RNA–Protein interactions for RNA: ENST00000587740.5

NCLN-203, Transcript of nicalin, humanhuman

TSL 1 (best)

Gene NCLN, Length 1,210 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCLN-203ENST00000587740 NISCHQ9Y2I1 1504 aa39.48■■■■□ 3.91
NCLN-203ENST00000587740 ABCC9O60706 1549 aa35.98■■■■□ 3.35
NCLN-203ENST00000587740 CCDC180Q9P1Z9 1646 aa35.53■■■■□ 3.28
NCLN-203ENST00000587740 DNAJC5BQ9UF47 199 aa34.22■■■■□ 3.07
NCLN-203ENST00000587740 RB1CC1Q8TDY2 1594 aa34.02■■■■□ 3.04
NCLN-203ENST00000587740 NACADO15069 1562 aa33.7■■■□□ 2.99
NCLN-203ENST00000587740 DCAF8L2P0C7V8 631 aa33.49■■■□□ 2.95
NCLN-203ENST00000587740 PABPN1Q86U42 306 aaKnown RBP eCLIP33.49■■■□□ 2.958e-6■□□□□ 8.9
NCLN-203ENST00000587740 UNC13AQ9UPW8 1703 aa33.31■■■□□ 2.92
NCLN-203ENST00000587740 BICRAQ9NZM4 1560 aa33.14■■■□□ 2.9
NCLN-203ENST00000587740 MYO15BQ96JP2 1530 aa33.12■■■□□ 2.89
NCLN-203ENST00000587740 ZCCHC6Q5VYS8 1495 aaKnown RBP32.63■■■□□ 2.81
NCLN-203ENST00000587740 DCAF1Q9Y4B6 1507 aa32.56■■■□□ 2.8
NCLN-203ENST00000587740 SHROOM4Q9ULL8 1493 aa32.53■■■□□ 2.8
NCLN-203ENST00000587740 CC2D2AQ9P2K1 1620 aa32.48■■■□□ 2.79
NCLN-203ENST00000587740 CECR2Q9BXF3 1484 aa32.44■■■□□ 2.78
NCLN-203ENST00000587740 SCRIBQ14160 1630 aa32.4■■■□□ 2.78
NCLN-203ENST00000587740 EIF4G1Q04637 1599 aaKnown RBP32.31■■■□□ 2.76
NCLN-203ENST00000587740 DNAJC5Q9H3Z4 198 aa31.63■■■□□ 2.65
NCLN-203ENST00000587740 NCAPD3P42695 1498 aa31.16■■■□□ 2.58
NCLN-203ENST00000587740 CUX2O14529 1486 aa31.13■■■□□ 2.57
NCLN-203ENST00000587740 ERCC6Q03468 1493 aa31.04■■■□□ 2.56
NCLN-203ENST00000587740 ATAD2BQ9ULI0 1458 aa31.02■■■□□ 2.56
NCLN-203ENST00000587740 SMARCA4P51532 1647 aa30.87■■■□□ 2.53
NCLN-203ENST00000587740 HMGXB3Q12766 1538 aa30.86■■■□□ 2.53
NCLN-203ENST00000587740 SMARCA2P51531 1590 aa30.85■■■□□ 2.53
NCLN-203ENST00000587740 NESP48681 1621 aa30.84■■■□□ 2.53
NCLN-203ENST00000587740 BAZ1BQ9UIG0 1483 aaKnown RBP30.66■■■□□ 2.5
NCLN-203ENST00000587740 BAZ1AQ9NRL2 1556 aaPredicted RBP30.62■■■□□ 2.49
NCLN-203ENST00000587740 PEG3Q9GZU2 1588 aa30.57■■■□□ 2.48
NCLN-203ENST00000587740 THOC2Q8NI27 1593 aaKnown RBP30.56■■■□□ 2.48
NCLN-203ENST00000587740 LAMC3Q9Y6N6 1575 aa30.47■■■□□ 2.47
NCLN-203ENST00000587740 MROH2BQ7Z745 1585 aa30.45■■■□□ 2.46
NCLN-203ENST00000587740 KIF21AQ7Z4S6 1674 aa30.38■■■□□ 2.45
NCLN-203ENST00000587740 PDS5BQ9NTI5 1447 aa30.31■■■□□ 2.44
NCLN-203ENST00000587740 CADPSQ9ULU8 1353 aa30.19■■■□□ 2.42
NCLN-203ENST00000587740 MRC2Q9UBG0 1479 aa30.09■■■□□ 2.41
NCLN-203ENST00000587740 TRIM41Q8WV44 630 aa30.05■■■□□ 2.4
NCLN-203ENST00000587740 WIZO95785 1651 aa30.04■■■□□ 2.4
NCLN-203ENST00000587740 WDR62O43379 1518 aa30.04■■■□□ 2.4
NCLN-203ENST00000587740 CEP164Q9UPV0 1460 aa29.88■■■□□ 2.37
NCLN-203ENST00000587740 FANCD2Q9BXW9 1451 aa29.84■■■□□ 2.37
NCLN-203ENST00000587740 CFTRP13569 1480 aa29.77■■■□□ 2.36
NCLN-203ENST00000587740 OSCARQ8IYS5 282 aa29.68■■■□□ 2.34
NCLN-203ENST00000587740 RSF1Q96T23 1441 aaPredicted RBP29.68■■■□□ 2.34
NCLN-203ENST00000587740 URB2Q14146 1524 aaKnown RBP29.66■■■□□ 2.34
NCLN-203ENST00000587740 TOP2AP11388 1531 aaKnown RBP29.6■■■□□ 2.33
NCLN-203ENST00000587740 PRDM2Q13029 1718 aa29.37■■■□□ 2.29
NCLN-203ENST00000587740 ZNF608Q9ULD9 1512 aaPredicted RBP29.36■■■□□ 2.29
NCLN-203ENST00000587740 RIMBP3CA6NJZ7 1639 aa29.34■■■□□ 2.29
NCLN-203ENST00000587740 RIMBP3BA6NNM3 1639 aa29.34■■■□□ 2.29
NCLN-203ENST00000587740 RIMBP3Q9UFD9 1639 aa29.34■■■□□ 2.29
NCLN-203ENST00000587740 CCDC88BA6NC98 1476 aa29.31■■■□□ 2.28
NCLN-203ENST00000587740 IFT140Q96RY7 1462 aa29.31■■■□□ 2.28
NCLN-203ENST00000587740 TOPBP1Q92547 1522 aa29.25■■■□□ 2.27
NCLN-203ENST00000587740 ARHGEF11O15085 1522 aa29.2■■■□□ 2.27
NCLN-203ENST00000587740 EIF4G3O43432 1585 aaKnown RBP29.12■■■□□ 2.25
NCLN-203ENST00000587740 ABCC8Q09428 1581 aa29.09■■■□□ 2.25
NCLN-203ENST00000587740 DNMBPQ6XZF7 1577 aa29.07■■■□□ 2.24
NCLN-203ENST00000587740 AQRO60306 1485 aaKnown RBP eCLIP29.04■■■□□ 2.243e-7■■■■□ 21.8
NCLN-203ENST00000587740 CYB5RLQ6IPT4 315 aa29.03■■■□□ 2.24
NCLN-203ENST00000587740 TARBP1Q13395 1621 aaKnown RBP29.02■■■□□ 2.24
NCLN-203ENST00000587740 CHD1O14646 1710 aa28.99■■■□□ 2.23
NCLN-203ENST00000587740 POLA1P09884 1462 aaPredicted RBP28.92■■■□□ 2.22
NCLN-203ENST00000587740 ARAP1Q96P48 1450 aa28.91■■■□□ 2.22
NCLN-203ENST00000587740 FBLN2P98095 1184 aa28.89■■■□□ 2.22
NCLN-203ENST00000587740 RAD54L2Q9Y4B4 1467 aa28.85■■■□□ 2.21
NCLN-203ENST00000587740 TDRD9Q8NDG6 1382 aaKnown RBP28.8■■■□□ 2.2
NCLN-203ENST00000587740 TRHP20396 242 aaPredicted RBP28.8■■■□□ 2.2
NCLN-203ENST00000587740 SOGA1O94964 1423 aa28.78■■■□□ 2.2
NCLN-203ENST00000587740 SNAPC4Q5SXM2 1469 aa28.71■■■□□ 2.19
NCLN-203ENST00000587740 FGD5Q6ZNL6 1462 aa28.68■■■□□ 2.18
NCLN-203ENST00000587740 CLASP1Q7Z460 1538 aa28.66■■■□□ 2.18
NCLN-203ENST00000587740 CUX1P39880 1505 aa28.62■■■□□ 2.17
NCLN-203ENST00000587740 WDR97A6NE52 1622 aa28.61■■■□□ 2.17
NCLN-203ENST00000587740 CHMP7Q8WUX9 453 aaPredicted RBP28.61■■■□□ 2.17
NCLN-203ENST00000587740 MAGI1Q96QZ7 1491 aaPredicted RBP28.58■■■□□ 2.17
NCLN-203ENST00000587740 SYNJ1O43426 1573 aa28.56■■■□□ 2.16
NCLN-203ENST00000587740 GRIN2BQ13224 1484 aa28.55■■■□□ 2.16
NCLN-203ENST00000587740 SYNJ2O15056 1496 aa28.51■■■□□ 2.15
NCLN-203ENST00000587740 GAPVD1Q14C86 1478 aa28.41■■■□□ 2.14
NCLN-203ENST00000587740 PBRM1Q86U86 1689 aa28.4■■■□□ 2.14
NCLN-203ENST00000587740 ABCA10Q8WWZ4 1543 aa28.33■■■□□ 2.13
NCLN-203ENST00000587740 ABCA5Q8WWZ7 1642 aa28.31■■■□□ 2.12
NCLN-203ENST00000587740 ERCC6L2Q5T890 1561 aa28.24■■■□□ 2.11
NCLN-203ENST00000587740 AEBP2Q6ZN18 517 aaPredicted RBP28.2■■■□□ 2.1
NCLN-203ENST00000587740 GRIN2AQ12879 1464 aa28.2■■■□□ 2.1
NCLN-203ENST00000587740 NUP160Q12769 1436 aa28.14■■■□□ 2.1
NCLN-203ENST00000587740 CEP170Q5SW79 1584 aa28.13■■■□□ 2.09
NCLN-203ENST00000587740 ADAMTS12P58397 1594 aa28.12■■■□□ 2.09
NCLN-203ENST00000587740 WRNQ14191 1432 aaPredicted RBP eCLIP28.11■■■□□ 2.09
NCLN-203ENST00000587740 SUPT5HO00267 1087 aaKnown RBP28.06■■■□□ 2.08
NCLN-203ENST00000587740 SHROOM2Q13796 1616 aa28.03■■■□□ 2.08
NCLN-203ENST00000587740 FHAD1B1AJZ9 1412 aa28.03■■■□□ 2.08
NCLN-203ENST00000587740 TOP2BQ02880 1626 aa28.01■■■□□ 2.07
NCLN-203ENST00000587740 BIVM-ERCC5R4GMW8 1640 aa28.01■■■□□ 2.07
NCLN-203ENST00000587740 ERICH3Q5RHP9 1530 aa27.94■■■□□ 2.06
NCLN-203ENST00000587740 KIF13AQ9H1H9 1805 aa27.89■■■□□ 2.06
NCLN-203ENST00000587740 PRG4Q92954 1404 aaPredicted RBP27.89■■■□□ 2.06
NCLN-203ENST00000587740 JPH4Q96JJ6 628 aa27.86■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms