RNA–Protein interactions for RNA: ENST00000587338.1

SDF2-204, Transcript of stromal cell derived factor 2, humanhuman

TSL 3

Gene SDF2, Length 583 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-204ENST00000587338 NISCHQ9Y2I1 1504 aa21.85■■□□□ 1.09
SDF2-204ENST00000587338 ABCC9O60706 1549 aa20.13■□□□□ 0.81
SDF2-204ENST00000587338 CCDC180Q9P1Z9 1646 aa19.74■□□□□ 0.75
SDF2-204ENST00000587338 DNAJC5BQ9UF47 199 aa19.16■□□□□ 0.66
SDF2-204ENST00000587338 RB1CC1Q8TDY2 1594 aa18.98■□□□□ 0.63
SDF2-204ENST00000587338 NACADO15069 1562 aa18.75■□□□□ 0.59
SDF2-204ENST00000587338 PABPN1Q86U42 306 aaKnown RBP eCLIP18.7■□□□□ 0.58
SDF2-204ENST00000587338 DCAF8L2P0C7V8 631 aa18.65■□□□□ 0.58
SDF2-204ENST00000587338 UNC13AQ9UPW8 1703 aa18.52■□□□□ 0.56
SDF2-204ENST00000587338 BICRAQ9NZM4 1560 aa18.42■□□□□ 0.54
SDF2-204ENST00000587338 MYO15BQ96JP2 1530 aa18.36■□□□□ 0.53
SDF2-204ENST00000587338 CECR2Q9BXF3 1484 aa18.16■□□□□ 0.5
SDF2-204ENST00000587338 SHROOM4Q9ULL8 1493 aa18.14■□□□□ 0.5
SDF2-204ENST00000587338 CC2D2AQ9P2K1 1620 aa18.14■□□□□ 0.49
SDF2-204ENST00000587338 ZCCHC6Q5VYS8 1495 aaKnown RBP18.05■□□□□ 0.48
SDF2-204ENST00000587338 SCRIBQ14160 1630 aa18.03■□□□□ 0.48
SDF2-204ENST00000587338 EIF4G1Q04637 1599 aaKnown RBP18.02■□□□□ 0.48
SDF2-204ENST00000587338 DCAF1Q9Y4B6 1507 aa18■□□□□ 0.47
SDF2-204ENST00000587338 DNAJC5Q9H3Z4 198 aa17.83■□□□□ 0.44
SDF2-204ENST00000587338 CUX2O14529 1486 aa17.46■□□□□ 0.39
SDF2-204ENST00000587338 ERCC6Q03468 1493 aa17.42■□□□□ 0.38
SDF2-204ENST00000587338 NCAPD3P42695 1498 aa17.31■□□□□ 0.36
SDF2-204ENST00000587338 ATAD2BQ9ULI0 1458 aa17.23■□□□□ 0.35
SDF2-204ENST00000587338 NESP48681 1621 aa17.19■□□□□ 0.34
SDF2-204ENST00000587338 HMGXB3Q12766 1538 aa17.16■□□□□ 0.34
SDF2-204ENST00000587338 SMARCA2P51531 1590 aa17.16■□□□□ 0.34
SDF2-204ENST00000587338 SMARCA4P51532 1647 aa17.13■□□□□ 0.33
SDF2-204ENST00000587338 BAZ1BQ9UIG0 1483 aaKnown RBP17.07■□□□□ 0.32
SDF2-204ENST00000587338 THOC2Q8NI27 1593 aaKnown RBP17.06■□□□□ 0.32
SDF2-204ENST00000587338 BAZ1AQ9NRL2 1556 aaPredicted RBP17■□□□□ 0.31
SDF2-204ENST00000587338 LAMC3Q9Y6N6 1575 aa16.98■□□□□ 0.31
SDF2-204ENST00000587338 TRIM41Q8WV44 630 aa16.97■□□□□ 0.31
SDF2-204ENST00000587338 KIF21AQ7Z4S6 1674 aa16.94■□□□□ 0.3
SDF2-204ENST00000587338 PEG3Q9GZU2 1588 aa16.94■□□□□ 0.3
SDF2-204ENST00000587338 PDS5BQ9NTI5 1447 aa16.92■□□□□ 0.3
SDF2-204ENST00000587338 MROH2BQ7Z745 1585 aa16.85■□□□□ 0.29
SDF2-204ENST00000587338 MRC2Q9UBG0 1479 aa16.8■□□□□ 0.28
SDF2-204ENST00000587338 CADPSQ9ULU8 1353 aa16.78■□□□□ 0.28
SDF2-204ENST00000587338 WDR62O43379 1518 aa16.75■□□□□ 0.27
SDF2-204ENST00000587338 CEP164Q9UPV0 1460 aa16.67■□□□□ 0.26
SDF2-204ENST00000587338 WIZO95785 1651 aa16.62■□□□□ 0.25
SDF2-204ENST00000587338 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
SDF2-204ENST00000587338 OSCARQ8IYS5 282 aa16.61■□□□□ 0.25
SDF2-204ENST00000587338 CFTRP13569 1480 aa16.52■□□□□ 0.23
SDF2-204ENST00000587338 URB2Q14146 1524 aaKnown RBP16.5■□□□□ 0.23
SDF2-204ENST00000587338 AEBP2Q6ZN18 517 aaPredicted RBP16.45■□□□□ 0.22
SDF2-204ENST00000587338 RIMBP3CA6NJZ7 1639 aa16.45■□□□□ 0.22
SDF2-204ENST00000587338 RIMBP3BA6NNM3 1639 aa16.45■□□□□ 0.22
SDF2-204ENST00000587338 RIMBP3Q9UFD9 1639 aa16.45■□□□□ 0.22
SDF2-204ENST00000587338 TOP2AP11388 1531 aaKnown RBP16.4■□□□□ 0.22
SDF2-204ENST00000587338 RSF1Q96T23 1441 aaPredicted RBP16.37■□□□□ 0.21
SDF2-204ENST00000587338 ARHGEF11O15085 1522 aa16.36■□□□□ 0.21
SDF2-204ENST00000587338 ZNF608Q9ULD9 1512 aaPredicted RBP16.36■□□□□ 0.21
SDF2-204ENST00000587338 IFT140Q96RY7 1462 aa16.34■□□□□ 0.21
SDF2-204ENST00000587338 PRDM2Q13029 1718 aa16.3■□□□□ 0.2
SDF2-204ENST00000587338 CYB5RLQ6IPT4 315 aa16.27■□□□□ 0.2
SDF2-204ENST00000587338 TOPBP1Q92547 1522 aa16.25■□□□□ 0.19
SDF2-204ENST00000587338 EIF4G3O43432 1585 aaKnown RBP16.25■□□□□ 0.19
SDF2-204ENST00000587338 TRHP20396 242 aaPredicted RBP16.23■□□□□ 0.19
SDF2-204ENST00000587338 CCDC88BA6NC98 1476 aa16.21■□□□□ 0.19
SDF2-204ENST00000587338 ARAP1Q96P48 1450 aa16.18■□□□□ 0.18
SDF2-204ENST00000587338 CHD1O14646 1710 aa16.18■□□□□ 0.18
SDF2-204ENST00000587338 ABCC8Q09428 1581 aa16.17■□□□□ 0.18
SDF2-204ENST00000587338 AQRO60306 1485 aaKnown RBP eCLIP16.16■□□□□ 0.182e-8■■■□□ 18.6
SDF2-204ENST00000587338 FBLN2P98095 1184 aa16.16■□□□□ 0.18
SDF2-204ENST00000587338 DNMBPQ6XZF7 1577 aa16.16■□□□□ 0.18
SDF2-204ENST00000587338 TARBP1Q13395 1621 aaKnown RBP16.12■□□□□ 0.17
SDF2-204ENST00000587338 POLA1P09884 1462 aaPredicted RBP16.07■□□□□ 0.16
SDF2-204ENST00000587338 RAD54L2Q9Y4B4 1467 aa16.03■□□□□ 0.16
SDF2-204ENST00000587338 TDRD9Q8NDG6 1382 aaKnown RBP16.02■□□□□ 0.16
SDF2-204ENST00000587338 SNAPC4Q5SXM2 1469 aa16■□□□□ 0.15
SDF2-204ENST00000587338 SOGA1O94964 1423 aa15.99■□□□□ 0.15
SDF2-204ENST00000587338 CLASP1Q7Z460 1538 aa15.99■□□□□ 0.15
SDF2-204ENST00000587338 CHMP7Q8WUX9 453 aaPredicted RBP15.96■□□□□ 0.15
SDF2-204ENST00000587338 SYNJ1O43426 1573 aa15.96■□□□□ 0.14
SDF2-204ENST00000587338 FGD5Q6ZNL6 1462 aa15.93■□□□□ 0.14
SDF2-204ENST00000587338 MAGI1Q96QZ7 1491 aaPredicted RBP15.92■□□□□ 0.14
SDF2-204ENST00000587338 WDR97A6NE52 1622 aa15.92■□□□□ 0.14
SDF2-204ENST00000587338 GRIN2BQ13224 1484 aa15.9■□□□□ 0.14
SDF2-204ENST00000587338 SYNJ2O15056 1496 aa15.88■□□□□ 0.13
SDF2-204ENST00000587338 GAPVD1Q14C86 1478 aa15.85■□□□□ 0.13
SDF2-204ENST00000587338 CUX1P39880 1505 aa15.85■□□□□ 0.13
SDF2-204ENST00000587338 PBRM1Q86U86 1689 aa15.79■□□□□ 0.12
SDF2-204ENST00000587338 ERCC6L2Q5T890 1561 aa15.73■□□□□ 0.11
SDF2-204ENST00000587338 ABCA5Q8WWZ7 1642 aa15.72■□□□□ 0.11
SDF2-204ENST00000587338 ABCA10Q8WWZ4 1543 aa15.71■□□□□ 0.11
SDF2-204ENST00000587338 GRIN2AQ12879 1464 aa15.69■□□□□ 0.1
SDF2-204ENST00000587338 CEP170Q5SW79 1584 aa15.66■□□□□ 0.1
SDF2-204ENST00000587338 ADAMTS12P58397 1594 aa15.65■□□□□ 0.1
SDF2-204ENST00000587338 NUP160Q12769 1436 aa15.64■□□□□ 0.09
SDF2-204ENST00000587338 SHROOM2Q13796 1616 aa15.6■□□□□ 0.09
SDF2-204ENST00000587338 WRNQ14191 1432 aaPredicted RBP eCLIP15.6■□□□□ 0.09
SDF2-204ENST00000587338 FHAD1B1AJZ9 1412 aa15.58■□□□□ 0.08
SDF2-204ENST00000587338 KIF13AQ9H1H9 1805 aa15.57■□□□□ 0.08
SDF2-204ENST00000587338 PRG4Q92954 1404 aaPredicted RBP15.54■□□□□ 0.08
SDF2-204ENST00000587338 ERICH3Q5RHP9 1530 aa15.5■□□□□ 0.07
SDF2-204ENST00000587338 FAM69CQ0P6D2 419 aa15.5■□□□□ 0.07
SDF2-204ENST00000587338 TOP2BQ02880 1626 aa15.5■□□□□ 0.07
SDF2-204ENST00000587338 BIVM-ERCC5R4GMW8 1640 aa15.49■□□□□ 0.07
SDF2-204ENST00000587338 ABCC10Q5T3U5 1492 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms