RNA–Protein interactions for RNA: ENST00000587600.1

LDLRAD4-210, Transcript of low density lipoprotein receptor class A domain containing 4, humanhuman

TSL 3

Gene LDLRAD4, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD4-210ENST00000587600 NISCHQ9Y2I1 1504 aa31.33■■■□□ 2.61
LDLRAD4-210ENST00000587600 CCDC180Q9P1Z9 1646 aa27.65■■■□□ 2.02
LDLRAD4-210ENST00000587600 ABCC9O60706 1549 aa26.41■■□□□ 1.82
LDLRAD4-210ENST00000587600 ZCCHC6Q5VYS8 1495 aaKnown RBP26.23■■□□□ 1.79
LDLRAD4-210ENST00000587600 DCAF1Q9Y4B6 1507 aa26.04■■□□□ 1.76
LDLRAD4-210ENST00000587600 MYO15BQ96JP2 1530 aa25.98■■□□□ 1.75
LDLRAD4-210ENST00000587600 NACADO15069 1562 aa25.89■■□□□ 1.73
LDLRAD4-210ENST00000587600 DCAF8L2P0C7V8 631 aa25.85■■□□□ 1.73
LDLRAD4-210ENST00000587600 RB1CC1Q8TDY2 1594 aa25.76■■□□□ 1.71
LDLRAD4-210ENST00000587600 SCRIBQ14160 1630 aa25.15■■□□□ 1.62
LDLRAD4-210ENST00000587600 UNC13AQ9UPW8 1703 aa25.02■■□□□ 1.6
LDLRAD4-210ENST00000587600 SHROOM4Q9ULL8 1493 aa24.92■■□□□ 1.58
LDLRAD4-210ENST00000587600 BICRAQ9NZM4 1560 aa24.88■■□□□ 1.57
LDLRAD4-210ENST00000587600 PABPN1Q86U42 306 aaKnown RBP eCLIP24.75■■□□□ 1.55
LDLRAD4-210ENST00000587600 BAZ1AQ9NRL2 1556 aaPredicted RBP24.28■■□□□ 1.48
LDLRAD4-210ENST00000587600 CECR2Q9BXF3 1484 aa24.26■■□□□ 1.47
LDLRAD4-210ENST00000587600 EIF4G1Q04637 1599 aaKnown RBP24.21■■□□□ 1.47
LDLRAD4-210ENST00000587600 SMARCA4P51532 1647 aa24.17■■□□□ 1.46
LDLRAD4-210ENST00000587600 MROH2BQ7Z745 1585 aa24.09■■□□□ 1.45
LDLRAD4-210ENST00000587600 RSF1Q96T23 1441 aaPredicted RBP24.06■■□□□ 1.44
LDLRAD4-210ENST00000587600 PEG3Q9GZU2 1588 aa24■■□□□ 1.43
LDLRAD4-210ENST00000587600 SMARCA2P51531 1590 aa23.97■■□□□ 1.43
LDLRAD4-210ENST00000587600 CC2D2AQ9P2K1 1620 aa23.95■■□□□ 1.42
LDLRAD4-210ENST00000587600 DNAJC5BQ9UF47 199 aa23.93■■□□□ 1.42
LDLRAD4-210ENST00000587600 ATAD2BQ9ULI0 1458 aa23.92■■□□□ 1.42
LDLRAD4-210ENST00000587600 NCAPD3P42695 1498 aa23.88■■□□□ 1.41
LDLRAD4-210ENST00000587600 WIZO95785 1651 aa23.83■■□□□ 1.4
LDLRAD4-210ENST00000587600 HMGXB3Q12766 1538 aa23.81■■□□□ 1.4
LDLRAD4-210ENST00000587600 BAZ1BQ9UIG0 1483 aaKnown RBP23.76■■□□□ 1.39
LDLRAD4-210ENST00000587600 SUPT5HO00267 1087 aaKnown RBP23.76■■□□□ 1.39
LDLRAD4-210ENST00000587600 TOP2AP11388 1531 aaKnown RBP23.7■■□□□ 1.38
LDLRAD4-210ENST00000587600 CCDC88BA6NC98 1476 aa23.38■■□□□ 1.33
LDLRAD4-210ENST00000587600 CADPSQ9ULU8 1353 aa23.19■■□□□ 1.3
LDLRAD4-210ENST00000587600 CFTRP13569 1480 aa23.17■■□□□ 1.3
LDLRAD4-210ENST00000587600 LAMC3Q9Y6N6 1575 aa23.15■■□□□ 1.3
LDLRAD4-210ENST00000587600 PDS5BQ9NTI5 1447 aa22.99■■□□□ 1.27
LDLRAD4-210ENST00000587600 NESP48681 1621 aa22.99■■□□□ 1.27
LDLRAD4-210ENST00000587600 PRDM2Q13029 1718 aa22.97■■□□□ 1.27
LDLRAD4-210ENST00000587600 FANCD2Q9BXW9 1451 aa22.89■■□□□ 1.25
LDLRAD4-210ENST00000587600 CEP164Q9UPV0 1460 aa22.83■■□□□ 1.25
LDLRAD4-210ENST00000587600 ERCC6Q03468 1493 aa22.79■■□□□ 1.24
LDLRAD4-210ENST00000587600 KIF21AQ7Z4S6 1674 aa22.74■■□□□ 1.23
LDLRAD4-210ENST00000587600 ABCC8Q09428 1581 aa22.72■■□□□ 1.23
LDLRAD4-210ENST00000587600 MRC2Q9UBG0 1479 aa22.69■■□□□ 1.22
LDLRAD4-210ENST00000587600 WRNQ14191 1432 aaPredicted RBP eCLIP22.69■■□□□ 1.22
LDLRAD4-210ENST00000587600 DNMBPQ6XZF7 1577 aa22.62■■□□□ 1.21
LDLRAD4-210ENST00000587600 WDR62O43379 1518 aa22.6■■□□□ 1.21
LDLRAD4-210ENST00000587600 URB2Q14146 1524 aaKnown RBP22.59■■□□□ 1.21
LDLRAD4-210ENST00000587600 THOC2Q8NI27 1593 aaKnown RBP22.59■■□□□ 1.21
LDLRAD4-210ENST00000587600 CUX1P39880 1505 aa22.57■■□□□ 1.2
LDLRAD4-210ENST00000587600 TOPBP1Q92547 1522 aa22.57■■□□□ 1.2
LDLRAD4-210ENST00000587600 TOP2BQ02880 1626 aa22.57■■□□□ 1.2
LDLRAD4-210ENST00000587600 BIVM-ERCC5R4GMW8 1640 aa22.56■■□□□ 1.2
LDLRAD4-210ENST00000587600 CHIC1Q5VXU3 224 aa22.54■■□□□ 1.2
LDLRAD4-210ENST00000587600 SYNJ1O43426 1573 aa22.53■■□□□ 1.2
LDLRAD4-210ENST00000587600 TRIM41Q8WV44 630 aa22.51■■□□□ 1.19
LDLRAD4-210ENST00000587600 FGD5Q6ZNL6 1462 aa22.44■■□□□ 1.18
LDLRAD4-210ENST00000587600 POLA1P09884 1462 aaPredicted RBP22.42■■□□□ 1.18
LDLRAD4-210ENST00000587600 CUX2O14529 1486 aa22.41■■□□□ 1.18
LDLRAD4-210ENST00000587600 IFT140Q96RY7 1462 aa22.35■■□□□ 1.17
LDLRAD4-210ENST00000587600 SOGA1O94964 1423 aa22.35■■□□□ 1.17
LDLRAD4-210ENST00000587600 ABCA10Q8WWZ4 1543 aa22.3■■□□□ 1.16
LDLRAD4-210ENST00000587600 TARBP1Q13395 1621 aaKnown RBP22.28■■□□□ 1.16
LDLRAD4-210ENST00000587600 WDR97A6NE52 1622 aa22.26■■□□□ 1.15
LDLRAD4-210ENST00000587600 RAD54L2Q9Y4B4 1467 aa22.26■■□□□ 1.15
LDLRAD4-210ENST00000587600 KIF27Q86VH2 1401 aa22.21■■□□□ 1.15
LDLRAD4-210ENST00000587600 EEA1Q15075 1411 aa22.2■■□□□ 1.14
LDLRAD4-210ENST00000587600 ABCA5Q8WWZ7 1642 aa22.13■■□□□ 1.13
LDLRAD4-210ENST00000587600 GAPVD1Q14C86 1478 aa22.11■■□□□ 1.13
LDLRAD4-210ENST00000587600 TDRD9Q8NDG6 1382 aaKnown RBP22.11■■□□□ 1.13
LDLRAD4-210ENST00000587600 ZNF608Q9ULD9 1512 aaPredicted RBP22.1■■□□□ 1.13
LDLRAD4-210ENST00000587600 EIF4G3O43432 1585 aaKnown RBP22.07■■□□□ 1.12
LDLRAD4-210ENST00000587600 AQRO60306 1485 aaKnown RBP eCLIP22.06■■□□□ 1.12
LDLRAD4-210ENST00000587600 ERICH3Q5RHP9 1530 aa22.06■■□□□ 1.12
LDLRAD4-210ENST00000587600 GRIN2BQ13224 1484 aa22.05■■□□□ 1.12
LDLRAD4-210ENST00000587600 RUSC2Q8N2Y8 1516 aa22.01■■□□□ 1.11
LDLRAD4-210ENST00000587600 IGF1RP08069 1367 aa22■■□□□ 1.11
LDLRAD4-210ENST00000587600 CSRNP3Q8WYN3 585 aa22■■□□□ 1.11
LDLRAD4-210ENST00000587600 MAGI1Q96QZ7 1491 aaPredicted RBP21.96■■□□□ 1.11
LDLRAD4-210ENST00000587600 PBRM1Q86U86 1689 aa21.96■■□□□ 1.11
LDLRAD4-210ENST00000587600 CUL7Q14999 1698 aa21.95■■□□□ 1.1
LDLRAD4-210ENST00000587600 FAM9AQ8IZU1 332 aaPredicted RBP21.91■■□□□ 1.1
LDLRAD4-210ENST00000587600 FHAD1B1AJZ9 1412 aa21.9■■□□□ 1.1
LDLRAD4-210ENST00000587600 SNAPC4Q5SXM2 1469 aa21.9■■□□□ 1.1
LDLRAD4-210ENST00000587600 PRXQ9BXM0 1461 aa21.9■■□□□ 1.1
LDLRAD4-210ENST00000587600 CARMIL1Q5VZK9 1371 aa21.89■■□□□ 1.1
LDLRAD4-210ENST00000587600 ADAMTS12P58397 1594 aa21.87■■□□□ 1.09
LDLRAD4-210ENST00000587600 SYNJ2O15056 1496 aa21.85■■□□□ 1.09
LDLRAD4-210ENST00000587600 KIF21BO75037 1637 aa21.84■■□□□ 1.09
LDLRAD4-210ENST00000587600 RAPGEF2Q9Y4G8 1499 aa21.83■■□□□ 1.09
LDLRAD4-210ENST00000587600 DNAJC5Q9H3Z4 198 aa21.82■■□□□ 1.08
LDLRAD4-210ENST00000587600 CHMP7Q8WUX9 453 aaPredicted RBP21.77■■□□□ 1.08
LDLRAD4-210ENST00000587600 GOLGA3Q08378 1498 aa21.77■■□□□ 1.07
LDLRAD4-210ENST00000587600 GRIN2AQ12879 1464 aa21.76■■□□□ 1.07
LDLRAD4-210ENST00000587600 FBLN2P98095 1184 aa21.68■■□□□ 1.06
LDLRAD4-210ENST00000587600 NUP160Q12769 1436 aa21.65■■□□□ 1.06
LDLRAD4-210ENST00000587600 CHD1O14646 1710 aa21.63■■□□□ 1.05
LDLRAD4-210ENST00000587600 UBTFP17480 764 aaKnown RBP21.61■■□□□ 1.05
LDLRAD4-210ENST00000587600 TNIKQ9UKE5 1360 aa21.61■■□□□ 1.05
LDLRAD4-210ENST00000587600 KIAA0586Q9BVV6 1533 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms