa27.63■■■□□ 2.01
ERCC1-205ENST00000587888 SMARCA4P51532 1647 aa27.56■■■□□ 2
ERCC1-205ENST00000587888 DNAJC5Q9H3Z4 198 aa27.52■■■□□ 2
ERCC1-205ENST00000587888 SMARCA2P51531 1590 aa27.52■■■□□ 2
ERCC1-205ENST00000587888 ERCC6Q03468 1493 aa27.5■■□□□ 1.99
ERCC1-205ENST00000587888 HMGXB3Q12766 1538 aa27.44■■□□□ 1.98
ERCC1-205ENST00000587888 BAZ1AQ9NRL2 1556 aaPredicted RBP27.43■■□□□ 1.98
ERCC1-205ENST00000587888 CUX2O14529 1486 aa27.38■■□□□ 1.97
ERCC1-205ENST00000587888 BAZ1BQ9UIG0 1483 aaKnown RBP27.38■■□□□ 1.97
ERCC1-205ENST00000587888 NESP48681 1621 aa27.34■■□□□ 1.97
ERCC1-205ENST00000587888 MROH2BQ7Z745 1585 aa27.27■■□□□ 1.96
ERCC1-205ENST00000587888 PEG3Q9GZU2 1588 aa27.25■■□□□ 1.95
ERCC1-205ENST00000587888 LAMC3Q9Y6N6 1575 aa27.06■■□□□ 1.92
ERCC1-205ENST00000587888 THOC2Q8NI27 1593 aaKnown RBP26.97■■□□□ 1.91
ERCC1-205ENST00000587888 PDS5BQ9NTI5 1447 aa26.96■■□□□ 1.91
ERCC1-205ENST00000587888 WIZO95785 1651 aa26.95■■□□□ 1.9
ERCC1-205ENST00000587888 KIF21AQ7Z4S6 1674 aa26.93■■□□□ 1.9
ERCC1-205ENST00000587888 CADPSQ9ULU8 1353 aa26.9■■□□□ 1.9
ERCC1-205ENST00000587888 MRC2Q9UBG0 1479 aa26.71■■□□□ 1.87
ERCC1-205ENST00000587888 RSF1Q96T23 1441 aaPredicted RBP26.7■■□□□ 1.86
ERCC1-205ENST00000587888 WDR62O43379 1518 aa26.6■■□□□ 1.85
ERCC1-205ENST00000587888 CEP164Q9UPV0 1460 aa26.6■■□□□ 1.85
ERCC1-205ENST00000587888 FANCD2Q9BXW9 1451 aa26.59■■□□□ 1.85
ERCC1-205ENST00000587888 CFTRP13569 1480 aa26.55■■□□□ 1.84
ERCC1-205ENST00000587888 TOP2AP11388 1531 aaKnown RBP26.55■■□□□ 1.84
ERCC1-205ENST00000587888 TRIM41Q8WV44 630 aa26.38■■□□□ 1.81
ERCC1-205ENST00000587888 URB2Q14146 1524 aaKnown RBP26.36■■□□□ 1.81
ERCC1-205ENST00000587888 CCDC88BA6NC98 1476 aa26.32■■□□□ 1.8
ERCC1-205ENST00000587888 OSCARQ8IYS5 282 aa26.26■■□□□ 1.79
ERCC1-205ENST00000587888 PRDM2Q13029 1718 aa26.22■■□□□ 1.79
ERCC1-205ENST00000587888 IFT140Q96RY7 1462 aa26.07■■□□□ 1.76
ERCC1-205ENST00000587888 TOPBP1Q92547 1522 aa26.07■■□□□ 1.76
ERCC1-205ENST00000587888 ZNF608Q9ULD9 1512 aaPredicted RBP26.07■■□□□ 1.76
ERCC1-205ENST00000587888 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
ERCC1-205ENST00000587888 DNMBPQ6XZF7 1577 aa25.94■■□□□ 1.74
ERCC1-205ENST00000587888 EIF4G3O43432 1585 aaKnown RBP25.86■■□□□ 1.73
ERCC1-205ENST00000587888 AQRO60306 1485 aaKnown RBP eCLIP25.86■■□□□ 1.731e-18■■■■■ 53.6
ERCC1-205ENST00000587888 RIMBP3CA6NJZ7 1639 aa25.82■■□□□ 1.72
ERCC1-205ENST00000587888 RIMBP3BA6NNM3 1639 aa25.82■■□□□ 1.72
ERCC1-205ENST00000587888 RIMBP3Q9UFD9 1639 aa25.82■■□□□ 1.72
ERCC1-205ENST00000587888 TARBP1Q13395 1621 aaKnown RBP25.81■■□□□ 1.72
ERCC1-205ENST00000587888 FBLN2P98095 1184 aa25.8■■□□□ 1.72
ERCC1-205ENST00000587888 POLA1P09884 1462 aaPredicted RBP25.79■■□□□ 1.72
ERCC1-205ENST00000587888 RAD54L2Q9Y4B4 1467 aa25.76■■□□□ 1.71
ERCC1-205ENST00000587888 SOGA1O94964 1423 aa25.74■■□□□ 1.71
ERCC1-205ENST00000587888 ARHGEF11O15085 1522 aa25.73■■□□□ 1.71
ERCC1-205ENST00000587888 TDRD9Q8NDG6 1382 aaKnown RBP25.72■■□□□ 1.71
ERCC1-205ENST00000587888 CHD1O14646 1710 aa25.7■■□□□ 1.7
ERCC1-205ENST00000587888 CYB5RLQ6IPT4 315 aa25.68■■□□□ 1.7
ERCC1-205ENST00000587888 SUPT5HO00267 1087 aaKnown RBP25.66■■□□□ 1.7
ERCC1-205ENST00000587888 FGD5Q6ZNL6 1462 aa25.65■■□□□ 1.7
ERCC1-205ENST00000587888 CUX1P39880 1505 aa25.61■■□□□ 1.69
ERCC1-205ENST00000587888 CHMP7Q8WUX9 453 aaPredicted RBP25.56■■□□□ 1.68
ERCC1-205ENST00000587888 SNAPC4Q5SXM2 1469 aa25.55■■□□□ 1.68
ERCC1-205ENST00000587888 ARAP1Q96P48 1450 aa25.48■■□□□ 1.67
ERCC1-205ENST00000587888 WDR97A6NE52 1622 aa25.48■■□□□ 1.67
ERCC1-205ENST00000587888 GRIN2BQ13224 1484 aa25.47■■□□□ 1.67
ERCC1-205ENST00000587888 TRHP20396 242 aaPredicted RBP25.45■■□□□ 1.66
ERCC1-205ENST00000587888 MAGI1Q96QZ7 1491 aaPredicted RBP25.44■■□□□ 1.66
ERCC1-205ENST00000587888 GAPVD1Q14C86 1478 aa25.39■■□□□ 1.65
ERCC1-205ENST00000587888 SYNJ2O15056 1496 aa25.38■■□□□ 1.65
ERCC1-205ENST00000587888 SYNJ1O43426 1573 aa25.38■■□□□ 1.65
ERCC1-205ENST00000587888 CLASP1Q7Z460 1538 aa25.37■■□□□ 1.65
ERCC1-205ENST00000587888 PBRM1Q86U86 1689 aa25.33■■□□□ 1.65
ERCC1-205ENST00000587888 ABCA10Q8WWZ4 1543 aa25.32■■□□□ 1.64
ERCC1-205ENST00000587888 WRNQ14191 1432 aaPredicted RBP eCLIP25.26■■□□□ 1.63
ERCC1-205ENST00000587888 ABCA5Q8WWZ7 1642 aa25.25■■□□□ 1.63
ERCC1-205ENST00000587888 TOP2BQ02880 1626 aa25.15■■□□□ 1.62
ERCC1-205ENST00000587888 BIVM-ERCC5R4GMW8 1640 aa25.14■■□□□ 1.61
ERCC1-205ENST00000587888 GRIN2AQ12879 1464 aa25.13■■□□□ 1.61
ERCC1-205ENST00000587888 ADAMTS12P58397 1594 aa25.07■■□□□ 1.6
ERCC1-205ENST00000587888 FHAD1B1AJZ9 1412 aa25.06■■□□□ 1.6
ERCC1-205ENST00000587888 CEP170Q5SW79 1584 aa25.04■■□□□ 1.6
ERCC1-205ENST00000587888 ERCC6L2Q5T890 1561 aa25.04■■□□□ 1.6
ERCC1-205ENST00000587888 NUP160Q12769 1436 aa25.03■■□□□ 1.6
ERCC1-205ENST00000587888 ERICH3Q5RHP9 1530 aa24.99■■□□□ 1.59
ERCC1-205ENST00000587888 JPH4Q96JJ6 628 aa24.9■■□□□ 1.58
ERCC1-205ENST00000587888 SHROOM2Q13796 1616 aa24.89■■□□□ 1.57
ERCC1-205ENST00000587888 PRG4Q92954 1404 aaPredicted RBP24.87■■□□□ 1.57
ERCC1-205ENST00000587888 IGF1RP08069 1367 aa24.75■■□□□ 1.55
ERCC1-205ENST00000587888 KIF27Q86VH2 1401 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms